Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “Fitting”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,261 records · Page 70Linked to original sources
PubMed2004

Genetic basis and fitness consequences of winglessness in the two-spot ladybird beetle, Adalia bipunctata.

The genetic basis and fitness consequences of winglessness were investigated in the two-spot ladybird beetle, Adalia bipunctata. By breeding lines from a wingless individual found at The Uithof, Utrecht in The Netherlands, the wingless condition was confirmed to be under the control of a major allele, recessive to the wild type. Wingless individuals, on average, had a longer developmental period, a lower egg production and a shorter lifespan than the wild type with wings, suggesting that the expression of the wingless allele has functionally interrelated gene actions involving a wide range of fitness components. While the wingless allele influences various traits, significant among-family variation in the degree of winglessness suggests that its phenotypic expression is also dependent on the genetic background and modifier loci. Furthermore, there was a consistent pattern of correlation between the degree of winglessness and life history traits; the most extreme wingless individuals showed the lowest fitness while those with more fully developed wings tended to have the highest fitness. This correlation suggests that the modifier genes influence both wing formation and fitness components. The significance of such epistatic effects to the evolution of flightlessness in insects is discussed.

Animals↗
PubMed2005

Hybrid zones between invasive Rorippa austriaca and native R. sylvestris (Brassicaceae) in Germany: ploidy levels and patterns of fitness in the field.

Hybrid zones may serve as natural laboratories for evolutionary studies. One common viewpoint is that hybrids may always be less fit than their parents due to genetic discontinuities. An alternative idea is that genotype-environment interactions influence the outcome of natural hybridization. Our comparative study of two different natural hybrid zones between the invasive diploid Rorippa austriaca and the native polyploid R. sylvestris in Germany identified the ploidy level as a major determinant of hybrid fitness. Different ploidy levels and patterns of fitness were detected in different hybrid zones. In one hybrid zone (Mülheim, Ruhr valley) hybrids were pentaploid and showed a relatively high seed set, whereas in the second hybrid zone (Randersacker, Main valley) hybrids were triploid and displayed extremely low fitness values. Analyses of fitness values in different natural hybrid zones between the same two species may lead to very different conclusions about the evolutionary significance of natural hybridization.

DNA, Chloroplast↗
PubMed2002

Determination of chromatographic peak parameters by non-linear curve fitting using statistical moments.

There are many methods (manual, computer), which make possible the detailed analysis of chromatographic peak shape. Curve fitting seems to be one of the successful applications of the evaluation of chromatographic signals. In this case, a mathematical function is fitted to the digitized measuring points. Chromatographic elution curves are generally asymmetric, so it is necessary to find the best mathematical function, which corresponds perfectly to the signal form, and then to determine the parameters of the found equation. In this work a modified mathematical function is presented and used for curve fitting, in which the starting parameters are calculated from the statistical moments (retention time, variance, skewness, excess) of the peak shape. The fitting process gives a more accurate and rapid determination of peak shape characteristics, noise filtering and correction of baseline. The suggested modified Gaussian function, the simulated chromatographic peak shapes, the application of the function to the description of real signals and the parameters obtained by the fitting process will be demonstrated.

Journal Article↗
PubMed2003

Complete curve fitting of extraction profiles for estimating uncertainties in recovery estimates.

This paper reports the use of improved numerical approaches to modelling extraction profiles, and shows that the approach substantially reduces statistical prediction uncertainties compared to those obtained on the basis of a three-point extrapolation from the later part of the extraction curve. Numerical fitting of manually obtained polycyclic aromatic hydrocarbon extraction data to a spherical particle diffusion model showed uncertainties typically reduced by a factor of three (with extremes at 1.02 and 770). Application to pressurised fluid extraction study of pelletised poly(vinylchloride) containing 30 mass% di(2-ethylhexyl)phthalate also showed good improvements. However, this high precision data showed small but significant lack of fit resulting in residual correlation and visibly biased prediction (more so than simple extrapolation). Re-fitting and uncertainty estimation using a first-order autoregression approximation to the covariance matrix produced more realistic uncertainty estimates and closer parameter estimates and is accordingly recommended for treating residual correlation from other causes, but did not entirely alleviate the problem. Different shape models (spherical, plane sheet and cylindrical) were applied without accounting fully for fitting error, and particle size effects were eliminated by modelling a simple size distribution. However, an approximate model based on linearly concentration-dependent diffusion coefficient showed excellent fit, confirming concentration-dependence as the most likely cause. This semiempirical model led to an uncertainty in total extractable material, at 0.2% of the total extractable value (with allowance for correlation). This is potentially good enough for recovery estimation and correction in certification of reference materials for validation purposes.

Journal Article↗
PubMed2006

Effects of intra-gene fitness interactions on the benefit of sexual recombination.

Whereas spontaneous point mutation operates on nucleotides individually, sexual recombination manipulates the set of nucleotides within an allele as an essentially particulate unit. In principle, these two different scales of variation enable selection to follow fitness gradients in two different spaces: in nucleotide sequence space and allele sequence space respectively. Epistasis for fitness at these two scales, between nucleotides and between genes, may be qualitatively different and may significantly influence the advantage of mutation-based and recombination-based evolutionary trajectories respectively. We examine scenarios where the genetic sequence within a gene strongly influences the fitness effect of a mutation in that gene, whereas epistatic interactions between sites in different genes are weak or absent. We find that, in cases where beneficial alleles of a gene differ from one another at several nucleotide sites, sexual populations can exhibit enormous benefit compared with asexual populations: not only discovering fit genotypes faster than asexual populations, but also discovering high-fitness genotypes that are effectively not evolvable in asexual populations.

Animals↗
PubMed1998

Associative overdominance, heterozygosity and fitness.

Our aim in this study was to examine the power of associative overdominance in creating a correlation between individual heterozygosity and fitness and in maintaining genetic polymorphism at neutral loci. This was undertaken by simulating a diploid model with five chromosomes, each with 1000 loci that could have deleterious mutations linked to neutral markers located on the same chromosomes. The simulations were carried out with various combinations of the following parameters: population size (N), number of crossovers (c), selection coefficient (s) and dominance (h). All combinations of parameter values resulted in a positive regression of the fitness on the individual marker heterozygosity, although the fitness differences were not very large when c = 2. The association between individual heterozygosity and fitness was clearest for recessive mutations (small h) with intermediate selection coefficients in small populations. The level of marker heterozygosity in the population was higher than the neutral expectation for many parameter values, even though regression of fitness on heterozygosity was not always steep at the individual level. These results agreed with the conclusion that associative overdominance could help to maintain polymorphisms in small populations. Strong selection occasionally yielded gene diversities lower than the neutral expectation, reflecting the prediction that strong selection reduces the effective population size.

Computer Simulation↗
PubMed2003

Relationship between fluctuating asymmetry and fitness within and between stressed and unstressed populations of the wolf spider Pirata piraticus.

Although developmental instability, measured as fluctuating asymmetry (FA), is expected to be positively related to stress and negatively to fitness, empirical evidence is often lacking or contradictory when patterns are compared at the population level. We demonstrate that two important properties of stressed populations may mask such relationships: (i) a stronger relationship between FA and fitness, resulting in stronger selection against low quality (i.e. developmental unstable) individuals and (ii) the evolution of adaptive responses to environmental stress. In an earlier study, we found female wolf spiders Pirata piraticus from metal exposed populations to be characterized by both reduced clutch masses and increased egg sizes, the latter indicating an adaptive response to stress. By studying the relationship between these two fitness related traits and levels of FA at individual level, we here show a significant negative correlation between FA and clutch mass in metal stressed populations but not in unstressed reference populations. As a result, levels of population FA may be biased downward under stressful conditions because of the selective removal of developmentally unstable (low quality) individuals. We further show that females that produced larger eggs in stressed populations exhibited lower individual FA levels. Such interaction between individual FA and fitness with stress may confound the effect of metal stress on FA, resulting in an absence of relationships between FA, fitness and stress at the population level.

Adaptation, Physiological↗
PubMed2003

Truth and validity in grounded theory -- a reconsidered realist interpretation of the criteria: fit, work, relevance and modifiability.

Grounded theory is a frequently used approach in nursing research. Over the years the methodology has developed in different directions with ambiguous answers to questions of truth and validity. This ambiguity influences the interpretation of the criteria for quality judgement of grounded theories: fit, work, relevance and modifiability. In particular, the criterion fit seems to be caught in a vacuum between different epistemological and ontological positions. Fit can be interpreted either from a realist or from a nonrealist position but both present problems. A realist position is problematic if it insists on an immutable empirical world and ignores the social and psychological aspects of human life. A nonrealist position can either be argued to rely on hidden realist assumptions and therefore to be inconsistent, or it can be relativistic, opening up the possibility of 'anything goes' attitudes in research and solipsistic confirmations of the world view of researchers with little or misleading practical impact. A reconsideration of the realist position is suggested, in which validity is regulated by the social constructed reality 'as it really is'. From this position fit is a matter of correspondence to facts in social reality. The criteria work, relevance and modifiability are argued to support the fitness of a theory, and to be useful in the broader evaluation of the quality of grounded theories.

Humans↗
PubMed1998

Experimental assessment of endoscopic mucosectomy with a cap-fitted panendoscope.

BACKGROUND AND STUDY AIMS: The use of a cap-fitted panendoscope is one method of carrying out endoscopic mucosectomy in the esophagus, stomach, and large intestine. The purpose of this study was to determine the optimal volume of physiological saline for submucosal injection, the rate of mucosal extension after saline injection, the initial size of the resected mucosal specimen, and the most appropriate heights for the fitted caps used in the colon and in the rectum, respectively. METHODS: Endoscopic mucosectomies using cap-fitted panendoscopes were carried out on resected surgical specimens from ten patients with colorectal cancer. RESULTS: It was necessary to inject 12 ml of saline under the mucosa to prevent perforation. Submucosal saline injection extended the mucosa by 1.4 +/- 0.2 times. A cap with a height of 7 mm is suitable for performing mucosectomy in the colon safely, while both 7 mm and 10 mm caps can be used in the rectum. The initial size of the resected mucosal specimens obtained with both caps was 12-20 mm (mean 14 mm) in diameter, with no significant differences. As the sizes of resected mucosal specimens reported in the past have been obtained after submucosal saline injection, it appears that larger specimens can be resected with the cap-fitted panendoscope than with conventional methods. CONCLUSIONS: The conditions under which endoscopic mucosectomy using the cap-fitted panendoscope can be performed safely in the colon and the rectum were suggested by this experimental study using resected specimens. A saline injection of 12 ml under the mucosa is necessary to prevent perforation. A cap with a height of 7 mm is the most suitable size for the colon, while both 7 mm and 10 mm caps can be used in the rectum.

Biopsy, Needle↗
PubMed2004

Application of direct potential fitting to line position data for the X (1)Sigma(+) and A (1)Sigma(+) states of LiH.

A collection of 9089 spectroscopic LiH line positions, of widely varying precision, which sample 84.9% and 98.6% of the A and X state well depths, respectively, have been employed in a direct least-squares fit of the effective potential energy and Born-Oppenheimer breakdown functions for the two states. For the four isotopomers (6)LiH, (7)LiH, (6)LiD, and (7)LiD, the data comprise both pure rotational and vibration-rotational transitions within the ground state, as well as rotationally resolved transitions in the A-X system. Despite the unusual shape and associated anomalous properties of the A state potential, no special features or considerations were required in the direct potential fitting approach. The reduced standard deviation of the fit was close to unity, indicating that the quantum mechanical eigenvalues calculated from the fully analytical functions of the Hamiltonians of the two states, which are characterized by a total of only 53 fitted parameters, represent the line positions, on average, to within the estimated uncertainties. A quantum mechanical calculation of the molecular constants G(nu), B(nu), D(nu), H(nu), L(nu), M(nu), N(nu), and O(nu) from the fitted potential for the A state of (7)LiH confirms that the usual polynomial expansion in J(J+1) is an unsatisfactory representation for the rotational terms of the lowest vibrational levels.

Journal Article↗
PubMed2006

Linear scaling density fitting.

Two modifications of the resolution of the identity (RI)/density fitting (DF) approximations are presented. First, we apply linear scaling and J-engine techniques to speed up traditional DF. Second, we develop an algorithm that produces local, accurate fits with effort that scales linearly with system size. The fits produced are continuous, differentiable, well-defined, and do not require preset fitting domains. This metric-independent technique for producing a priori local fits is shown to be accurate and robust even for large systems. Timings are presented for linear scaling RI/DF calculations on large one-, two-, and three-dimensional carbon systems.

Algorithms↗
PubMed2003

Cyclic loading of implant-supported prostheses: changes in component fit over time.

STATEMENT OF PROBLEM: Dental literature suggests that an implant-supported prosthesis must exhibit a passive fit to prevent implant fracture, component breakage, and screw loosening. From a practical standpoint, passive fit is impossible to achieve; instead, minimal misfit may be the clinical goal. To date no specific range of misfit (below which problems are minimal and above which catastrophic failure occurs) has been established. PURPOSE: The purpose of this study was to determine whether the fit of an implant-supported prosthesis changes through cyclic loading and to quantify the amount of change between the gold cylinder and implant abutment over time. MATERIAL AND METHODS: Fifteen implant-supported frameworks were fabricated with conventional casting techniques and were cyclically loaded under 3 different loading conditions. Five frameworks were loaded on the anterior portion of the framework, 5 were loaded on the left unilateral posterior cantilever, and 5 were loaded bilaterally on the posterior cantilevers with a servohydraulic testing machine. A cyclical load of 200 N was applied to each framework for up to 200,000 cycles. Linear measurements were made in micrometers of the gap between the prosthetic cylinder and the implant-supported abutment at 4 predetermined reference points. These measurements were recorded before the application of the cyclical load, after 50,000 cycles, and after 200,000 cycles. A repeated measures of variance model was fit separately to the data for each load location (P<.05). RESULTS: There was a significant (P=.024) decrease in gap dimensions at individual reference points and a significant (P=.031) decrease in the average gap when the load was applied to the anterior portion of the framework. When the load was applied unilaterally or bilaterally on the posterior cantilever, significant gap closure was not observed (P=.33 and P=.35, respectively). CONCLUSION: Within the limitations of this study, the fit between the prosthetic superstructure and the implant-supported abutment changed when simulated functional loading of the anterior portion of the prosthesis was performed. Simulated functional loading applied unilaterally or bilaterally to the posterior cantilever portion of the prosthesis did not result in changes in the measured gap sizes.

Analysis of Variance↗
PubMed2002

Loss of circadian clock function decreases reproductive fitness in males of Drosophila melanogaster.

Circadian coordination of life functions is believed to contribute to an organism's fitness; however, such contributions have not been convincingly demonstrated in any animal. The most significant measure of fitness is the reproductive output of the individual and species. Here we examined the consequences of loss of clock function on reproductive fitness in Drosophila melanogaster with mutated period (per(0)), timeless (tim(0)), cycle (cyc(0)), and Clock (Clk(Jrk)) genes. Single mating among couples with clock-deficient phenotypes resulted in approximately 40% fewer progeny compared with wild-type flies, because of a decreased number of eggs laid and a greater rate of unfertilized eggs. Male contribution to this phenotype was demonstrated by a decrease in reproductive capacity among per(0) and tim(0) males mated with wild-type females. The important role of clock genes for reproductive fitness was confirmed by reversal of the low-fertility phenotype in flies with rescued per or tim function. Males lacking a functional clock showed a significant decline in the quantity of sperm released from the testes to seminal vesicles, and these tissues displayed rhythmic and autonomous expression of clock genes. By combining molecular and physiological approaches, we identified a circadian clock in the reproductive system and defined its role in the sperm release that promotes reproductive fitness in D. melanogaster.

Animals↗
PubMed2005

Comparative evolutionary genetics of spontaneous mutations affecting fitness in rhabditid nematodes.

Deleterious mutations are of fundamental importance to all aspects of organismal biology. Evolutionary geneticists have expended tremendous effort to estimate the genome-wide rate of mutation and the effects of new mutations on fitness, but the degree to which genomic mutational properties vary within and between taxa is largely unknown, particularly in multicellular organisms. Beginning with two highly inbred strains from each of three species in the nematode family Rhabditidae (Caenorhabditis briggsae, Caenorhabditis elegans, and Oscheius myriophila), we allowed mutations to accumulate in the relative absence of natural selection for 200 generations. We document significant variation in the rate of decay of fitness because of new mutations between strains and between species. Estimates of the per-generation mutational decay of fitness were very consistent within strains between assays 100 generations apart. Rate of mutational decay in fitness was positively associated with genomic mutation rate and negatively associated with average mutational effect. These results provide unambiguous experimental evidence for substantial variation in genome-wide properties of mutation both within and between species and reinforce conclusions from previous experiments that the cumulative effects on fitness of new mutations can differ markedly among related taxa.

Animals↗
PubMed2005

Enhanced in vivo fitness of fluoroquinolone-resistant Campylobacter jejuni in the absence of antibiotic selection pressure.

Campylobacter jejuni, a major foodborne human pathogen, has become increasingly resistant to fluoroquinolone (FQ) antimicrobials. By using clonally related isolates and genetically defined mutants, we determined the fitness of FQ-resistant Campylobacter in chicken (a natural host and a major reservoir for C. jejuni) in the absence of antibiotic selection pressure. When monoinoculated into the host, FQ-resistant and FQ-susceptible Campylobacter displayed similar levels of colonization and persistence in the absence of FQ antimicrobials. The prolonged colonization in chickens did not result in loss of the FQ resistance and the resistance-conferring point mutation (C257 --> T) in the gyrA gene. Strikingly, when coinoculated into chickens, the FQ-resistant Campylobacter isolates outcompeted the majority of the FQ-susceptible strains, indicating that the resistant Campylobacter was biologically fit in the chicken host. The fitness advantage was not due to compensatory mutations in the genes targeted by FQ and was linked directly to the single point mutation in gyrA, which confers on Campylobacter a high-level resistance to FQ antimicrobials. In certain genetic backgrounds, the same point mutation entailed a biological cost on Campylobacter, as evidenced by its inability to compete with the FQ-susceptible Campylobacter. These findings provide a previously undescribed demonstration of the profound effect of a resistance-conferring point mutation in gyrA on the fitness of a major foodborne pathogen in its natural host and suggest that the rapid emergence of FQ-resistant Campylobacter on a worldwide scale may be attributable partly to the enhanced fitness of the FQ-resistant isolates.

Animals↗
PubMed2002

Interaction of pollinators and herbivores on plant fitness suggests a pathway for correlated evolution of mutualism- and antagonism-related traits.

Different kinds of plant-animal interactions are ordinarily studied in isolation, yet considering the combined fitness effects of mutualistic and antagonistic interactions is essential to understanding plant character evolution. Functional, structural, or phylogenetic associations between attractive and defensive traits may be nonadaptive or result from correlational selection on sets of herbivory- and pollination-linked traits. Nonadditivity of fitness effects of mutualists and antagonists, a requisite for correlational selection, was experimentally tested in the field. We created experimental populations of the insect-pollinated perennial herb, Helleborus foetidus, at 16 different locations distributed among three regions in the Iberian Peninsula. Plants experienced one of four possible selective regimes generated by independently weakening the effects of pollinators and herbivores (flower and fruit predators) according to a two-way fully factorial design. Effects were assessed in terms of number of next-generation offspring recruited per mother plant under natural field conditions. Differences among H. foetidus plants in the strength of their interactions with pollinators and herbivores translated into differential fitness, as measured in terms of recruited offspring, and subsequent changes in plant population densities. A strong, geographically consistent nonadditivity in the fitness consequences of pollinators and herbivores was found also. Plants possessing the particular combination of "traits" simultaneously enhancing pollination and escape from herbivores enjoyed a disproportionate fitness advantage over plants possessing any of the other three possible "trait" combinations. Results suggest a simple, possibly widespread ecological pathway favoring the adaptive correlated evolution of mutualism- and antagonism-related plant traits in pollinator-dependent plants suffering intense flower and fruit herbivory.

Journal Article↗
PubMed1994

Temperature acclimation and competitive fitness: an experimental test of the beneficial acclimation assumption.

Phenotypic acclimation is generally assumed to confer an advantage in the environment that stimulates the response. To test this beneficial acclimation assumption explicitly, we investigated the consequences of temperature acclimation for the fitness of Escherichia coli at two temperatures, 32 degrees C and 41.5 degrees C. Both temperatures permit growth and long-term persistence of the genotypes in serial culture. We found that prior acclimation to 32 degrees C, relative to acclimation to 41.5 degrees C, enhanced fitness at 32 degrees C, consistent with the assumption. But prior acclimation to 41.5 degrees C actually reduced fitness at 41.5 degrees C, relative to acclimation to 32 degrees C. Hence, the assumption that acclimation always confers an advantage is demonstrated to be false. Acclimation to 41.5 degrees C did, however, improve survival at 50 degrees C, a lethal temperature. This protective response has been shown to be associated with the induction of stress proteins. The reduced competitive fitness caused by acclimation at 41.5 degrees C may reflect a physiological burden associated with expression of stress proteins when they are not needed to prevent lethal damage. Whatever the cause, acclimation to the higher temperature decreased competitive fitness at that temperature.

Acclimatization↗
PubMed1995

Organismal duplication, inclusive fitness theory, and altruism: understanding the evolution of endosperm and the angiosperm reproductive syndrome.

For almost a century, events relating to the evolutionary origin of endosperm, a unique embryo-nourishing tissue that is essential to the reproductive process in flowering plants, have remained a mystery. Integration of recent advances in phylogenetic reconstruction, comparative reproductive biology, and genetic theory can be used to elucidate the evolutionary events and forces associated with the establishment of endosperm. Endosperm is shown to be derived from one of two embryos formed during a rudimentary process of "double fertilization" that evolved in the ancestors of angiosperms. Acquisition of embryo-nourishing behavior (with accompanying loss of individual fitness) by this supernumerary fertilization product was dependent upon compensatory gains in the inclusive fitness of related embryos. The result of the loss of individual fitness by one of the two original products of double fertilization was the establishment of endosperm, a highly modified embryo/organism that reproduces cryptically through behavior that enhances the fitness of its associated embryo within a seed. Finally, although triploid endosperm remains a synapomorphy of angiosperms, inclusive fitness analysis demonstrates that the embryo-nourishing properties of endosperm initially evolved in a diploid condition.

Journal Article↗