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At least 127 records · Page 7Linked to original sources
PubMed2004

Surface/interface electronic structure in C(60) anchored aminothiolate self-assembled monolayer: an approach to molecular electronics.

Electronic structure in self-assembled monolayers (SAMs) of C(60) anchored 11-amino-1-undecane thiol (C(60)-11-AUT) on Au(111) was studied by means of ultraviolet photoelectron spectroscopy and hybrid density functional theory calculations. Valence band features of the molecular conformation revealed the interface electronic structure to be dominated by sigma(S-Au), localized at the thiolate anchor to Au. Formation of a localized covalent bond as a result of hybridization between N P(z) orbital of -NH(2) group of the thiolate SAM and the pi level of C(60) resulted in a symmetry change from I(h) in C(60) to C1 in C(60)-11-AUT SAM. Appearance of low, but finite amplitude surface electronic states of bonded C(60), much beyond the Fermi level, ruled out Au-C(60) end group contact. The band gap E(g) of the SAM, determined to be 2.7 eV, was drastically reduced from the insulating alkanethiol SAMs ( approximately 8.0 eV) and fell intermediate between the C(60) ground state (N electrons, 1.6 eV) and C(60) solid (N+/-1 electrons, 3.7 eV).

Journal Article↗
PubMed2006

Oxidative properties of FeO2+: electronic structure and solvation effects.

An electronic structure analysis is provided of the action of solvated FeO(2+), [FeO(H(2)O)(5)](2+), as a hydroxylation catalyst. It is emphasized that the oxo end of FeO(2+) does not form hydrogen bonds (as electron donor and H-bond acceptor) with H-bond donors nor with aliphatic C-H bonds, but it activates C-H bonds as an electron acceptor. It is extremely electrophilic, to the extent that it can activate even such poor electron donors as aliphatic C-H bonds, the C-H bond orbital acting as electron donor in a charge transfer type of interaction. Lower lying O-H bonding orbitals are less easily activated. The primary electron accepting orbital in a water environment is the 3sigma*alpha orbital, an antibonding combination of Fe-3d(z(2)) and O-2p(z), which is very low-lying relative to the pi*alpha compared with, for example, the sigma* orbital in O(2) relative to its pi*. This is ascribed to relatively small Fe-3d(z(2)) with O-2p(z) overlap, due to the nodal structure of the 3d(z(2)).The H-abstraction barrier is very low in the gas phase, but it is considerably enhanced in water solvent. This is shown to be due to strong screening effects of the dielectric medium, leading to relative destabilization of the levels of the charged [FeO(H(2)O)(5)](2+) species compared to those of the neutral substrate molecules, making it a less effective electron acceptor. The solvent directly affects the orbital interactions responsible for the catalytic reaction.

Journal Article↗
PubMed2002

Oxalate-bridged complexes of dimolybdenum and ditungsten supported by pivalate ligands: ((t)BuCO(2))(3)M(2)(mu-O(2)CCO(2))M(2)(O(2)C(t)Bu)(3). Correlation of the solid-state, molecular, and electronic structures with Raman, resonance Raman, and electronic spectral data.

The compounds ((t)BuCO(2))(3)M(2)(mu-O(2)CCO(2))M(2)(O(2)C(t)Bu)(3) (M(4)OXA), where M = Mo or W, are shown by analysis of powder X-ray diffraction data to have extended lattice structures wherein oxygen atoms from the oxalate and pivalate ligands of one M(4)OXA molecule are linked to metal atoms of neighboring molecules. Raman, resonance Raman, electronic absorption (2-325 K in 2-MeTHF), and emission spectra are reported, together with corresponding spectra of the mu-O(2)(13)C(13)CO(2) isotopomers. To aid in the assignment, the Raman spectra of K(2)C(2)O(4).H(2)O and K(2)(13)C(2)O(4).H(2)O have also been recorded. The visible region of the electronic spectra is dominated by intense, fully allowed MLCT transitions, M(2) delta to oxalate pi*, which show pronounced thermochromism and extensive vibronic progressions associated with the oxalate ligand at low temperatures. With excitation into these charge-transfer bands, strong resonance enhancement is seen for Raman bands assigned to the oxalate nu(1)(a(g)) and, to a lesser extent, nu(2)(a(g)) modes. Electronic structure calculations for the model compounds (HCO(2))(3)M(2)(mu-O(2)CCO(2))M(2)(O(2)CH)(3), employing density functional theory (gradient corrected and time-dependent) with the Gaussian 98 and ADF 2000 packages, predict the planar oxalate D(2h) configuration to be favored, which maximizes M(2) delta to oxalate pi* back-bonding, and indicate low barriers (<8 kcal mol(-1)) to rotation about the oxalate C-C bonds.

Journal Article↗
PubMed2002

[Effect of different types of counterion on the electronic structure of an antitumor polyoxomolybdate [Mo7O24]6-].

The electronic structure of a Lindqvist type [Mo7O24]6- anion with 5 different types of counterion (K+, Na+, NH4+, [NH3Pr]+ and [NH3Pri]+) was calculated by using the Discrete Variational Method coupled with Density Functional Theory (DFT-DVM). It could be concluded through variance analysis to the calculated results that the type of counterion does not influence remarkably the electronic structure of [Mo7O24]6- anions. Perhaps it can be used to explain the experiment fact that the polyoxomolybdate structure of the Mo7O24 framework is apparently of critical significance to antitumor action. On these grounds we forecast that two other lindqvist type heptamolybadates(their counterions are Na+ and [NH3Pr]+ respectively) may also exhibit antitumor activities.

Antineoplastic Agents↗
PubMed2002

Electronic structure of wet DNA.

The electronic properties of a Z-DNA crystal synthesized in the laboratory are investigated by means of density-functional theory Car-Parrinello calculations. The electronic structure has a gap of only 1.28 eV. This separates a manifold of 12 occupied states which came from the pi guanine orbitals from the lowest empty states in which the electron is transferred to the Na+ from PO-4 groups and water molecules. We have evaluated the anisotropic optical conductivity. At low frequency the conductivity is dominated by the pi-->Na+ transitions. Our calculation demonstrates that the cost of introducing electron holes in wet DNA strands could be lower than previously anticipated.

Crystallization↗
PubMed2004

Heteronuclear 2D (1H-13C) MAS NMR resolves the electronic structure of coordinated histidines in light-harvesting complex II: assessment of charge transfer and electronic delocalization effect.

In a recent MAS NMR study, two types of histidine residues in the light-harvesting complex II (LH2) of Rhodopseudomonas acidophila were resolved: Type 1 (neutral) and Type 2 (positively charged) (Alia et al. J. Am. Chem. Soc. ). The isotropic (13)C shifts of histidines coordinating to B850 BChl a are similar to fully positively charged histidine, while the (15)N shift anisotropy shows a predominantly neutral character. In addition the possibility that the ring currents are quenched by overlap in the superstructure of the complete ring of 18 B850 molecules in the LH2 complex could not be excluded. In the present work, by using two-dimensional heteronuclear ((1)H-(13)C) dipolar correlation spectroscopy with phase-modulated Lee-Goldburg homonuclear (1)H decoupling applied during the t(1) period, a clear and unambiguous assignment of the protons of histidine interacting with the magnesium of a BChl a molecule is obtained and a significant ring current effect from B850 on the coordinating histidine is resolved. Using the ring current shift on (1)H, we refine the (13)C chemical shift assignment of the coordinating histidine and clearly distinguish the electronic structure of coordinating histidines from that of fully positively charged histidine. The DFT calculations corroborate that the coordinating histidines carry approximately 0.2 electronic equivalent of positive charge in LH2. In addition, the data indicate that the ground state electronic structures of individual BChl a /His complexes is largely independent of supermolecular pi interactions in the assembly of 18 B850 ring in LH2.

Animals↗
PubMed2006

Reinvestigation of the method used to map the electronic structure of blue copper proteins by NMR relaxation.

A previous method for mapping the electron spin distribution in blue copper proteins by paramagnetic nuclear magnetic resonance (NMR) relaxation (Hansen DF, Led JJ, 2004, J Am Chem Soc 126:1247-1253) suggested that the blue copper site of plastocyanin from Anabaena variabilis (A.v.) is less covalent than those found for other plastocyanins by other experimental methods, such as X-ray absorption spectroscopy. Here, a detailed spectroscopic study revealed that the electronic structure of A.v. plastocyanin is similar to those of other plastocyanins. Therefore, the NMR approach was reinvestigated using a more accurate geometric structure as the basis for the mapping, in contrast to the previous approach, as well as a more complete spin distribution model including Gaussian-type natural atomic orbitals instead of Slater-type hydrogen-like atomic orbitals. The refinement results in a good agreement between the electron spin density derived from paramagnetic NMR and the electronic structure description obtained by the other experimental methods. The refined approach was evaluated against density functional theory (DFT) calculations on a model complex of the metal site of plastocyanin in the crystal phase. In general, the agreement between the experimental paramagnetic relaxation rates and the corresponding rates obtained by the DFT calculations is good. Small deviations are attributed to minor differences between the solution structure and the crystal structure outside the first coordination sphere. Overall, the refined approach provides a complementary experimental method for determining the electronic structure of paramagnetic metalloproteins, provided that an accurate geometric structure is available.

Anabaena variabilis↗
PubMed2005

Pressure dependence in the methyl vinyl ketone + OH and methacrolein + OH oxidation reactions: an electronic structure study.

High-level electronic structure calculations were carried out for the study of the reaction pathways in the OH-initiated oxidations of methyl vinyl ketone (MVK) and methacrolein (MACR). For the two conformers of MVK (called synperiplanar and antiperiplanar), the addition channels of OH to the terminal and central carbon atom of the double bond dominate the overall rate constant, whereas the abstraction of the methyl hydrogen atoms has no significant kinetic role. In the case of MACR, only the antiperiplanar conformer is important in its reactivity. In addition, the lower Gibbs free energy barrier for MACR corresponds to the aldehydic hydrogen abstraction reaction, which will be somewhat more favorable than the addition processes. The subtle balance between the different pathways (additions versus abstractions) serves to give an understanding of the pressure dependence of the rate constants of these tropospheric oxidation processes.

Acrolein↗
PubMed1997

Density Functional Calculations of Electronic Structure, Charge Distribution, and Spin Coupling in Manganese-Oxo Dimer Complexes.

We have calculated the electronic structures of five different manganese-oxo dimer complexes using density functional methods combined with the broken symmetry and spin projection concepts. The number of carboxylate, oxo, and peroxo bridging ligands was varied, and the terminal ligands were triazacyclononane (TACN). The formal Mn oxidation states varied from Mn(III)(2) and Mn(III)Mn(IV) to Mn(IV)(2). These complexes have been synthesized and their X-ray structures and magnetic properties measured previously. We have calculated the Heisenberg spin coupling parameters J and resonance delocalization parameters B for all of these systems. Despite the very small energy differences involved, there is a good correspondence between calculated and experimental Heisenberg J parameters. We have analyzed potential changes in the calculated effective Heisenberg coupling J(eff) for the mixed-valence Mn(III)Mn(IV) complexes when partial or complete delocalization due to the B parameter is taken into account. These changes depend also on the energy of the relevant intervalence band. Surprisingly, in the two mixed-valence systems studied, the high spin S = (5)/(2) state lies below S = (7)/(2). This is consistent with spin coupling between Mn with site spins S(1) = 1, S(2) = (3)/(2), corresponding to intermediate spin Mn(I) and Mn(II) respectively, instead of the coupling expected from the formal oxidation states, S(1) = 2, S(2) = (3)/(2) from high spin Mn(III) and Mn(IV). The spin and charge distributions in the broken symmetry ground states are also consistent with intermediate spin S(1) = 1, S(2) = (3)/(2). The calculated charge distributions show strong metal-ligand covalency. In fact, as the formal oxidation states of the Mn sites increase, the net Mn charges generally show a slow decrease, consistent with a very strong ligand --> metal charge transfer, particularly from &mgr;-oxo or &mgr;-peroxo ligands. TACN is a better donor ligand than carboxylate, even when calculated on a per donor atom basis. The ligand atom charge transfer order is peroxo >/= oxo >> TACN > acetate. The TACN > acetate ordering is expected from the spectrochemical series, but the strong charge transfer and strong metal-ligand covalency of peroxo and oxo ligands with the Mn sites cannot be simply related to their positions in the spectrochemical series. In the Mn(IV)(2)(&mgr;-O)(2)(&mgr;-O(2))(TACN)(2), each peroxo oxygen has a small charge (-0.3), much less than found for each &mgr;-O atom (-0.7). The high-spin S = 3 state lies quite low in energy, 8 kcal/mol from our calculations and about 4 kcal/mol based on the experimental Heisenberg spin coupling parameters. Potential molecular oxygen dissociation pathways involving a spin S = 1 state are discussed. Effective ligand field diagrams are constructed from the calculated energy levels which display the competition between spin polarization splitting and the ligand field t(2g)-e(g) splitting and allow comparisons of electronic structure among different complexes. The electronic structure and spin coupling of these complexes was also compared to the corresponding "core-only" complexes where both TACN ligands were removed, yielding a far weaker ligand field. There is a strong ferromagnetic shift in the "core-only" complexes compared with the complete TACN complexes, also showing the effects of a weaker ligand field.

Journal Article↗
PubMed2005

Halogens in competition: electronic structure of mixed dihalobenzenes.

The electronic structure of all isomeric dihalobenzenes C6H4XY (X, Y = Cl, Br, I) has been investigated by HeI/HeII photoelectron spectroscopy, Green's functions calculations, and comparison with the spectra of related dihalobenzenes C6H4X2 (X = Cl, Br, I). The careful analysis of measured pi orbital and halogen lone pair ionization energies enabled us to describe substituent effects in terms of resonance, inductive, steric, and spin-orbit coupling interactions.

Journal Article↗
PubMed2000

Electronic structure of deformed carbon nanotubes

Electronic structure of deformed carbon nanotubes varies widely depending on their chirality and deformation mode. We present a framework to analyze these variations by quantifying the dispersion relation and density of states. The theory is based on the Huckel tight-binding model and confirmed by four orbital tight-binding simulations of nanotubes under stretching, compression, torsion, and bending. It unriddles and unifies previous band gap studies and predicts the shifting, merging, and splitting of Van Hove singularities in the density of state, and the zigzag pattern of band gap change with strains. Possible applications to nanotube devices and spectroscopy research are also presented.

Journal Article↗
PubMed1994

Analysis of the optical absorption and magnetic-circular-dichroism spectra of peanut peroxidase: electronic structure of a peroxidase with biochemical properties similar to those of horseradish peroxidase.

The electronic structures of the cationic isoenzyme of peanut peroxidase, horseradish peroxidase (isoenzyme C) and bovine liver catalase are compared through analysis of their optical absorption and magnetic c.d. (m.c.d.) spectral properties. The spectral data for the native resting states and compounds I and II of peanut peroxidase (PeP) are reported. The absorption and m.c.d. data for the native PeP exhibit bands characteristic of the high-spin ferric haem. The absorption spectrum of PeP compound I closely resembles that observed for the HRP compound I species. The m.c.d. data for PeP I clearly identifies that ring oxidation has occurred. One-electron reduction forms the PeP compound II species. The absorption and m.c.d. spectra recorded for PeP II exhibit the well-resolved spectral characteristics previously observed for both HRP compound II and catalase compound II. The spectral data of PeP with HRP and catalase are compared. The data clearly indicate that the m.c.d. spectral patterns of both plant peroxidases (PeP and HRP) are very similar and, therefore, the electronic structures of their resting states, and as well their primary and secondary compounds, must be similar. The m.c.d. data suggest that, while the compound I species of PeP and HRP belong to one electronic class, catalase compound I belongs to a different class. These data emphasize how the ground states of these two classes of oxidized haem, may be characterized as predominantly 2A2u (PeP I and HRP I) or 2A1u (catalase I). Peanut peroxidase is the second plant peroxidase for which the electronic structure of the compound I intermediate has been studied using the m.c.d. technique. The similarities with horseradish peroxidase allow us to suggest that plant peroxidases may operate by the same general mechanism, in spite of the low degree of sequence similarity between their polypeptide chains.

Animals↗
PubMed2006

Dynamic electronic structure of a Au/TiO2 catalyst under reaction conditions.

The electronic structure of a highly active Au/TiO2 powder catalyst was probed in situ by synchrotron X-ray photoelectron spectroscopy (XPS) in the 10-1 mbar range. The electronic structure of the Au component was found to respond sensitively to changes in temperature and indicated the absence of bulklike metallic Au under the conditions of highest catalytic activity. Concurrent modification of interfacial sites adjacent to Au on the TiO2 support was not evident from the Ti photoemission, but may have been below the detection limit of XPS.

Journal Article↗
PubMed2006

Theoretical investigations on the geometric and electronic structures of phenylene-acetylene macrocycles.

The geometric and electronic structures of a series of conjugated macrocycles (phenylene-acetylene macrocycles, PAMs) have been studied theoretically with ab initio and semiempirical molecular orbital methods. The ab initio calculations at the HF/6-31G* level demonstrate that the model molecules may have a planar conformation. Bigger macrocycles, for example, 7PAM, 8PAM, and 9PAM, result in several energy minima. The boatlike conformation is the most energetically favored form. Based on the conformational analysis, a novel method for analyzing the ring-strain energy was proposed and used. In view of their potential applications as electronic materials, the electronic structures of a series of PAMs are also investigated. The LUMO-HOMO gaps of the planar PAMs show an odd-even difference behavior. In addition, the HOMOs of the planar species 3PAM, 5PAM, 7PAM, and 9PAM are doubly degenerated.

Acetylene↗
PubMed2004

Inhomogeneous electronic structure probed by spin-echo experiments in the electron doped high-Tc superconductor Pr1.85Ce0.15CuO4-y.

63Cu nuclear magnetic resonance spin-echo decay rate (T-12) measurements are reported for the normal and superconducting states of a single crystal of Pr(1.85)Ce(0.15)CuO(4-y) in a magnetic field B(0)=9 T over the temperature range 2<T<200 K. The spin-echo decay rate is temperature dependent for T<55 K and has a substantial dependence on the radio frequency (rf) pulse parameters below T approximately 25 K. This dependence indicates that T-12 is strongly effected by a local magnetic field distribution that can be modified by the rf pulses, including ones that are not at the nuclear Larmor frequency. The low-temperature results are consistent with the formation of a static inhomogeneous electronic structure that couples to the rf fields of the pulses.

Journal Article↗
PubMed2006

Synthesis, molecular and electronic structure, and TDDFT and TDDFT-PCM study of the solvatochromic properties of (Me2Pipdt)Mo(CO)4 complex (Me2Pipdt = N,N'-dimethylpiperazine-2,3-dithione).

The synthesis, spectroscopic, and structural characterization of the (Me2Pipdt)Mo(CO)4 complex (Me2Pipdt = N,N'-piperazine-2,3-dithione) are presented in this paper. The title complex crystallizes in the P2(1)/n space group with a = 25.541(3) A, b = 10.3936(14) A, c = 10.9012(12) A, beta = 92.261(9) degrees , V = 2891.6(6) A(3), and Z = 8. Gas- and solution-phase structural and electronic features of (Me2Pipdt)Mo(CO)4 and Me2Pipdt have been investigated using density functional theory. The molecular structure underscores the flexibility of the NC(S)C(S)N fragment in both the free ligand and the metal complex. On the basis of structural, spectroscopic, and theoretical results, the bidentate ligand in (Me2Pipdt)Mo(CO)4 is considered to be in the dithione, not dithiolate, form. Time-dependent density functional theory has been used for the investigation of the excited states and solvatochromic properties of (Me2Pipdt)Mo(CO)4. The calculated vertical excitation energies in solution are consistent with the experimental data, showing that the metal-to-ligand charge-transfer transitions, in both the visible and UV regions, dominate over the ligand-based pi-pi transitions.

Biomimetic Materials↗
PubMed1997

An Experimental and Theoretical Study of the Electronic Structure of Zinc Thiophenolate-Capped Clusters.

The electronic structure of a series of thiophenolate-capped ionic/neutral clusters ([Zn(SPh)(4)](2)(-) (1); [Zn(4)(&mgr;(2)-SPh)(6)(SPh)(4)](2)(-) (2); Zn(10)(&mgr;(3)-S)(4)(&mgr;(2)-SPh)(12) (3); and [Zn(10)(&mgr;(3)-S)(4)(&mgr;(2)-SPh)(12)(SPh)(4)](4)(-) (4), Ph = phenyl), indicated as supertetrahedral fragments and possible molecular models of cubic ZnS, has been investigated by coupling density functional calculations to UV electronic and X-ray photoelectron (XP) spectroscopy. Theoretical outcomes indicate that, on passing from the tetrametallic to the decametallic clusters, there is a modification in the nature of the outermost occupied and lowermost unoccupied molecular orbitals. Actually, both in 1 and in 2 the frontier orbitals are delocalized and mainly composed of the S 3p pairs strongly mixed with the Ph pi levels (the HOMOs) and of the linear combinations of Ph pi orbitals, the LUMOs. At variance to that, in 3 and 4 both the HOMO and LUMO are highly localized, the former on &mgr;(3)-S atoms occupying C(3)(v)() coordinatively unsaturated tetrahedral positions and the latter on peripheral Zn atoms. The nature of the electronic levels involved in the UV absorption bands is discussed, and the agreement between theory and experiment is satisfactory. Neither experimental nor theoretical electronic excitation energies are influenced by the cluster size. Moreover, XPS data match quite well variations of the Zn and S gross atomic charges along the series. The different Zn-S bonding scheme characterizing terminal, &mgr;(2)-bridging, and &mgr;(3)-pyramidal S atoms allows a rationalization of the cluster behavior in solution. Along the investigated series, the only species reasonably mimicking both the structural arrangement and the electronic structure of the solid ZnS is Zn(10)(&mgr;(3)-S)(4)(&mgr;(2)-SPh)(12), which can be considered a molecular model of ZnS nonpolar surfaces.

Journal Article↗
PubMed2003

NMR investigation of the heme electronic structure in deoxymyoglobin possessing a fluorinated heme.

The heme electronic structures of deoxymyoglobins (deoxy-Mbs) reconstituted with 13,17-bis(2-carboxylatoethyl)-3,8-diethyl-2,12,18-trimethyl-7-(trifluoromethyl)porphyrinatoiron(III) (7-PF), 13,17-bis(2-carboxylatoethyl)-3,7-difluoro-2,8,12,18-tetramethylporphyrinatoiron(III) (3,7-DF), and 13,17-bis(2-carboxylatoethyl)-3,8-diethyl-2-fluoro-7,12,18-trimethylporphyrinatoiron(III) (2-MF) have been characterized by (1)H and (19)F NMR. The analysis of heme methyl proton shift patterns of the hemes in their bis-cyano forms demonstrated that, owing to the substitution of a strongly electron-withdrawing perfluoromethyl group, CF(3), to porphyrin, the porphyrin pi-system of 7-PF is more significantly distorted from four-fold symmetry than those of the ring-fluorinated hemes, 3,7-DF and 2-MF. The presence of the heme orientation disorder resulted in the observation of the two well-resolved (19)F signals in the spectra of deoxy-Mbs possessing 7-PF and 2-MF. The (19)F signals of deoxy-Mb possessing 7-PF exhibited a relatively large difference in paramagnetic shift (approximately 30 ppm), despite their small paramagnetic shifts (approximately 30 ppm), supporting the significant contribution of a pi spin delocalization mechanism in this Mb due to the d-electron configuration derived from the (5)E ground state. On the other hand, (19)F signals of deoxy-Mbs with 3,7-DF as well as 2-MF exhibited large paramagnetic shifts (approximately 250 ppm) with a relatively small difference in the paramagnetic shift (approximately 20 ppm), indicating the predominant contribution of spin delocalization, due to a d-electron configuration derived from the (5)B(2) ground state. These results demonstrate for the first time that the relative contributions of the orbital ground states derived from (5)E and (5)B(2) states to the heme electronic structure in deoxy-Mb are affected by the distortion of the porphyrin pi-system exerted by chemical properties of the heme peripheral side-chains.

Chemical Phenomena↗