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At least 127 records · Page 7Linked to original sources
PubMed2006

Abiotic factors control invasion by Argentine ants at the community scale.

1. A prominent and unresolved question in ecology concerns why communities differ in their susceptibility to invasion. While studies often emphasize biotic resistance, it is less widely appreciated how the physical environment affects community vulnerability to invasion. 2. In this study we performed field experiments to test how abiotic variation directly and indirectly influences the extent to which Linepithema humile Mayr (Argentine ants) invade seasonally dry environments in southern California. 3. In controlled and replicated experiments involving drip irrigation, we demonstrate (i) that elevated levels of soil moisture increased both the abundance of Argentine ants and their ability to invade native ant communities and (ii) that cessation of irrigation caused declines in the abundance of Argentine ants and led to their withdrawal from previously occupied areas. 4. Because drip irrigation stimulated plant growth, in an additional experiment we manipulated both soil moisture and plant cover to assess the direct vs. indirect effects of added water on the abundance of L. humile. 5. Local abundance of Argentine ants increased in irrigated plots but was 38% higher in irrigated plots with plants compared to irrigated plots where plant growth was suppressed. The results of this experiment thus argue for a direct role of soil moisture in influencing Argentine ant abundance but suggest that that the indirect effects of added water may also be important. 6. Our study illustrates more generally that fine-scale variation in the physical environment can control whether communities become invaded by non-native species and suggests that an understanding of community susceptibility to invasion will be improved by a better appreciation of interactions between the biotic and abiotic environment.

Animals↗
PubMed1999

The importance of human ecology at the threshold of the next millennium: how can population growth be stopped?

Ecology is defined as the set of complex interactions between the biotic and abiotic environments. Human ecology concerns principally the population ecology "only" of Homo sapiens, but it also includes all aspects of global ecology because humans are the most important species. Human demography is characterized by a recent decline in mortality and fertility rates. These demographic transitions have largely been completed in industrialized countries, but not in the 140 developing countries. Approximately 100 countries are following the same demographic pattern as industrialized countries, however with a time delay of several generations. China has effectively reduced its population increase by means that would be unacceptable in Western democracies. Some 44 developing countries still show increasing population growth and no detectable demographic transition in birth rate. Thus one part of the world shows limited (and, in the long run, shrinking) population growth, and another continues with a strong increase. All populations are limited in their development by their sustainability by their environment, for example, food and energy resources, and the extent of pollution which the use of these resources produces. It is argued that in the case of human population the limits of sustainability have already been reached with the 6 billion humans alive today, since at least 20% of these suffer from hunger, natural resources are overexploited, and biodiversity is threatened. In the coming 200 years it is more likely that the total population will substantially oscillate rather than approach the predicted 12 billion. The most important goal of human ecology should therefore be to slow population growth as far as possible.

Demography↗
PubMed2004

Function and regulation of plant invertases: sweet sensations.

The disaccharide sucrose and the cleavage products glucose and fructose are the central molecules for carbohydrate translocation, metabolism and sensing in higher plants. Invertases mediate the hydrolytic cleavage of sucrose into the hexose monomers. Plants possess three types of invertases, which are located in the apoplast, the cytoplasm and the vacuole, respectively. It has become evident that extracellular and vacuolar invertase isoenzymes are key metabolic enzymes that are involved in various aspects of the plant life cycle and the response of the plant to environmental stimuli because their substrates and reaction products are both nutrients and signal molecules. Invertases, alone or in combination with plant hormones, can regulate many aspects of the growth and development of plants from gene expression to long-distance nutrient allocation and are involved in regulating carbohydrate partitioning, developmental processes, hormone responses and biotic and abiotic interactions.

Carbohydrate Metabolism↗
PubMed2002

Ecology and seasonal variation of microalgal community in an oil refinery effluent holding pond: monitoring and assessment.

The microalgal community as primary producers has to play a significant role in the biotic and abitoic interactions of any aquatic ecosystem. Whenever a community is exposed to a pollutant, responses can occur because individuals acclimate to pollutant caused changes and selection can occur favouring resistant genotypes within a population and selection among species can result in changes in community structure. The microalgal community of industrial effluent treatment systems are continuously exposed to pollutants and there is little data available on the structure and seasonal variation of microalgal community of industrial effluent holding ponds, especially of a complex effluent like that of refinery. The aim of the present study was to investigate the annual variation in the ecology, biomass, productivity and community structure of the algal community of a refinery effluent holding pond. The results of the study showed the pond to be a eutrophic system with a resistant microalgal community with distinct seasonal variation in species composition.

Ecology↗
PubMed2002

Drought regulation of GST8, encoding the Arabidopsis homologue of ParC/Nt107 glutathione transferase/peroxidase.

Glutathione transferases (GST; EC 2.5.1.18) have been involved in many biotic and abiotic interactions of plants with their environment, but very little information is available on their regulation and possible role in drought tolerance. The GST8 gene of Arabidopsis thaliana encodes, as assessed by phylogenetic analysis, the homologue of an extremely conserved subgroup of Tau GSTs. During rapid dehydration of seedlings and progressive drought stress of mature plants, GST8 transcript levels increased following slower kinetics than RNAs for dehydration responsive genes RD29A and B, and strictly paralleled, in a mostly ABA independent manner, expression of oxidative stress marker PRX. GST8 RNA levels were also consistently increased by oxidative stress, high doses of auxin or cytokinin, and to a lesser extent, by wounding. RNA levels of ERD13, a previously described rapid dehydration responsive GST of the Phi class, were not co-regulated with those of GST8. Our results suggest that a drought-associated oxidative stress induces accumulation of GST8, whose function could be to counteract the effect of higher ROS production in stressed plants

Journal Article↗
PubMed1986

A conceptual model for primary productivity, decomposition and nitrogen cycling in the Chihuahuan creosotebush desert.

The conceptual framework for a simulation model of primary productivity, decomposition and nitrogen cycling in a shrub-dominated desert ecosystem in southern New Mexico is presented. This model is based on our previous attempt to simulate carbon allocation patterns in the desert shrub Larrea tridentata Cov., which demonstrated that moisture patterns alone are insufficient to predict desert productivity. These results, as well as others, suggest that mineral nutrients, especially nitrogen, may also be an important determinant of productivity in arid environments. Our current research in the Chihuahuan desert is directed towards elucidating the numerous biotic and abiotic interactions that determine the rates and directions of carbon, nitrogen and water fluxes in this ecosystem. The development of this working model will serve as a tool to accomplish three major objectives: (1) to synthesize the large amount of existing data on decomposition and nitrogen cycling in deserts, (2) to quantify our present state of knowledge about the structure and function of ecosystem components important in carbon and nitrogen dynamics in deserts, and (3) to address hypotheses concerning the complex mechanisms of interactions and feedbacks among the organisms involved in carbon and nitrogen exchanges in deserts.

Journal Article↗
PubMed1999

Growth and survivorship of dipterocarp seedlings: differences in shade persistence create a special case of dispersal limitation.

A series of growth experiments and observations on natural populations have been carried out on dipterocarp species of contrasting ecology growing in artificial gaps and the forest understorey. These studies have demonstrated that although differences exist between species in photosynthetic and growth responses to the high-light environment, competition for light in canopy gaps is highly asymmetrical and tends to reinforce any pre-existing dominance hierarchy. We propose that differences in seedling persistence in forest canopy shade are highly influenced by species-specific biotic and abiotic interactions. Our experiments suggest that as seedlings, dipterocarp species trade off traits which enhance persistence and growth in shade against those that enhance their ability to exploit gaps. Less competitive species survive for progressively longer periods of time after a gregarious fruiting event. This leads to significant shifts with time in the number of species present in the seedling bank and hence in the importance of interspecific competition in determining which species dominates regrowth in gaps. We propose that this special case of dispersal limitation is more likely to account for coexistence of dipterocarp species than differences in growth responses to gaps of different size, with stochastic and environmental variables interacting to determine species distribution and abundance.

Ecosystem↗
PubMed2003

Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana.

Genetic markers such as single nucleotide polymorphisms (SNPs) are essential tools for positional cloning, association, or quantitative trait locus mapping and the determination of genetic relationships between individuals. We identified and characterized a genome-wide set of SNP markers by generating 10,706 expressed sequence tags (ESTs) from cDNA libraries derived from 6 different accessions, and by analysis of 606 sequence tagged sites (STS) from up to 12 accessions of the model flowering plant Arabidopsis thaliana. The cDNA libraries for EST sequencing were made from individuals that were stressed by various means to enrich for transcripts from genes expressed under such conditions. SNPs discovered in these sequences may be useful markers for mapping genes involved in interactions with the biotic and abiotic environment. The STS loci are distributed randomly over the genome. By comparison with the Col-0 genome sequence, we identified a total of 8051 SNPs and 637 insertion/deletion polymorphisms (InDel). Analysis of STS-derived SNPs shows that most SNPs are rare, but that it is possible to identify intermediate frequency framework markers that can be used for genetic mapping in many different combinations of accessions. A substantial proportion of SNPs located in ORFs caused a change of the encoded amino acid. A comparison of the density of our SNP markers among accessions in both the EST and STS datasets, revealed that Cvi-0 is the most divergent accession from Col-0 among the 12 accessions studied. All of these markers are freely available via the internet.

Arabidopsis↗
PubMed2025

The auxin gatekeepers: Evolution and diversification of the YUCCA family.

The critically important YUCCA (YUC) gene family is highly conserved and specific to the plant kingdom, primarily responsible for the final and rate-limiting step for indole-3-acetic acid (IAA) biosynthesis. IAA is an essential phytohormone, involved in virtually all aspects of plant growth and development. In addition, IAA is involved in fine-tuning plant responses to biotic and abiotic interactions and stresses. While the YUC gene family has significantly expanded throughout the plant kingdom, a detailed analysis of the evolutionary patterns driving this diversification has not been performed. Here, we present a comprehensive phylogenetic analysis of the YUC family, combining YUCs from species representing key evolutionary plant lineages. The evolutionary history of YUCs is complex and suggests multiple recruitment events via horizontal gene transfer from bacteria. We identify and hierarchically classify the YUC family into an early diverging grade, five distinct classes and 41 subclasses. Angiosperm YUC diversity and expansion are explained in the context of protein sequence conservation, as well as spatial and gene expression patterns. The presented YUC gene landscape offers new perspectives on the distribution and evolutionary trends of this crucial family, which facilitates further YUC characterization within plant development and response to environmental change.

Indoleacetic Acids↗
PubMed1986

Effect of Sterilization by Dry Heat or Autoclaving on Bacterial Penetration through Berea Sandstone.

A study was undertaken to determine why bacteria could penetrate lengths of consolidated sandstone (Berea) faster when the sandstone was sterilized by autoclaving than when dry heat (150 degrees C, 3 h) was used. Changes in permeability, porosity, and pore entrance size of the rock as a result of autoclaving were not sufficient to explain the differences in penetration times observed, but electron dispersion spectroscopy and electron microscopy of the rock revealed changes in mineral composition and clay morphology. Autoclaved cores contained more chloride than dry-heated cores, and the clays of autoclaved cores were aggregated and irregularly shaped. Therefore, the decreases in bacterial penetration rates caused by autoclave sterilization were probably the result of a change in surface charge of the pores of the rock and of a reduction in surface area of clays available for adhesion. The results implied that dry-heat sterilization was preferable to autoclaving when examining biotic and abiotic interactions in a native-state rock model.

Journal Article↗
PubMed1997

Fate and activity of microorganisms introduced into soil.

Introduced microorganisms are potentially powerful agents for manipulation of processes and/or components in soil. Fields of application include enhancement of crop growth, protection of crops against plant-pathogenic organisms, stimulation of biodegradation of xenobiotic compounds (bioaugmentation), and improvement of soil structure. Inoculation of soils has already been applied for decades, but it has often yielded inconsistent or disappointing results. This is caused mainly by a commonly observed rapid decline in inoculant population activity following introduction into soil, i.e., a decline of the numbers of inoculant cells and/or a decline of the (average) activity per cell. In this review, we discuss the available information on the effects of key factors that determine the fate and activity of microorganisms introduced into soil, with emphasis on bacteria. The factors addressed include the physiological status of the inoculant cells, the biotic and abiotic interactions in soil, soil properties, and substrate availability. Finally, we address the possibilities available to effectively manipulate the fate and activity of introduced microorganisms in relation to the main areas of their application.

Bacterial Physiological Phenomena↗
PubMed2024

Oceanic islands act as drivers for the genetic diversity of marine species: Cardita calyculata (Linnaeus, 1758) in the NE Atlantic as a case-study.

Geographic distribution, as well as evolutionary and biogeographic processes and patterns of marine invertebrate benthic species are strongly shaped by dispersal ability during the life cycle. Remote oceanic islands lie at the brink of complex biotic and abiotic interactions which have significantly influenced the biodiversity patterns we see today. The interaction between geological environmental change and taxon-specific dispersal modes can influence species evolutionary patterns, eventually delimiting species-specific biogeographic regions. In this study, we compare the population genetic patterns of the marine bivalve Cardita calyculata in the northeast Atlantic, discussing the role of Macaronesian islands during past climatic cycles. The genetic structure and diversity patterns were outlined based on SSR-GBAS loci of 165 individuals and on the mitochondrial COI marker of 22 individuals from the Canary Islands, Madeira, Azores and the Mediterranean. The highly structured genetic pattern found among regions and within archipelagos suggests the central role of oceanic islands in promoting the divergence of the species in both the NE Atlantic and the Mediterranean. The high degree of divergence in the COI dataset (> 7%) suggests the existence of potential cryptic speciation that needs to be further explored with a more comprehensive sampling. Such patterns are only congruent with a scenario where C. calyculata populations were maintained during glacial/interglacial cycles, supporting the role of the studied archipelagos as drivers of diversity for marine biota. We stress the importance of developing studies for species with various life history and dispersal modes. In such a way, a more profound understanding of the biogeographic and evolutionary significance of oceanic islands can catalyse directed conservation efforts, especially in the context of the ongoing climate crisis.

Animals↗
PubMed2004

Soil microbial population and enzyme activity related to grazing pressure in alpine meadows of Nanda Devi Biosphere Reserve.

The present study aims to analyze the interaction of prevailing biotic pressure on soil environment with emphasis on its physicochemical and microbiological characteristics determining soil fertility status and thus supporting plant and animal biodiversity in Nanda Devi Biosphere Reserve (NDBR) which is located in northern part of Uttaranchal hills between 79 degrees 40'E to 80 degrees 05'E longitude and 30 degrees 17'N to 30 degrees 41'E latitude. The experimental results revealed that the physico-chemical characteristics (viz., moisture, pH, EC, C, N, P, K, CEC) of soil were maximum in moderately grazed meadow and minimum in intensively grazed meadow. Soil microbial analysis measured in terms of total viable count (TVC) exhibited grazing sensitivity trend being maximum population of bacteria > fungi > actinomycetes. The soil microbial population was positively correlated with soil respiration, dehydrogenase activity, acid phosphatase and microbial biomass, which exhibited uneven trend with grazing pressure. Soil from moderately grazed meadow showed highest microbial count and enzyme activities, whilst intensively grazed meadow showed lowest microbial count and enzyme activities. This depicts the beneficial role of prescribed grazing up to limited extent in management of soil fertility, which might have supported luxuriant growth of a variety of grasses.

Actinobacteria↗
PubMed2004

Vegetation pattern related tc grazing pressure in alpine meadows of Nanda Devi Biosphere Reserve.

The present study aims to analyze the interaction of prevailing biotic pressure on plant species diversity in Nanda Devi Biosphere Reserve (NDBR) which lies in northern part of Uttaranchal hills between 79 degrees 40'E to 80 degrees 05'E longitude and 30 degrees 17' N to 30 degrees 41'N latitude and covers an area of 2236.7 km2. A total of 75 species has been found which included the herbaceous plants viz., grasses, sedges and forbs. Generally, the plants have a short life span of 3-4 months. However, few species persist throughout the growth period i.e. May-October. Phytosociological study performed in plots of varying slope and grazing pressure intensity revealed that the dominant grasses were Danthonia cachemyriana and Poa annua and dominant forbs were Trachydium roylei and Geum elatum in all the plots. Grasses were abundant on west facing slopes while forbs preferred the even topography of east facing meadows. The grasses and sedges together had optimum density during July and August. In general, short lived species exhibited more diversity for one or two months whilst the long lived species exhibited optimum diversity althrough the snow free period. The species diversity is maximum (100%) in moderately grazed bughiyals i.e. Pacchu and minimum in intensively grazed bughiyals i.e. Martoli. The species distribution among the plots was 60-90% contagious and 11.2-38.0% randomirrespective of grazing pressure, thus highlighting the significance of grazing pressure in management of alpine meadows.

Altitude↗
PubMed1996

Checkpoints in the life-cycle of Cassiopea spp.: control of metagenesis and metamorphosis in a tropical jellyfish.

Experimental data reveal that most, if not all, major events in the metagenetic life-cycle of Cassiopea spp. at these checkpoints depend on the interaction with specific biotic and physical cues. For medusa formation within a permissive temperature range by monodisk strobilation of the polyp, the presence of endosymbiotic dinoflagellates is indispensable. The priming effect of the algal symbionts is not primarily coupled with photosynthetic activity, but was found to be enhanced in the light. Budding of larva-like propagules by the polyp, however, is independent from such zooxanthellae. On the other hand the budding rate is influenced by various rearing conditions. Exogenous chemical cues control settlement and metamorphosis into scyphopolyps of both sexually produced planula larvae and asexual propagules. In laboratory experiments two classes of metamorphosis inducing compounds have been detected: a family of oligopeptides, featuring a proline-residue next to the carboxyterminal amino acid, and several phorbol esters. Using the peptide 14C-DNS-GPGGPA, induction of metamorphosis has been shown to be receptor-mediated. Furthermore, activation of protein kinase C, a key enzyme within the inositolphospholipid-signalling pathway appears to be involved in initiating metamorphosis. In mangrove habitats of Cassiopea spp. planula larvae specifically settle and metamorphose on submerged, deteriorating mangrove leaves from which biologically active fractions have been isolated. The chemical characterisation and comparison of these compounds from the natural environment with the properties and mode of action of oligopeptide inducers is in progress.

Amino Acid Sequence↗
PubMed2003

Effects of temperature and turbulence on the predator-prey interactions between a heterotrophic flagellate and a marine bacterium.

Biotic and abiotic factors can influence interactions between microbial grazers and their prey, thus impacting both the cycling of biogenic carbon within the surface layer of the ocean and the export of carbon to the deep ocean and higher trophic levels. In this study, microcosm experiments were used to evaluate the combined effect of temperature and turbulence on the growth rate of a marine bacterium (Vibrio splendidus), a protistan predator (Paraphysomonas sp.), and the community grazing impact of Paraphysomonas sp. on V. splendidus. It was found that the artificial turbulence generated (1.35 x 10-1 cm2 s-3) significantly increased the rates of growth of Paraphysomonas sp. at high (>10 degrees C), but not low (<5 degrees C) temperatures, and that turbulence had no effect on the growth of V. splendidus. Both flagellate and bacterial growth were temperature dependent and decreased 4- to 6-fold as temperatures decreased from 15 to 0 degrees C. Bacterial grazing mortality by Paraphysomonas sp. was 1.3- to 2.5-fold greater in the turbulent than static treatments among all four temperatures, and the rates of cell-specific ingestion of bacteria by Paraphysomonas sp. was 2-fold greater at 15 and 10 degrees C in the turbulent than in the static treatment. Hence, this study shows that turbulence can influence nanoflagellate grazing at temperatures >5 degrees C and suggests that at low temperatures, increased viscosity may limit the size of organisms that can be affected by small-scale turbulence.

Animals↗
PubMedDate not supplied

[An experimental study and a mathematical model of interactions in mixed culture of invertebrates and algae in the "producer-consumer" aquatic biotic cycle].

An experimental investigation was carried out, and a mathematical model of interaction between invertebrates (infusoria Paramecium caudatum and rotifera Brachionus plicatilis) and algae (Chlorella vulgaris and Scenedesmus quadricauda) in the "producer-consumer" aquatic biotic cycle with spatially divided links was constructed. The model describes the dynamics of a mixed culture of infusoria and rotifera in the "consumer" link, when they consume a mixed culture of algae coming from the "producer" link. A negative influence of products of algae Scenedesmus metabolism upon the reproduction of infusoria P. caudatum was revealed. Taking this into account, a qualitative coincidence of the results of mathematical modeling with experimental data was obtained. It was shown that the co-existence of mixed algae culture in the "producer" link with invertebrates in the "consumer" link in the "producer-consumer" aquatic biotic cycle is impossible because of the displacement of infusoria P. caudatum by rotifera Brachionus plicatilis.

Animals↗
PubMed2004

Thermal and chlorophyll-fluorescence imaging distinguish plant-pathogen interactions at an early stage.

Different biotic stresses yield specific symptoms, owing to their distinct influence on a plant's physiological status. To monitor early changes in a plant's physiological status upon pathogen attack, chlorophyll fluorescence imaging (Chl-FI) and thermography, which respectively visualize photosynthetic efficiency and transpiration, were carried out in parallel for two fundamentally different plant-pathogen interactions. These non-destructive imaging techniques were able to visualize infections at an early stage, before damage appeared. Under growth-room conditions, a robotized set-up captured time series of visual, thermal and chlorophyll fluorescence images from infected regions on attached leaves. As a first symptom of the plant-virus interaction between resistant tobacco and tobacco mosaic virus (TMV), thermal imaging detected a local rise in temperature while Chl-FI monitored a co-localized increase in fluorescence intensity. Chl-FI also revealed pre-symptomatic high-intensity spots for the plant-fungus system sugar beet-Cercospora beticola. Concomitantly, spots of lower temperature were monitored with thermography, in marked contrast with our observations on TMV-infection in tobacco. Knowledge of disease signatures for different plant-pathogen interactions could allow early identification of emerging biotic stresses in crops, facilitating the containment of disease outbreaks. Presymptomatic monitoring clearly opens perspectives for quantitative screening for disease resistance, either on excised leaf pieces or attached leaves.

Ascomycota↗