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At least 127 records · Page 7Linked to original sources
PubMed2006

Biogeographic evidence for selection on mitochondrial DNA in North Pacific walleye pollock Theragra chalcogramma.

Three major mitochondrial DNA (mtDNA) haplogroups were identified in 5 data sets for North Pacific and Bering Sea walleye pollock. The common haplogroup A showed mirror-image clines on both sides of the North Pacific with high frequencies in southern areas (P(A) > 0.84) and low frequencies in the Bering Sea (P(A) < 0.36). Two additional haplogroups showed complimentary, but weaker, clines in the opposite direction. These clines are unlikely to have arisen by chance during postglacial colonizations of coastal waters in the North Pacific and Bering Sea, and they do not appear to reflect isolation by distance. Contrary to these trends, pollock at the western end of the Aleutian Island Archipelago were genetically more similar to Asian than to North American pollock, a pattern likely reflecting postglacial colonization. Haplogroup F(ST) values for a given haplotype diversity were significantly larger than expected under the island model of migration and random drift, a result implicating natural selection. Frequencies of haplogroup A were highly correlated with sea surface temperature (r > 0.91), whereas frequencies of groups B and C showed negative correlations with temperature. Selection may be operating directly on mtDNA variability or may be mediated through cytonuclear interactions. This biogeographic evidence adds to a growing body of literature indicating that selection may play a greater role in sculpting mtDNA variability than previously thought.

Adaptation, Biological↗
PubMed2004

Evidence for positive selection at the pantophysin (Pan I) locus in walleye pollock, Theragra chalcogramma.

Nucleotide polymorphism at the pantophysin (Pan I) locus in walleye pollock, Theragra chalcogramma, was examined using DNA sequence data. Two distinct allelic lineages were detected in pollock, resulting from three amino acid replacement mutations in the first intravesicular domain of the protein. The common Pan I allelic group, comprising 94% of the samples, was less polymorphic (pi = 0.005) than the uncommon group (pi = 0.008), and nucleotide diversity in both was higher than for two allelic lineages in the related Atlantic cod, Gadus morhua. Phylogenetic analyses of Pan I sequences from these two species did not clearly resolve orthology among allelic groups, in part because of recombination that has occurred between the two pollock lineages. Conventional tests of neutrality comparing polymorphisms within and between homologous regions of the Pan I locus in walleye pollock and Atlantic cod did not detect the effects of selection. This result is likely attributed to low levels of synonymous divergence among allelic lineages and a lack of mutation-drift equilibrium inferred from nucleotide mismatch frequency distributions. However, the ratio of nonsynonymous to synonymous substitutions per site (dN/dS) exceeded unity in two intravesicular domains of the protein and the influence of positive selection at multiple codon sites was strongly inferred through the use of maximum-likelihood analyses. In addition, the frequency spectrum of linked neutral variation showed indirect effects of adaptive hitchhiking in pollock resulting from a selective sweep of the common allelic lineage. Recombination between the two allelic classes may have prevented complete loss of the older, more polymorphic lineage. The results suggest that recurrent sweeps driven by positive selection is the principle mode of evolution at the Pan I locus in gadid fishes.

Adaptation, Biological↗