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PubMed2005

Determination of refractive indices of porcine skin tissues and intralipid at eight wavelengths between 325 and 1557 nm.

We constructed an automated reflectometry system for accurate measurement of coherent reflectance curves of turbid samples and analyzed the presence of coherent and diffuse reflection near the specular reflection angle. An existing method has been validated to determine the complex refractive indices of turbid samples on the basis of nonlinear regression of the coherent reflectance curves by Fresnel's equations. The complex refractive indices of fresh porcine skin epidermis and dermis tissues and Intralipid solutions were determined at eight wavelengths: 325, 442, 532, 633, 850, 1064, 1310, and 1557 nm.

Algorithms↗

PubMed2005

Investigating the enhancement of three-dimensional diffraction tomography by using multiple illumination planes.

The three dimensional (3-D) extension of the two well-known diffraction tomography algorithms, namely, direct Fourier interpolation (DFI) and filtered backpropagation (FBP), are presented and the problem of the data needed for a full 3-D reconstruction is investigated. These algorithms can be used efficiently to solve the inverse scattering problem for weak scatterers in the frequency domain under the first-order Born and Rytov approximations. Previous attempts of 3-D reconstruction with plane-wave illumination have used data obtained with the incident direction restricted at the xy plane. However, we show that this restriction results in the omission of the contribution of certain spatial frequencies near the omegaz axis for the final reconstruction. The effect of this omission is studied by comparing the results of reconstruction with and without data obtained from other incident directions that fill the spatial frequency domain. We conclude that the use of data obtained for incident direction in only the xy plane is sufficient to achieve a satisfactory quality of reconstruction for a class of objects presenting smooth variation along the z axis, while abrupt variations along the z axis cannot be imaged. This result should be taken into account in the process of designing the acquisition geometry of a tomography scanner.

Algorithms↗

PubMed2005

Phasing diffraction data from a stream of hydrated proteins.

We consider the problem of phase determination for continuous diffraction patterns obtained from a beam of identical, aligned large molecules (such as proteins), each coated with a layer of water or vitreous ice. Many laser-aligned molecules are assumed to lie within a wide continuous x-ray beam at any instant. An iterative phasing method is developed to extract the common target structure in three dimensions from diffraction patterns of these doped ice balls. Several measurements of the diffraction intensity in reciprocal space are needed. We found iteratively two boundaries (supports) (between protein and ice and the outer iceball support) by using the charge-flipping and multiple hybrid input-output algorithms, working with multiple sets of measured data. The approach is applied to simulated data from hydrated lysozyme proteins generated by the serial crystallography method of laser-aligned protein-beam diffraction proposed by Spence and Doak [Phys. Rev. Lett. 92, 198102 (2004)]. We consider also the effect of empty ice balls on the patterns. The algorithm can also be used to align images with different randomly chosen origins, so that the same embedded subunits overlap.

Algorithms↗

PubMed2005

Wavefront-guided correction of ocular aberrations: are phase plate and refractive surgery solutions equal?

Wavefront-guided laser eye surgery has been recently introduced and holds the promise of correcting not only defocus and astigmatism in patients but also higher-order aberrations. Research is just beginning on the implementation of wavefront-guided methods in optical solutions, such as phase-plate-based spectacles, as alternatives to surgery. We investigate the theoretical differences between the implementation of wavefront-guided surgical and phase plate corrections. The residual aberrations of 43 model eyes are calculated after simulated refractive surgery and also after a phase plate is placed in front of the untreated eye. In each case, the current wavefront-guided paradigm that applies a direct map of the ocular aberrations to the correction zone is used. The simulation results demonstrate that an ablation map that is a Zernike fit of a direct transform of the ocular wavefront phase error is not as efficient in correcting refractive errors of sphere, cylinder, spherical aberration, and coma as when the same Zernike coefficients are applied to a phase plate, with statistically significant improvements from 2% to 6%.

Computer Simulation↗

PubMed2005

Weighted Zernike expansion with applications to the optical aberration of the human eye.

We propose to use weighted Zernike functions to represent the aberrations of an eye. Methods for computing the phase of an aberrated ophthalmic wavefront in terms of weighted Zernike functions are discussed. In particular, we consider several options for integrating the phase out of its measured slopes. The weighted functions involve a free parameter. Clinical data on subjective refraction and aberration maps of individual subjects are used to determine an estimate for this parameter.

Adult↗

PubMed2005

Study on the effects of monochromatic aberrations in the accommodation response by using adaptive optics.

The effect of asymmetric monochromatic aberrations in the accommodation response was studied by using an adaptive optics (AO) system. This approach permits the precise modification of ocular aberrations during accommodation. The AO system is composed of a real-time Hartmann-Shack wavefront sensor and a membrane deformable mirror with 37 independent actuators. The accommodation response was measured in two subjects with their normal aberrations and with the asymmetric aberrations terms corrected. We found a significant and systematic increase in the response accommodation time, and a reduction in the peak velocity, in both subjects when the aberrations were corrected in real time. However, neither the latency time nor the precision of the accommodation were affected. These results may indicate that the monochromatic aberrations play a role in driving the accommodation response.

Accommodation, Ocular↗

PubMed2005

Guided light and diffraction model of human-eye photoreceptors.

The photoreceptors of the living human eye are known to exhibit waveguide-characteristic features. This is evidenced by the Stiles-Crawford effect observed for light incident near the pupil rim, and by the directional component of light reflected off the retina in the related optical Stiles-Crawford effect. We describe a model for the coupling of light to/from photoreceptors on the basis of waveguide theory that includes diffraction between the eye pupil and the photoreceptor apertures, and we show that valuable insight can be gained from a Gaussian approximation to the mode field. We apply this knowledge to a detailed study of the relationship between the Stiles-Crawford effect and its optical counterpart.

Computer Simulation↗

PubMed2005

Comparison of reconstruction algorithms for optical diffraction tomography.

A recently developed inverse scattering algorithm [A. J. Devaney and M. Dennison, Inverse Probl., 19, 855 (2003) and M. Dennison and A. J. Devaney, Inverse Probl., 20, 1307 (2004)] is described and applied in a computer simulation study of optical diffraction tomography (ODT). The new algorithm is superior to standard ODT reconstruction algorithms, such as the filtered backpropagation algorithm, in applications employing a limited number of scattering experiments (the so-called limited-view case) and also in cases where multiple scattering occurs between the object being interrogated and the (known) background in which the object is embedded. The new algorithm is compared and contrasted with the filtered backpropagation algorithm in a computer simulation of ODT of weakly inhomogeneous cylindrical objects being interrogated in a limited number of scattering experiments employing incident plane waves. Our study has potential applications in biomedical imaging and tomographic microscopy.

Algorithms↗

PubMed2005

Influences of reference plane and direction of measurement on eye aberration measurement.

We explored effects of measurement conditions on wave aberration estimates for uncorrected, axially myopic model eyes. Wave aberrations were initially referenced to either the anterior corneal pole or the natural entrance pupil of symmetrical eye models, with rays traced into the eye from infinity (into the eye) to simulate normal vision, into the eye from infinity and then back out of the eye from the retinal intercepts (into/out of the eye), or out of the eye from the retinal fovea (out of the eye). The into-the-eye and out-of-the-eye ray traces gave increases in spherical aberration as myopia increased, but the into/out-of-the-eye ray trace showed little variation in spherical aberration. Reference plane choice also affected spherical aberration. Corresponding residual aberrations were calculated after the models had been optically corrected, either by placing the object or image plane at the paraxial far point or by modifying corneas to simulate laser ablation corrections. Correcting aberrations by ablation was more complete if the original aberrations were referenced to the cornea rather than to the entrance pupil. For eyes corrected by spectacle lenses, failure to allow for effects of pupil magnification on apparent entrance pupil diameter produced larger changes in measured aberrations. The general findings regarding choice of reference plane and direction of measurement were found to be equally applicable to eyes that lacked rotational symmetry.

Computer Simulation↗

PubMed2005

Extended Nijboer-Zernike approach to aberration and birefringence retrieval in a high-numerical-aperture optical system.

The judgment of the imaging quality of an optical system can be carried out by examining its through-focus intensity distribution. It has been shown in a previous paper that a scalar-wave analysis of the imaging process according to the extended Nijboer-Zernike theory allows the retrieval of the complex pupil function of the imaging system, including aberrations as well as transmission variations. However, the applicability of the scalar analysis is limited to systems with a numerical aperture (NA) value of the order of 0.60 or less; beyond these values polarization effects become significant. In this scalar retrieval method, the complex pupil function is represented by means of the coefficients of its expansion in a series involving the Zernike polynomials. This representation is highly efficient, in terms of number and magnitude of the required coefficients, and lends itself quite well to matching procedures in the focal region. This distinguishes the method from the retrieval schemes in the literature, which are normally not based on Zernike-type expansions, and rather rely on point-by-point matching procedures. In a previous paper [J. Opt. Soc. Am. A 20, 2281 (2003)] we have incorporated the extended Nijboer-Zernike approach into the Ignatowsky-Richards/Wolf formalism for the vectorial treatment of optical systems with high NA. In the present paper we further develop this approach by defining an appropriate set of functions that describe the energy density distribution in the focal region. Using this more refined analysis, we establish the set of equations that allow the retrieval of aberrations and birefringence from the intensity point-spread function in the focal volume for high-NA systems. It is shown that one needs four analyses of the intensity distribution in the image volume with different states of polarization in the entrance pupil. Only in this way will it be possible to retrieve the "vectorial" pupil function that includes the effects of birefringence induced by the imaging system. A first numerical test example is presented that illustrates the importance of using the vectorial approach and the correct NA value in the aberration retrieval scheme.

Algorithms↗

PubMed2005

Image reconstruction in spherical-wave intensity diffraction tomography.

A reconstruction theory for intensity diffraction tomography (I-DT) has been proposed that permits reconstruction of a weakly scattering object without explicit knowledge of phase information. We investigate the I-DT reconstruction problem assuming an incident (paraxial) spherical wave and scanning geometries that employ fixed source-to-object distances. Novel reconstruction methods are derived by identifying and exploiting tomographic symmetries and the rotational invariance of the problem. An underlying theme is that symmetries in tomographic imaging systems can facilitate solutions for phase-retrieval problems. A preliminary numerical investigation of the developed reconstruction methods is presented.

Algorithms↗

PubMed2005

Two-dimensional imaging theory of confocal self-interference microscopy.

A two-dimensional coherent imaging equation is derived for confocal self-interference microscopy (CSIM), which uses a birefringent material to generate an interference pattern in the detection optics. This interference pattern, called a self-interference pattern, sharpens the point-spread function (PSF) along the lateral direction. To derive the imaging equation, an equation for the self-interference pattern is derived. Numerical simulation results based on the imaging equation are presented. One-point response results show a 42.8% reduction in the FWHM of the lateral PSF. Two-point response results show a nearly twofold improvement in two-point resolution.

Algorithms↗

PubMed2006

Analysis of dense-medium light scattering with applications to corneal tissue: experiments and Monte Carlo simulations.

Dense-medium scattering is explored in the context of providing a quantitative measurement of turbidity, with specific application to corneal haze. A multiple-wavelength scattering technique is proposed to make use of two-color scattering response ratios, thereby providing a means for data normalization. A combination of measurements and simulations are reported to assess this technique, including light-scattering experiments for a range of polystyrene suspensions. Monte Carlo (MC) simulations were performed using a multiple-scattering algorithm based on full Mie scattering theory. The simulations were in excellent agreement with the polystyrene suspension experiments, thereby validating the MC model. The MC model was then used to simulate multiwavelength scattering in a corneal tissue model. Overall, the proposed multiwavelength scattering technique appears to be a feasible approach to quantify dense-medium scattering such as the manifestation of corneal haze, although more complex modeling of keratocyte scattering, and animal studies, are necessary.

Computer Simulation↗

PubMed2006

Modified two-flux approximation for identification of radiative properties of absorbing and scattering media from directional-hemispherical measurements.

A modified two-flux approximation is suggested for calculating the hemispherical transmittance and reflectance of a refracting, absorbing, and scattering medium in the case of collimated irradiation of the sample along the normal to the interface. The Fresnel reflection is taken into account in this approach. It is shown that the new approximation is rather accurate for the model transport scattering function. For an arbitrary scattering medium, the error of the modified two-flux approximation is estimated by comparison with the exact numerical calculations for the Henyey-Greenstein scattering function in a wide range of albedos and optical thicknesses. Possible applications of the derived analytical solution to identification problems are discussed.

Absorption↗

PubMed2006

Single-scale spectroscopy of structurally colored butterflies: measurements of quantified reflectance and transmittance.

Butterfly scales generally have very elaborate structures in submicrometer size, and some of them show distinctive optical effects through interaction with light. We describe two methods to quantitatively characterize the optical properties of the individual scales in those structurally colored butterflies. Owing to the small dimensions of the scale and to the fact that the reflection and transmission are very diffuse, it is generally difficult to accurately measure the reflectance and transmittance. To overcome these difficulties, we have carefully constructed an optical system including an integrating sphere and investigated variously colored nine kinds of scale. It is shown that the obtained spectra clearly characterize the optical differences among those structurally colored scales and also the differences between structural and pigmentary colors. Further, we have performed the angle-resolved measurement of the reflected light to characterize the spatial pattern of reflection, which is closely related to the mechanism of reflection.

Algorithms↗

PubMed2006

Optics of the average normal cornea from general and canonical representations of its surface topography.

Generally, the analysis of corneal topography involves fitting the raw data to a parametric geometric model that includes a regular basis surface, plus some sort of polynomial expansion to adjust the more irregular residual component. So far, these parametric models have been used in their canonical form, ignoring that the observation (keratometric) coordinate system is different from corneal axes of symmetry. Here we propose, instead, to use the canonical form when the topography is referenced to the intrinsic corneal system of coordinates, defined by its principal axes of symmetry. This idea is implemented using the general expression of an ellipsoid to fit the raw data given by the instrument. Then, the position and orientation of the three orthogonal semiaxes of the ellipsoid, which define the intrinsic Cartesian system of coordinates for normal corneas, can be identified by passing to the canonical form, by standard linear algebra. This model has been first validated experimentally obtaining significantly lower values for rms fitting error as compared with previous standard models: spherical, conical, and biconical. The fitting residual was then adjusted by a Zernike polynomial expansion. The topographies of 123 corneas were analyzed obtaining their radii of curvature, conic constants, Zernike coefficients, and the direction and position of the optical axis of the ellipsoid. The results were compared with those obtained using the standard models. The general ellipsoid model provides more negative values for the conic constants and lower apex radii (more prolate shapes) than the standard models applied to the same data. If the data are analyzed using standard models, the resulting mean shape of the cornea is consistent with previous studies, but when using the ellipsoid model we find new interesting features: The mean cornea is a more prolate ellipsoid (apical power 50 D), the direction of the optical axis is about 2.3 degrees nasal, and the residual term shows three Zernike coefficients significantly higher than zero (third-order trefoil and fourth- and sixth-order spherical). These three nonzero Zernike coefficients are responsible for most of the higher-order aberrations of the average cornea. Finally, we propose and implement a simple method for three-dimensional registration of corneal topographies, passing from the general to the canonical form of the ellipsoid.

Adult↗

PubMed2006

Multiresolution phase retrieval in the fresnel region by use of wavelet transform.

A multiresolution (multiscale) analysis based on wavelet transform is applied to the problem of optical phase retrieval from the intensity measured in the in-line geometry (lens-free). The transport-of-intensity equation and the Fresnel diffraction integral are approximated in terms of a wavelet basis. A solution to the phase retrieval problem can be efficiently found in both cases using the multiresolution concept. Due to the hierarchical nature of wavelet spaces, wavelets are well suited to multiresolution methods that contain multigrid algorithms. Appropriate wavelet bases for the best solution approximation are discussed. The proposed approach reduces the computational complexity and accelerates the convergence of the solution. It is robust and reliable, and successful on both simulated and experimental images obtained with hard x rays.

Algorithms↗

PubMed2006

Wavefront reconstruction from its gradients.

Wavefronts reconstructed from measured gradients are composed of a straightforward integration of the measured data, plus a correction term that disappears when there are no measurement errors. For regions of any shape, this term is a solution of Poisson's equation with Dirichlet conditions (V = 0 on the boundaries). We show that for rectangular regions, the correct solution is not a periodic one, but one expressed with Fourier cosine series. The correct solution has a lower variance than the periodic Fourier transform solution. Similar formulas exist for a circular region with obscuration. We present a near-optimal solution that is much faster than fast-Fourier-transform methods. By use of diagonal multigrid methods, a single iteration brings the correction term to within a standard deviation of 0.08, two iterations, to within 0.0064, etc.

Algorithms↗