Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “Programming, Linear”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,135 records · Page 63Linked to original sources

A system for toxicological screening by capillary gas chromatography with use of a drug retention index based on nitrogen-containing reference compounds.

Capillary gas chromatography with nitrogen-specific detection allows rapid screening of numerous drugs of toxicological interest. However, for accurate identification of individual peaks, the system must be well calibrated, e.g., through the use of retention indices (RI). To overcome problems associated with the use of RI's based on homologous series determined with nitrogen-specific detectors, we have developed an RI reference system based on molecular masses and retention times of nitrogen-containing compounds. The standards chosen are easily available in highly purified form and can be detected by the unmodified nitrogen-specific detector. By using temperature programming, we can obtain a linear relationship between the molecular masses of standards and their retention times. Used in conjunction with microcomputer data handling, this screening system is rugged and reliable, operating 22 h per day. In the past two years, we have screened greater than 3000 samples (blood, serum, urine, gastric lavage) without major problems.

Chromatography, Gas↗

[The fitting of various growth functions to the description of tree height growth].

Electronic computing renders possible new methods for determining parameters of functions of stochastic relations. PAUL (1975), for instance, published a FORTRAN-program for iterative non-linear regression for any function having an independent variable. Thus, optimum parameter values of a number of growth functions were determined on the basis of tree height development. Growth functions by RICHARDS (1959, according to v. BERTALANFFY 1941) and by SCHARF (1971) reach highest accuracy of fitting. If systems of growth curves are constructed, the elements of which differ by variation of a single parameter (e.g. height class fan), then the flexibility of multiparametric growth functions gets lost however.

Computers↗

Quality control of scintillation cameras using a minicomputer.

A minicomputer-based technique compiles objective indicators of scintigraphic system performance. The evaluation begins with the acquisition of a single image of an orthogonal hole pattern from which quantitative and regional measurements of point-source sensitivity, spatial resolution, and spatial linearity are derived. Two computer programs offer the user different but complementary features. The first program is the basis of an evaluation performed by a technologist for purposes of quality control. Operator intervention is minimal, and the entire protocol, including data acquisition and processing, can be completed in 20 min. The results are automatically compiled and displayed as graphs showing 100 consecutive sets of daily performance measurements. A second computer program is designed as an interactive diagnostic and research tool to display measurements as histograms and functional images. The operator can use the program to determine the quantitative and spatial characteristics of the system's intrinsic performance measurements made during the quality-control evaluations.

Computers↗

Hybrid expert-system approach to nurse scheduling.

The objective of this research was to develop a hybrid expert system entitled NURSE-HELP to achieve flexible and effective scheduling for nurses. NURSE-HELP was developed with the emphasis on following the ergonomics guidelines, which will improve the performance of nurses. Moreover, the combination of linear zero-one goal programming and an expert system program reduces the program run time while maintaining the quality of the schedule. The system was evaluated by comparing 18 sets of 4-week schedules generated by the head nurses manually and by NURSE-HELP. Concerning the amount of time required to generate the schedules, NURSE-HELP averaged less than 20 minutes, whereas head nurses spent from 2 to 4 hours. The quality of the schedules was measured using the following four criteria: 1) minimum staff level not satisfied, 2) day off request not granted, 3) backward rotation, and 4) maximum consecutive work periods on the night shift. NURSE-HELP was superior in all these aspects.

Ergonomics↗

Tricompartmental kinetics of the organophosphorous pesticide dimethoate.

We present a study on the distribution and persistence of the organophosphorous pesticide, dimethoate, in the Wistar rat. Dimethoate's levels in blood and tissues were determined using gas chromatography with a NPD detector. The toxicokinetic profile was estimated by non-linear regression using the software program PCNONLIN, which concluded that a tricompartmental model best described dimethoate's behavior in the rat body.

Adipose Tissue↗

[A new mathematical approach for determining antibiotic concentrations using the agar diffusion method].

A mathematical approach using the one-point intercept form of the equation of a straight line for the assay of antibiotic biological activity by the agar diffusion method is described. Insignificant alteration in the experimental conditions made it possible to markedly lower the volume of work and materials for the statistic processing. As distinct from the routine methods, the assay substance in three different concentrations is applied to three cavities on a dish and the standard substance in one control concentration is applied to the other three cavities on the same dish. The antibiotic biological activity is estimated from the equation lg cn = lg cst + (dn - dst)/bi when the relationship between the dose logarithm and the size of the diameters of the test microbe inhibition growth zones is direct. When the relationship is inverse e.g. when the dose is expressed as the dilution, the equation lg cn = lg cst + (dst - dn)/bi is used. Factor bi is determined experimentally for every sample by the mean value of the sizes of the inhibition growth zone diameter by the programs of the simple linear-regression.

Agar↗

Population pharmacokinetics of ibandronate in Caucasian and Japanese healthy males and postmenopausal females.

INTRODUCTION: Ibandronate is a potent, nitrogen-containing bisphosphonate that is licensed as a once-monthly oral preparation and is currently in clinical development as a novel intermittent intravenous (i.v.) injection in osteoporosis. Ibandronate pharmacokinetic (PK) data were used to develop a PK model that could ultimately be incorporated into a PK pharmacodynamic (PD) model to assist the ibandronate development program through computer-assisted trial design. This manuscript reports the use of non-linear mixed-effects modeling to characterize the PK of ibandronate, to examine the possible influence of ethnicity on the disposition of ibandronate and to develop an appropriate population PK model for ibandronate. METHODS: A retrospective, cross-study population PK analysis was performed using PK data from five phase I studies with i.v. ibandronate (0.125 - 2.0 mg) conducted in Caucasian and Japanese healthy male volunteers, postmenopausal Caucasian women without osteopenia and postmenopausal Japanese women with osteopenia. The following covariates were investigated to establish their influence on the central volume of distribution (V1) and drug clearance (CL): age, body weight, gender, disease status (healthy versus osteopenic), creatinine clearance (CLCR), and ethnicity (Japanese versus Caucasian). Serum concentrations of ibandronate were quantified by GC-MS or ELISA, and data were modeled using non-linear mixed-effects modeling implemented by the software program NONMEM. RESULTS: The PK of ibandronate was adequately described by a linear 3-compartment model. Disease status, body weight, gender and CLCR significantly influenced ibandronate CL (10 34%) and the latter 3 also influenced V1 (20 29%). Ethnicity was not a determinant for ibandronate PK in the final model. Although gender was the most influential covariate, differences in V1 and CL between the sexes were modest (29 and 34%, respectively) and the overall effects on ibandronate exposure (Cmax and AUC) were not clinically relevant. The final model described the observed PK of ibandronate well, and all PK parameters were estimated with an acceptable degree of precision (SE < 13%). CONCLUSION: The PK of i.v. ibandronate was well described by a linear 3-compartment population PK model that included disease status, body weight, gender and CLCR as covariates, but without greatly affecting ibandronate exposure (Cmax and AUC). Ethnicity did not influence ibandronate PK and was not included in the final model.

Adult↗

Recent developments in linear-space alignment methods: a survey.

A dynamic-programming strategy for sequence alignment first proposed in 1975 by Dan Hirschberg can be adapted to yield a number of extremely space-efficient algorithms. Specifically, these algorithms align two sequences using only "linear space," i.e., an amount of computer memory that is proportional to the sum of the lengths of the two sequences being aligned. This paper begins by reviewing the basic idea, as it applies to the global (i.e., end-to-end) alignment of two DNA or protein sequences. Three of our recent extensions of the technique are then outlined. The first extension computes an optimal alignment subject to the constraint that each position, i, of the first sequence must be aligned somewhere between positions L[i] and U[i] of the second sequence, for given values of L and U. The second finds all aligned position pairs (i.e., potential columns of the alignment) that occur in an alignment whose score exceeds a given threshold. The third treats the case where each of the two sequences is allowed to be an alignment (e.g., a sequence of aligned pairs), using a sensitive scoring scheme. We also describe two linear-space methods for computing k best local (i.e., involving only a part of each sequence) alignments, where k > or = 1. One is a linear-space version of the algorithm of Waterman and Eggert (1987), and the other is based on the strategy proposed by Wilbur and Lipman (1983). Finally, we describe programs that implement various combinations of these techniques to provide a multisequence alignment method that is especially suited to handling a few very long sequences. The utility of these programs is illustrated by analysis of the locus control region of the beta-like globin gene cluster of several mammals.

Algorithms↗

Analysis of reciprocal creatinine plots in renal failure.

The linearity that has frequently been observed when the reciprocal of the serum creatinine is plotted against time of follow-up has been used to predict the future course of patients with renal disease. In the present study, we have analyzed reciprocal creatinine plots with a computer program that identifies breakpoints in a linear plot and calculates the statistical significance of the fit provided by two intersecting lines instead of a single straight line. When applied to cases of chronic renal failure, the program revealed breakpoints that were not temporally related to recognized major clinical events. The computer program may prove useful for evaluating the validity of data derived from clinical trials of therapies to moderate the course of declining kidney function.

Adolescent↗

Software for the quantitative evaluation of in vitro monoclonal antibody production from ELISA data.

Software has been developed which permits the quantitation of monoclonal antibodies secreted by B cell hybridomas. This program does not require the user to enter a large number of complex parameters and can be easily used without any previous computer experience. It fits all the experimental and standard curves by determining overlapping linear domains using the linear least-squares method. The program is based on logarithmic interpolations for determining Ig concentrations comparing experimental samples to Ig concentrations in standards. It provides a complete print-out of the data with editing options and is written in BASIC EDEX 4.0 Commodore computer language. It permits the accurate quantification of minute amounts of monoclonal antibodies and can be used to detect the inhibitory or enhancing effects of lymphokines or cytokines on Ig secretion by hybridoma B cells.

Antibodies, Monoclonal↗

A Monte Carlo approach to calculate dose distribution around the lineal brachytherapy sources.

Monte Carlo means the statistical methods used to solve stochastic or deterministic physical or mathematical problems. The use of this technique for solving deterministic problems is indicated whenever there is no analytical solution for the problem or when this solution is very difficult or when the use of numerical methods requires an excessive amount of CPU-time. This paper describes the application of Monte Carlo methods using a computer program, called ISODOSE, which calculates isodose curves around linear radioactive sources to be used in brachytherapy treatment-planning. Brachytherapy is a special form of cancer treatment in which the radioactive source is placed near or inside the tumor, in order to produce cancer tissue necrosis. The program is written in C language, and the results will be compared to similar data obtained from a commercially available program at Hospital do Cancer de Recife (Brazil), radiation therapy institute. The use of Monte Carlo techniques in the ISODOSE program allows for plotting isodose curves around linear sources, and it is especially more precise near the borders of the source (singularities), taking less time than it would be possible by using deterministic methods. The ISODOSE program can be used for brachytherapy planning in small clinics in Recife and adjacent areas.

Algorithms↗

A microcomputer program for fitting two-substrate enzyme rate equations.

This paper describes a microcomputer program written in BASIC for fitting different two-substrate enzyme kinetic mechanisms. The present program is a complement of one which was recently published and was developed to fit different models of enzyme inhibition. The complete program resulting from this complementation allows the fitting of the most usual rate equations found in steady-state studies of enzyme kinetics. The program based on a non-linear least-squares regression, can be run on any microcomputer having the CP/M operating system. The initial rate equation for a steady-state random bisubstrate mechanism was chosen to evaluate the performance of the program, with contrived data of known error structure.

Computers↗

Introducing ONETEP: linear-scaling density functional simulations on parallel computers.

We present ONETEP (order-N electronic total energy package), a density functional program for parallel computers whose computational cost scales linearly with the number of atoms and the number of processors. ONETEP is based on our reformulation of the plane wave pseudopotential method which exploits the electronic localization that is inherent in systems with a nonvanishing band gap. We summarize the theoretical developments that enable the direct optimization of strictly localized quantities expressed in terms of a delocalized plane wave basis. These same localized quantities lead us to a physical way of dividing the computational effort among many processors to allow calculations to be performed efficiently on parallel supercomputers. We show with examples that ONETEP achieves excellent speedups with increasing numbers of processors and confirm that the time taken by ONETEP as a function of increasing number of atoms for a given number of processors is indeed linear. What distinguishes our approach is that the localization is achieved in a controlled and mathematically consistent manner so that ONETEP obtains the same accuracy as conventional cubic-scaling plane wave approaches and offers fast and stable convergence. We expect that calculations with ONETEP have the potential to provide quantitative theoretical predictions for problems involving thousands of atoms such as those often encountered in nanoscience and biophysics.

Journal Article↗

Use of nationwide outcomes monitoring data to compare clinical outcomes in specialized mental health programs and general psychiatric clinics in the Veterans Health Administration.

There has been a growing interest in the implementation of evidence-based specialized mental health programs. However, there has been little study of the effectiveness of these programs in comparison with standard mental health care in real world mental health systems. This study used a national sample of patients from the Veterans Health Administration to compare changes in mental health status in various specialized mental health outpatient programs and in general psychiatric clinics. Hierarchical linear models were used to compare the association of both regularity and intensity of care in six specialized mental health programs with GAF change scores in patients treated in general psychiatric clinics. While improvements were observed in all programs, two specialized programs performed better overall than general psychiatric care, one was not significantly different, and three had poorer outcomes than general psychiatric clinics. Programmatic differences in target populations accompanied by imperfect risk adjustment for population differences most likely explain why these results differ from those observed in clinical trials. While the analytic strategies demonstrated here may have wider applicability to comparative performance assessment, this study provides a cautionary tale concerning the limits of conclusions that can be drawn from large scale outcomes monitoring efforts.

Aged↗

[Mathematical model of radioactive colloid transport in the evaluation of the functional state of the reticuloendothelial system].

The authors assess the functional potentialities of a mathematical model of transport of labeled colloids in the body. Some additions to and modifications of the model were analyzed. They made it possible to get 4 diagnostically important indices: the rate of colloid excretion from the vascular bed, the rate phagocytosis, RES volume, and the rate of RP accumulation by the liver. Besides, the authors presented the results of a computerized experiment for the determination of maintenance characteristics of a program developed for computer. The iteration algorithm for parameter identification based on a method of linearization of minimized function, was used in the program. They also formulated recommendations for a choice of arbitrary components of a calculation procedure and the use of a method of barrier functions, developed as a result of prolonged maintenance of the program.

Algorithms↗

[National Research Program 1: participation in the base examination, analysis by means of a logit-linear model].

In each of four swiss cities participation to baseline screening for the prevention of cardio-vascular diseases is analyzed within a stratified random sample using a logit-linear model. Stratification was chosen along sex, age and time of residence for persons living alone, and mean age of parents, number of children and time of residence for persons living as a family.

Adolescent↗

Resonant bar simulations in media with localized damage.

As a rule, problems of wave propagation in finite media with non-uniform spatial distribution of material properties can only be tackled by numerical models. In addition, the modeling of damage features in a material requires the introduction of locally non-linear and--more important--non-unique equations of state. Using a multiscale approach, we have implemented a non-linear hysteretic stress-strain relation based on the Preisach-Mayergoyz (PM) model, into a numerical elastodynamic finite integration technique program, which has originally been developed for linearly elastic wave propagation in inhomogeneous media. The simulation results show qualitatively good agreement with data of non-linear resonant bar experiments in homogeneously non-linear and hysteretic media. When the PM density distribution of hysteretic units at the mesoscopic level is not uniform and/or confined to a finite area in stress-stress space, the response at high amplitude excitation tend to deviate from the quasi-analytical results obtained in the case of a uniform PM-space density. Localized microdamage features in an intact medium can be modeled by conceiving finite zones with pronounced hysteretic stress-strain relations within a "linear" surrounding. Forward calculations reveal a significant influence of the amplitude dependent resonance behavior on the location (edge versus center of a bar), the extend (width of the zone) and the degree (density of hysteretic units) of damage.

Journal Article↗

A set of programs for analysis of kinetic and equilibrium data.

A program package that can be used for analysis of a wide range of kinetic and equilibrium data is described. The four programs were written in Turbo Pascal and run on PC, XT, AT and compatibles. The first of the programs allows the user to fit data with 16 predefined and one user-defined function, using two different non-linear least-squares procedures. Two additional programs are used to test both the evaluation of model functions and the least-squares fits. One of these programs uses two simple procedures to generate a Gaussian-distributed random variable that is used to simulate the experimental error of measurements. The last program simulates kinetics described by differential equations that cannot be solved analytically, using numerical integration. This program helps the user to judge the validity of steady-state assumptions or treatment of kinetic measurements as relaxations.

Algorithms↗