Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “Transformer model”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,117 records · Page 62Linked to original sources
PubMed2005

Aerobic transformations in sewer systems: are they relevant?

In-sewer transformation processes affect wastewater quality. Especially during dwf the transformation processes can exert a significant influence on wastewater quality. The transformation rates under aerobic conditions were estimated from an oxygen mass balance over a sewer reach. Oxygen probes were installed at the upstream and downstream end of the sewer reach. Moreover, 14 wastewater samples, taken at the downstream end of the sewer reach, were used to measure the oxygen uptake rate and the water quality parameters COD(total), COD(dissolved) and ammonium. The results show that the rate of fluctuations in COD concentrations in sewer systems is an order of magnitude higher than the aerobic transformation rate. Consequently, it is concluded that the aerobic transformations in sewer systems are generally not relevant with respect to the influent fluctuations for Dutch wastewater systems. However, in situations with very long aerobic transport times, the aerobic conversions can be significant. An ASM1 based model concept for transformations in sewer systems was used to study the applicability of the model for Dutch sewer conditions. The difference between the measured and simulated values was rather low for the range of upstream dissolved oxygen and COD(total), COD(dissolved) and COD(suspended) levels. Therefore, it is concluded that the ASM1 based sewer model properly describes the changes in dissolved oxygen level in an aerobic sewer reach.

Aerobiosis↗
PubMedDate not supplied

Improved airway healing using transforming growth factor beta-3 in a rabbit model.

Laryngeal wound healing is essential following laryngotracheal surgery. Patients with poor wound healing develop poor epithelial closure and increased granulation tissue which cause a stenosis of the repaired airway. Transforming growth factor-beta3 has been shown to enhance wound healing in cutaneous wounds, but has never been used in the airway. This study utilized a rabbit laryngeal wound-healing model that has been shown to be reproducible with limited morbidity. Thirty-four rabbits underwent a cricoid-split operation with collagen sponge insertion. All animals were classified randomly into three groups: local administration of placebo (Group G1, n = 13), 0.18 microg transforming growth factor-beta3 (Group G2, n = 11) and of 1.0 microg transforming growth factor-beta3 (Group G3, n = 10). All animals survived the postoperative period without respiratory distress. The airway was harvested six days after surgery and assessed by light microscopy. Histologic evidence for healing was subjectively graded by two blinded, independent investigators, and the results were statistically analyzed for significance. A significant improvement in the epithelial closure (p < 0.01) and subepithelial connective tissue closure (p < 0.005) was found in the 1.0 microg transforming growth factor-beta3 group (G3) compared with the placebo group (G1). Analysis of the 0.18 microg transforming growth factor-beta3 group (G2) did not reveal any significant differences compared with the placebo group (G1). These results suggest an application for transforming growth factor-beta3 in accelerating wound healing in the larynx.

Animals↗
PubMed1993

Modelling of the passage of drugs into milk.

Pharmacokinetic modelling of plasma to milk transfer of drugs has assisted our understanding of the milk to plasma ratio (M/P) and pitfalls associated with it. The most useful way of measuring M/P ratios is, however, by model independent analysis. Physiological models have been proposed to enable the prediction of M/P ratios. The most accurate in prospective performance is the log-transformed phase distribution model. This model, developed by stepwise multiple linear regression analysis, also assists in the understanding of the relative contribution of the various physiological factors involved in the distribution of drugs into milk.

Animals↗
PubMed1998

Trichloroethylene biodegradation by phenoloxidizing cultures grown from various conditions.

The rate and extent of trichloroethylene (TCE) degradation by three cultures of phenol oxidizing bacteria grown from two chemostats and one from rotating biological contactors was investigated. Batch experiments were performed to measure the disappearance of TCE both with the resting cell alone and with the formate added. Experimental data were then compared with mathematical predictions from a model describing TCE transformation. Through nonlinear regression analysis, a best fit between the measurements and predictions was achieved when residual sum of squares reached a minimum. Based on the resultant parameters of transformation capacity and reaction rate, the suspended cells with a mean cell retention time (MCRT) of 3.8 days were the most active in degrading TCE, while the attached bacteria had the least activity. Based on the results presented herein, it is recommend that using suspended-growth reactors operated at short MCRT to produce desirable cells for cometablic transformation of TCE.

Bacteria↗
PubMed2000

A model of EMG generation.

Simulation models are unavoidable in experimental research when the point is to develop new processing algorithms to be applied on real signals in order to extract specific parameter values. Such algorithms have generally to be optimized by comparing true parameter values to those deduced from the algorithm. Only a simulation model can allow the user to access and control the actual process parameter values. This constraint is especially true when dealing with biomedical signals like surface electromyogram (SEMG). This work is an attempt to produce an efficient SEMG simulation model as a help for assessing algorithms related to SEMG features description. It takes into account the most important parameters which could influence these characteristics. This model includes all transformations from intracellular potential to surface recordings as well as a fast implementation of the extracellular potential computation. In addition, this model allows multiple graphically-programmable electrode-set configurations and SEMG simulation in both voluntary and elicited contractions.

Action Potentials↗
PubMed2005

Expression of a major house dust mite allergen gene from Dermatophagoides farinae in Lotus japonicus accession Miyakojima MG-20.

Transformation of a model legume Lotus japonicus accession Miyakojima MG-20 was examined using Agrobacterium tumefaciens with a binary expression vector. Using the improved transformation method, we introduced a major allergen gene from a house dust mite, Der f 1, into MG-20. Analyses by Southern hybridization, reverse transcription (RT)-PCR, and Western blotting showed that the Der f 1 gene was integrated into the genome of L. japonicus, expressing the gene product in the T1 lines. Our results imply future application of oral allergen-specific immunotherapy using legume plants.

Antigens, Dermatophagoides↗
PubMed2006

An integrated anaerobic/aerobic bioprocess for the remediation of chlorinated phenol-contaminated soil and groundwater.

An investigation of biodegradation of chlorinated phenol in an anaerobic/aerobic bioprocess environment was made. The reactor configuration used consisted of linked anaerobic and aerobic reactors, which served as a model for a proposed bioremediation strategy. The proposed strategy was studied in two reactors before linkage. In the anaerobic compartment, the transformation of the model contaminant, 2,4,6-trichlorophenol (2,4,6-TCP), to lesser-chlorinated metabolites was shown to occur during reductive dechlorination under sulfate-reducing conditions. The consortium was also shown to desorb and mobilize 2,4,6-TCP in soils. This was followed, in the aerobic compartment, by biodegradation of the pollutant and metabolites, 2,4-dichlorophenol, 4-chlorophenol, and phenol, by immobilized white-rot fungi. The integrated process achieved elimination of the compound by more than 99% through fungal degradation of metabolites produced in the dechlorination stage. pH correction to the anaerobic reactor was found to be necessary because acidic effluent from the fungal reactor inhibited sulfate reduction and dechlorination.

Bacteria, Aerobic↗
PubMedDate not supplied

[Radiation-induced, irreparable, hereditary changes in cells promoting their neoplastic transformation].

In experiments with model plant tumors (Kalanchoe-ti plasmid Agrobact. tumefaciens C-58D) it was shown that exposure of the recipient plant to low-level gamma-radiation of 2 Gy induced changes in cells that were not repaired over two months promoting tumoral transformations in them. Those changes were shown to persist in the offspring of the exposed somatic cells.

Cell Transformation, Neoplastic↗
PubMed1997

Uncoordinated regulation of mRNA expression of the three isoforms of transforming growth factor-beta in the mouse skin carcinogenesis model.

The mRNA expression and autoregulation of expression of the three isoforms of transforming growth factor-beta (TGFbeta) were examined in the mouse skin carcinogenesis model by northern analyses. We found that TGFbeta3 mRNA levels followed a pattern similar to those of TGFbeta1 during carcinogenesis: the levels were somewhat low in normal skin but became highly overexpressed in late-stage papillomas and squamous cell carcinomas (15- to 20-fold higher than in normal skin). On the other hand, the TGFbeta2 mRNA levels remained relatively low in all benign and malignant tumors, even though the levels were higher than the nearly undetectable levels in normal skin. In a squamous cell carcinoma cell line (CH72), stable transfection and expression of a mutated simian TGFbeta1 cDNA producing bioactive TGFbeta1 significantly downregulated (mean greater than ten-fold) TGFbeta2 mRNA levels and modestly downregulated (about twofold) murine TGFbeta1 expression but had no effect on TGFbeta3 mRNA. In contrast, treatment of all CH72 clones with exogenous TGFbeta1, TGFbeta2, or TGFbeta3 either had no effect or slightly downregulated TGFbeta1 mRNA, upregulated TGFbeta2 mRNA expression an average of twofold to threefold, and strongly upregulated (mean 13- to 27-fold) TGFbeta3 mRNA levels. TGFbeta treatment of primary cultures of mouse skin keratinocytes upregulated all three TGFbeta mRNA levels slightly to moderately (1.3- to 5-fold). Thus, although TGFbeta1 and TGFbeta3 mRNA expressions were apparently coordinately upregulated during mouse skin carcinogenesis, the three TGFbeta mRNAs were differentially regulated by stable transfection of active TGFbeta1 versus exogenous TGFbeta treatment in CH72 cells and by TGFbeta treatments of normal keratinocytes versus carcinoma CH72 cells.

Animals↗
PubMed2005

Stem and progenitor-like cells contribute to the aggressive behavior of human epithelial ovarian cancer.

The cellular mechanisms underlying the increasing aggressiveness associated with ovarian cancer progression are poorly understood. Coupled with a lack of identification of specific markers that could aid early diagnoses, the disease becomes a major cause of cancer-related mortality in women. Here we present direct evidence that the aggressiveness of human ovarian cancer may be a result of transformation and dysfunction of stem cells in the ovary. A single tumorigenic clone was isolated among a mixed population of cells derived from the ascites of a patient with advanced ovarian cancer. During the course of the study, yet another clone underwent spontaneous transformation in culture, providing a model of disease progression. Both the transformed clones possess stem cell-like characteristics and differentiate to grow in an anchorage-independent manner in vitro as spheroids, although further maturation and tissue-specific differentiation was arrested. Significantly, tumors established from these clones in animal models are similar to those in the human disease in their histopathology and cell architecture. Furthermore, the tumorigenic clones, even on serial transplantation continue to establish tumors, thereby confirming their identity as tumor stem cells. These findings suggest that: (a) stem cell transformation can be the underlying cause of ovarian cancer and (b) continuing stochastic events of stem and progenitor cell transformation define the increasing aggression that is characteristically associated with the disease.

Clone Cells↗
PubMed2005

Proteomics analysis of H-RAS-mediated oncogenic transformation in a genetically defined human ovarian cancer model.

RAS is a small GTP binding protein mutated in approximately 30% human cancer. Despite its important role in the initiation and progression of human cancer, the underlying mechanism of RAS-induced human epithelial transformation remains elusive. In this study, we probe the cellular and molecular mechanisms of RAS-mediated transformation, by profiling two human ovarian epithelial cell lines. One cell line was immortalized with SV40 T/t antigens and the human catalytic subunit of telomerase (T29), while the second cell line was transformed with an additional oncogenic ras(V12) allele (T29H). In total, 32 proteins associated with RAS-mediated transformation have been identified using peptide mass fingerprinting. These protein targets are involved in several cellular pathways, including metabolism, redox balance, calcium signaling, apoptosis, and cellular methylation. One such target, the 40 kDa procaspase 4 is significantly upregulated at the protein level in RAS-transformed T29H cells, related directly to signaling through MEK, but not PI3 kinase. Cellular caspase 4 activity is, however, suppressed in the T29H cells, suggesting that the maturation process of caspase 4 is abrogated in RAS-transformed T29H cells. Consistent with this notion, transformed T29H cells were less susceptible to the toxic effects of anti-Fas antibody than were immortalized, nontransformed T29 cells, associated with less activation of caspase 4. This study demonstrates that functional proteomic analysis of a genetically defined cancer model provides a powerful approach toward systematically identifying cellular targets associated with oncogenic transformation.

Apoptosis↗
PubMed2004

Emergence of orientation-selective inhibition in the primary visual cortex: a Bayes-Markov computational model.

The recent consensus is that virtually all aspects of response selectivity exhibited by the primary visual cortex are either created or sharpened by cortical inhibitory interneurons. Experimental studies have shown that there are cortical inhibitory cells that are driven by geniculate cells and that, like their cortical excitatory counterparts, are orientation selective, though less sharply tuned. The main goal of this article is to demonstrate how orientation-selective inhibition might be created by the circuitry of the primary visual cortex (striate cortex, V1) from its nonoriented geniculate inputs. To fulfill this goal, first, a Bayes-Markov computational model is developed for the V1 area dedicated to foveal vision. The developed model consists of three parts: (i) a two-layered hierarchical Markov random field that is assumed to generate the activity patterns of the geniculate and cortical inhibitory cells, (ii) a Bayesian computational goal that is formulated based on the maximum a posteriori (MAP) estimation principle, and (iii) an iterative, deterministic, parallel algorithm that leads the cortical circuitry to achieve its assigned computational goal. The developed model is not fully LGN driven and it is not implementable by the neural machinery of V1. The model, then, is transformed into a fully LGN-driven and physiologically plausible form. Computer simulation is used to demonstrate the performance of the developed models.

Action Potentials↗
PubMed2006

Accuracy and performance of three water quality models for simulating nitrate nitrogen losses under corn.

Simulation models can be used to predict N dynamics in a soil-water-plant system. The simulation accuracy and performance of three models: LEACHM (Leaching Estimation And CHemistry Model), NCSWAP (Nitrogen and Carbon cycling in Soil, Water And Plant), and SOILN to predict NO3-N leaching were evaluated and compared to field data from a 5-yr experiment conducted on a Hagerstown silt loam (fine, mixed, mesic Typic Hapludalf). Nitrate N losses past 1.2 m from N-fertilized and manured corn (Zea mays L.) were measured with zero-tension pan lysimeters for 5 yr. The models were calibrated using 1989-1990 data and validated using 1988-1989, 1990-1991, 1991-1992, and 1992-1993 NO3-N leaching data. Statistical analyses indicated that LEACHM, NCSWAP, and SOILN models were able to provide accurate simulations of annual NO3-N leaching losses below the 1.2-m depth for 8, 9, and 7 of 10 cases, respectively, in the validation years. The inaccuracy in the models' annual simulations for the control and manure treatments seems to be related to inadequate description of processes of N and C transformations in the models' code. The overall performance and accuracy of the SOILN model were worse than those of LEACHM and NCSWAP. The root mean square error (RMSE) and modeling efficiency (ME) were 10.7 and 0.9, 9.5 and 0.93, and 20.7 and 0.63 for LEACHM, NCSWAP, and SOILN, respectively. Overall, the three models have the potential to predict NO3-N losses below 1.2-m depth from fertilizer and manure nitrogen applied to corn without recalibration of models from year to year.

Environmental Monitoring↗
PubMed1990

Phenotypic expression in spontaneously transformed cultured rat liver epithelial cells.

Five clonal cell strains of an early-passage normal rat liver epithelial cell line were transformed spontaneously using the protocol of "selective culture" condition. Twelve cell lines were established from the tumors produced after injecting these transformed cells into 1-day-old syngeneic rats. The phenotypic expressions of these spontaneously transformed tumor cell lines were studied and compared to those of cell lines obtained from tumors produced by rat liver epithelial cells transformed by N-methyl-N'-nitro-N-nitrosoguanidine. Like the chemically induced tumor cells, spontaneously transformed tumor cells exhibited phenotypic heterogeneity in the expression of isoenzymes, proto-oncogenes, growth factors and their receptors, and cellular responses to the effect of growth factors. However, unlike the chemically induced tumor cells, these spontaneously induced tumor cells did not express the "resistant phenotypes" characteristic of chemically induced or promoted tumors. Although all the spontaneously induced tumor cell lines expressed variable amounts of transforming growth factor-alpha mRNA, it was not functionally coordinated with the expression of its receptor, the epidermal growth factor receptor. Thus, spontaneously transformed rat liver epithelial cells demonstrate both similarity and diversity in their phenotypic expression when compared to their chemically induced counterpart. This model of spontaneous transformation of cultured rat liver epithelial cells may be useful for the mechanistic study of non-chemically induced carcinogenesis.

Animals↗
PubMed2006

A Fourier transform infrared microspectroscopic imaging investigation into an animal model exhibiting glioblastoma multiforme.

Glioblastoma multiforme (GBM) is a highly malignant human brain tumour for which no cure is available at present. Numerous clinical studies as well as animal experiments are under way with the goal being to understand tumour biology and develop potential therapeutic approaches. C6 cell glioma in the adult rat is a frequently used and well accepted animal model for the malignant human glial tumour. By combining standard analytical methods such as histology and immunohistochemistry with Fourier Transform Infrared (FTIR) microspectroscopic imaging and multivariate statistical approaches, we are developing a novel approach to tumour diagnosis which allows us to obtain information about the structure and composition of tumour tissues that could not be obtained easily with either method alone. We have used a "Stingray" FTIR imaging spectrometer to analyse and compare the compositions of coronal brain tissue sections of a tumour-bearing animal and those from a healthy animal. We have found that the tumour tissue has a characteristic chemical signature, which distinguishes it from tumour-free brain tissue. The physical-chemical differences, determined by image and spectral comparison are consistent with changes in total protein absorbance, phosphodiester absorbance and physical dispersive artefacts. The results indicate that FTIR imaging analysis could become a valuable analytic method in brain tumour research and possibly in the diagnosis of human brain tumours.

Animals↗
PubMed2003

When does action resist visual illusions? Effector position modulates illusory influences on motor responses.

Actors viewed horizontal segments either in isolation or embedded in patterns that produce spatial illusory effects (Kanizsa's compression illusion and the "dumbbell" version of the Müller-Lyer compression-expansion illusion). They were asked to reproduce the apparent horizontal extent of these segments by the amplitude of open- or closed-loop motor responses (after having positioned a finger on position A, choose a position B on the right of A such that apparent width = B-A). A touchmonitor was used to present the displays and to record movement amplitudes and times. In open-loop motor responses, displays were turned off as soon as actors raised their finger from position A. In closed-loop responses, displays could be viewed continuously during the actions. Four conditions were investigated: (1). open-loop responses starting from A at the right endpoint of the segment; (2). closed-loop responses from A at the right endpoint of the segment; (3). open-loop responses from A at the left endpoint of the segment; and (4). open-loop responses from A aligned horizontally with the left endpoint of the segment but displaced vertically below that segment. With both kinds of display, results in conditions (1). and (2). demonstrated illusory effects comparable to those measured in standard visual matching experiments, whereas results in conditions (3). and (4). showed essentially no illusory effects. Implications for models of visuomotor transformations in peripersonal space are discussed.

Adult↗
PubMed1992

Visuomotor transformations underlying arm movements toward visual targets: a neural network model of cerebral cortical operations.

We propose a biologically realistic neural network that computes coordinate transformations for the command of arm reaching movements in 3-D space. This model is consistent with anatomical and physiological data on the cortical areas involved in the command of these movements. Studies of the neuronal activity in the motor (Georgopoulos et al., 1986; Schwartz et al., 1988; Caminiti et al., 1990a) and premotor (Caminiti et al., 1990b, 1991) cortices of behaving monkeys have shown that the activity of individual arm-related neurons is broadly tuned around a preferred direction of movements in 3-D space. Recent data demonstrate that in both frontal areas (Caminiti et al., 1990a,b, 1991) these cell preferred directions rotate with the initial position of the arm. Furthermore, the rotation of the population of preferred directions precisely corresponds to the rotation of the arm in space. The neural network model computes the motor command by combining the visual information about movement trajectory with the kinesthetic information concerning the orientation of the arm in space. The appropriate combination, learned by the network from spontaneous movement, can be approximated by a bilinear operation that can be interpreted as a projection of the visual information on a reference frame that rotates with the arm. This bilinear combination implies that neural circuits converging on a single neuron in the motor and premotor cortices can learn and generalize the appropriate command in a 2-D subspace but not in the whole 3-D space. However, the uniform distribution of cell preferred directions in these frontal areas can explain the computation of the correct solution by a population of cortical neurons. The model is consistent with the existing neurophysiological data and predicts how visual and somatic information can be combined in the different processing steps of the visuomotor transformation subserving visual reaching.

Animals↗
PubMed1995

Transforms of the computerized patient record data model: from transactions to analytical processing.

The design of Computerized Patient Record databases needs to be different depending on whether the focus of the database is transaction processing or analytical processing. Transaction processing includes the operational use of databases for single patient update during clinical encounters. Analytical processing includes cross-patient querying for research or clinical management. These different design needs are defined. A case study is presented for the methodology that transforms transaction databases to analytical ones. The resulting analytical design is argued to be successfully evaluated according to specific criteria of useability and maintainability. This methodology is easily replicated in any relational database environment.

Computer Systems↗