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Protein dynamics studied by neutron scattering.

This review of protein dynamics studied by neutron scattering focuses on data collected in the last 10 years. After an introduction to thermal neutron scattering and instrumental aspects, theoretical models that have been used to interpret the data are presented and discussed. Experiments are described according to sample type, protein powders, solutions and membranes. Neutron-scattering results are compared to those obtained from other techniques. The biological relevance of the experimental results is discussed. The major conclusion of the last decade concerns the strong dependence of internal dynamics on the macromolecular environment.

Bacteriorhodopsins↗

Insertion of externally administered amyloid beta peptide 25-35 and perturbation of lipid bilayers.

To understand the molecular basis and to prevent diseases such as Alzheimer's disease (AD), the targets of the triggering agent have to be elucidated. beta-Amyloid peptide (Abeta) is the major component of extracellular senile plaques characteristic of AD. For a very long time, the aggregated form of the Abeta was supposed to be responsible for the neurodegeneration that occurs in AD. Recently, the attention has been diverted to the monomeric or oligomeric forms of Abeta and their interaction with cellular targets. In our investigation, the physiological and medically important insertion of externally applied Abeta monomers into the bilayer of lipid vesicles is demonstrated. Abeta(25-35) has been localized in the region of the lipid alkyl chain, and it has a severe disordering effect on the lamellar order of the lipid bilayer. Both of these results are of biomedical relevance.

Amino Acid Sequence↗

Cholesterol hydroxyl group is found to reside in the center of a polyunsaturated lipid membrane.

Cholesterol and saturated lipid species preferentially partition into liquid ordered microdomains, such as lipid rafts, away from unsaturated lipid species for which the sterol has less affinity in the surrounding liquid-disordered membrane. To observe how cholesterol interacts with unsaturated phospholipids, we have determined, from one-dimensional neutron scattering length density profiles, the depth of cholesterol in phosphatidylcholine (PC) bilayers with varying amounts of acyl chain unsaturation. Through the use of [2,2,3,4,4,6-(2)H(6)]-labeled cholesterol, we show that in 1-palmitoyl-2-oleoylphosphatidylcholine (16:0-18:1 PC), 1,2-dioleoylphosphatidylcholine (18:1-18:1 PC), and 1-stearoyl-2-arachidonylphosphatidylcholine (18:0-20:4 PC) bilayers the center of mass of the deuterated sites is approximately 16 A from the bilayer center. This location places the hydroxyl group of the sterol moiety at the hydrophobic/hydrophilic bilayer interface, which is the generally accepted position. In dramatic contrast, for 20:4-20:4 PC membranes the hydroxyl group is found, unequivocally, sequestered in the bilayer center. We attribute the change in location to the high disorder of polyunsaturated fatty acids (PUFA) that is incompatible with close proximity to the steroid moiety in its usual "upright" orientation.

Acylation↗

Glycerol derivatives of cutin and suberin monomers: synthesis and self-assembly.

Glycerol derivatives of cutin and suberin monomers were synthesized by acid catalysis. Their dispersion in an aqueous solution was examined by phase contrast microscopy, neutron scattering, and solid state NMR. It is shown that the phase behavior strongly depends on the nature of the derivatives forming either lumps of aggregated membranes or well dispersed membranes.

Glycerol↗

Understanding the mechanism of action of poly(amidoamine)s as endosomolytic polymers: correlation of physicochemical and biological properties.

Bioresponsive poly(amidoamine)s (PAA)s are currently under development as endosomolytic polymers for intracellular delivery of proteins and genes. Here for the first time, small-angle neutron scattering (SANS) is used to systematically investigate the pH-dependent conformational change of an endosomolytic polymer, the PAA ISA 23. The radius of gyration of the ISA23 was determined as a function of pH and counterion, the aim being to correlate changes in polymer conformation with membrane activity assessed using a rat red blood cell haemolysis assay. With decreasing pH, the ISA23 radius of gyration increased to a maximum (R(g) approximately 80 A) around pH = 3, before subsequently decreasing once more. At high pH and therefore high ionic strengths, the polymer is negatively charged and adopts a rather compact structure (R(g) approximately 20 A), presumably with the dissociated carboxylic groups on the exterior of the polymer coil. At low pH, the coil again collapses (R(g) < 20 A), presumably due to the effects of the high ionic strength. It is concluded that the nature of the salt form has no direct bearing on the size of the polymer coil, but it does indirectly determine the prevailing pH and, hence, polymer conformation. Pulsed-gradient spin-echo NMR measurements were in good agreement with the SANS estimates of the radius of gyration, although ISA23 polydispersity does complicate the data interpretation/comparison. These results support the proposed mode of action of PAAs, namely a coil expansion on passing from a neutral pH (extracellular) to an acidic pH (endosomal and lysosomal) environments. The results do, however, suggest that the charge on the polymer shows a closer correlation with the haemolysis activity rather than the polymer conformation.

Animals↗

Rheological and structural properties of aqueous alginate during gelation via the Ugi multicomponent condensation reaction.

Turbidity, structure, and rheological features during gelation via the Ugi multicomponent condensation reaction of semidilute solutions of alginate have been investigated at different polymer and cross-linker concentrations and reaction temperatures. The gelation time of the system decreased with increasing polymer and cross-linker concentrations, and a temperature rise resulted in a faster gelation. At the gel point, a power law frequency dependence of the dynamic storage modulus (G' proportional, variant omega(n)(')) and loss modulus (G' ' proportional, variant omega(n)(' ')) was observed for all gelling systems with n' = n' ' = n. By varying the cross-linker density at a fixed polymer concentration (2.2 wt %), the power law exponent is consistent with that predicted (0.7) from the percolation model. The value of n decreases with increasing polymer concentration, whereas higher temperatures give rise to higher values of n. The elastic properties of the gels continue to grow over a long time in the postgel region, and at later stages in the gelation process, a solidlike response is observed. The turbidity of the gelling system increases as the gel evolves, and this effect is more pronounced at higher cross-linker concentration. The small-angle neutron scattering results reveal large-scale inhomogeneities of the gels, and this effect is enhanced as the cross-linker density increases. The structural, turbidity, and rheological features were found to change over an extended time after the formation of the incipient gel. It was demonstrated that temperature, polymer, and cross-linker concentrations could be utilized to tune the physical properties of the Ugi gels such as structure, transparency, and viscoelasticity.

Alginates↗

Rheological and structural characterization of the interactions between cyclodextrin compounds and hydrophobically modified alginate.

Interactions in semidilute solutions of a hydrophobically modified alginate (HM-alginate) in the presence of hydroxypropyl-beta-cyclodextrin (HP-beta-CD) monomer or a beta-cyclodextrin polymer (poly(beta-CD)) have been characterized at different temperatures with the aid of rheology and small-angle neutron scattering (SANS). The viscosity results for the HM-alginate/HP-beta-CD system reveal progressive deactivation of the hydrophobic associations as the concentration of HP-beta-CD increases. For the HM-alginate/poly(beta-CD) system, on the other hand, addition of poly(beta-CD) sets up bridges between adjacent polymer chains and thereby strengthens the associative network. A novel shear-thickening effect is observed at fairly high shear rates for the HM-alginate/poly(beta-CD) system, and this feature is influenced by temperature. Elevated temperature induces higher chain mobility and the formation of weaker network associations. Analyses of the SANS data disclosed that the association strength in HM-alginate/poly(beta-CD) mixtures increases strongly with increasing cosolute concentration, whereas no effect or a moderate weakening of the strength can be traced in HM-alginate/HP-beta-CD solutions upon addition of HP-beta-CD. The value of the correlation length xi is virtually not affected by the addition of cosolute for the HM-alginate/poly(beta-CD) system, whereas the decoupling of hydrophobic moieties of the polymer upon addition of HP-beta-CD gives rise to a smaller value of xi, suggesting that the size of the heterogeneity patches is reduced. The SANS results suggest that compact association structures are formed in the HM-alginate/poly(beta-CD) solutions.

Alginates↗

Effect of metal-ligand bond lengths on superexchange interactions in Jahn-Teller d(4) ion systems: spin dimer analysis of the magnetic structure of marokite CaMn(2)O(4).

In marokite CaMn(2)O(4), all six Mn-O bonds of each MnO(6) octahedron are different because of the Jahn-Teller distortion so that every Mn(3+) (d(4)) ion has six different superexchange interactions with its neighboring Mn(3+) ions. The spin exchange interactions of CaMn(2)O(4) were examined on the basis of spin dimer analysis to find what geometrical parameters of the Mn-O-Mn superexchange paths control the signs and strengths of their spin exchange interactions. Our work correctly describes the magnetic structure of CaMn(2)O(4) observed from neutron powder diffraction measurements and shows that the antiferromagnetic interactions of the Mn-O-Mn paths depend primarily on the asymmetry and the Mn-O bond length of the Mn-O-Mn bridge, but not on the 90 degree angle Mn-O-Mn bond angle.

Journal Article↗

New alkaline earth aluminum hydride with one-dimensional zigzag chains of [AlH6]: synthesis and crystal structure of BaAlH5.

The title hydride and its deuteride were successfully synthesized. The crystal structure of the deuteride was determined by time-of-flight neutron powder diffraction. BaAlD(5) crystallizes with a new orthorhombic structure in space group Pna2(1) (No. 33), cell parameters a = 9.194(1) A, b = 7.0403(9) A, and c = 5.1061(6) A, Z = 4. BaAlH(5) is the first example that contains one-dimensional zigzag chains of [AlH(6)] along the crystallographic c axis.

Journal Article↗

Two-dimensional metallic chain compounds Y5M2Te2 (M = Fe, Co, Ni) that are related to Gd3MnI3. The hydride derivative Y5Ni2Te2D0.4.

Y(5)M(2)Te(2) (M = Fe, Co, Ni) have been prepared by high-temperature solid-state techniques and shown to be isostructural and orthorhombic Cmcm (No. 63), Z = 4. The structure was established by single crystal X-ray methods at 23 degrees C for M = Fe, with a = 3.9594(3) A, b = 15.057(1) A, and c = 15.216(1) A. The new structure contains zigzag chains of the late transition metal sheathed by a column of yttrium atoms that are in turn condensed through trans vertices on the latter to yield 2D bimetallic layers separated by single layers of tellurium atoms. Reaction of hydrogen with Y(5)Ni(2)Te(2) causes a rumpling of the Y-Ni layers as determined by both single X-ray crystal means at 23 degrees C and neutron powder diffraction at -259 degrees C for Y(5)Ni(2)Te(2)D(0.41(1)), Pnma (No. 62), Z = 4. Lattice constants from the former study are a = 14.3678(7) A, b = 4.0173(2) A, and c = 15.8787(7) A. The hydrogen is accommodated in tetrahedral yttrium cavities generated by bending the formerly flat sheets at the trans Y vertices. A higher hydride version also exists. Band structure calculations confirm the 2D metal-bonded character of the compounds and also help illustrate the bonding/matrix changes that accompany the bonding of hydrogen. The ternary structures for both Y(5)M(2)Te(2) and Sc(5)Ni(2)Te(2) can be derived from that of Gd(3)MnI(3), the group illustrating three different kinds of metal chain condensation.

Journal Article↗

Metal-metal bonding in ScTaN2. A new compound in the system ScN-TaN.

Gray microcrystalline powders of ScTaN(2) were prepared from solid-state reactions of delta-ScN with Ta(3)N(5) powders at T = 1770 K. According to thermal analyses the compound is stable against oxidation by O(2) up to temperatures of T = 800 K. In an Ar atmosphere ScTaN(2) decomposes above T = 1250 K and in a N(2) atmosphere above T = 2000 K under release of N(2) to form delta-ScN and beta-Ta(2)N. The crystal structure (space group P6(3)/mmc, No. 194, a = 305.34(3) pm, c = 1056.85(9) pm, Z = 2) was refined on the basis of X-ray and neutron powder diffraction data. It comprises alternating layers of ScN(6/3) octahedra and trigonal TaN(6/3) prisms, which are also observed in the binary nitrides delta-ScN and theta-TaN, respectively. A small degree of anti-site defects (about 5%) was detected. Only a small solubility of ScN in epsilon-TaN was observed, while the solubility of TaN in delta-ScN is >/=10 mol % at T = 1820 K. ScTaN(2) is a diamagnetic small gap semiconductor or a semimetal, as inferred from magnetization and electrical resistivity measurements, consistent with band structure calculations. Chemical bonding analyses with the COHP method yield significant covalent Ta-Ta interactions. Topological analyses of the electron localization function reveal unexpected Ta-Ta three-center bonding basins within seemingly empty trigonal prisms of the TaN(6/3) layers.

Journal Article↗

Anion ordering and defect structure in Ruddlesden-Popper strontium niobium oxynitrides.

The crystal structure of the n = 1 member of the Ruddlesden-Popper family (SrO)(SrNbO(2)N)(n) was refined by the Rietveld method using neutron powder diffraction data. This complex crystallizes in the I4/mmm space group with cell parameters a = 4.0506(2) and c = 12.5936(9) angstroms. The refined composition was Sr(2)NbO(3.28)N(0.72), which corresponds to a formal oxidation state for Nb of +4.72, meaning 72% Nb(V) and 28% Nb(IV). The nitrogen atoms order in the equatorial sites of the niobium octahedra according to Pauling's second crystal rule as the more charged anion occupies the site showing the larger bond strength sums. Pauling's second crystal rule is shown to be able to predict the distribution of anions in the available crystallographic sites in other mixed anion systems such as oxyhalides with K(2)NiF(4) structures and other oxynitrides. The defect structure of the n = 1 and n = 2 members of the same family was investigated by high-resolution electron microscopy. Recurrent intergrowth along the c axis with other Ruddlesden-Popper members (n = 3, 4, and perovskite) is observed, resulting in streaking along this direction in the corresponding electron diffraction patterns.

Journal Article↗

Synthesis and crystal structure of lithium beryllium deuteride Li2BeD4.

Single-phase ternary deuteride Li(2)BeD(4) was synthesized by a high-pressure high-temperature technique from LiD and BeD(2). The crystal structure of Li(2)BeD(4) was solved from X-ray and neutron powder diffraction data. The compound crystallizes in the monoclinic space group P2(1)/c with lattice parameters a = 7.06228(9) A, b = 8.3378(1) A, c = 8.3465(1) A, beta =93.577(1) degrees, and Z = 8. Its structure contains isolated BeD(4) tetrahedra and Li atoms that are located in the structure interstices. Li(2)BeD(4) does not undergo any structural phase transitions at temperatures down to 8 K.

Beryllium↗

Synthesis and structure of the bilayer hydrate Na0.3NiO2.1.3D2O.

The metal oxide bilayer deuterate (hydrate) Na(0.3)NiO2.1.3D2O (Na(0.3)NiO2.1.3H2O) were prepared from NaxNiO2 by extracting Na+ cations and simultaneously intercalating fully and nondeuterated water. High-resolution neutron powder diffraction, thermogravimetric analysis, and inductively coupled plasma atomic emission spectroscopy were used to show that a Na(0.3)(D2O)(1.3) network separates layers of edge-sharing NiO6 octahedra.

Journal Article↗

Magnetic structure and magnetic properties of synthetic lindgrenite, Cu3(OH)2(MoO4)2.

Synthetic Cu3(OH)2(MoO4)2 consists of Cu3(OH)2 brucite ribbons of edge-sharing copper octahedra connected by MoO4 into a 3D network as in the mineral, lindgrenite, for all temperatures between 1.5 and 300 K. Each ribbon consists of a triangular connection between two different types of copper atom (Cu(1) and 2 Cu(2)) via mu3-OH. The MoO4 acts both as one- and three-atom bridges to connect six Cu atoms belonging to three adjacent ribbons. The magnetic properties are consistent with those of ferrimagnetic chains, and the resulting moment of each chain is parallel below the long-range magnetic ordering at 13 K. The Curie constant is 0.468(1) emu K mol-1 of Cu; the Weiss temperature is -14.2(2) K, and the saturation magnetization at 2 K in 50 kOe is 0.41 N muB mol-1 of Cu. Analyses of the neutron powder diffraction reveal an ordered magnetic state where the moment of Cu(1) is antiparallel to those of the two Cu(2); all of them point along the a axis without any sign of geometrical frustration. Any degeneracy that may be present because of the triangular topology of the Cu atoms (s = 1/2) appears to be lifted by the distortion from an ideal equilateral geometry of the triangle. The entropy, estimated from the heat capacity measurements, attains 50% of the total of 17.7 J K-1 mol-1, close to that expected for three Cu atoms (3R ln 2), up to the long range ordering temperature, and the remaining is associated with the low dimensionality of the material.

Journal Article↗

Unusual 180 degrees P-O-P Bond Angles in ZrP(2)O(7).

The structure of cubic ZrP(2)O(7) at room temperature has been solved and refined using a combination of modeling and high-resolution neutron powder diffraction data. The cell edge is 24.74 Å, the space group is Pa&thremacr;, and Z is 108. For those P(2)O(7) units not on a 3-fold axis, the P-O-P angles range from 134 degrees to 162 degrees. Two crystallographically distinct P(2)O(7) groups are on three fold axes with P-O-P angles thus constrained to be 180 degrees on average. The structure of cubic ZrP(2)O(7) was also refined from data taken at 227, 290, 371, 435, and 610 degrees C. The 3 x 3 x 3 superstructure present at room temperature disappears at about 290 degrees C, and all P-O-P angles of P(2)O(7) are then constrained by symmetry to be 180 degrees on average. The exceptionally low thermal expansion shown by ZrP(2)O(7) above 290 degrees C is likely related to the unusual P-O-P angle.

Journal Article↗

Simultaneous Antiferromagnetic Order and Spin-Glass-like Behavior in MnAsO(4).

A low-temperature time-of-flight neutron powder diffraction study of a simple new solid, MnAsO(4), in a sample also containing 20% Mn(2)As(2)O(7) has been performed. MnAsO(4) orders magnetically at 14.5(5) K, and the unusual antiferromagnetic structure below this temperature has been determined. Only half of the Mn(3+) spins are ordered, and the remaining "idle" spins show some spin-glass behavior evidenced by susceptibility measurements. The ordered moment is reduced to a value of 2.6 &mgr;(B) by frustration. It is not possible to determine which of the two crystallographically inequivalent Mn sublattices is magnetically ordered and which is idle. The antiferromagnetic structure of the minority phase Mn(2)As(2)O(7) which orders at 10.5(5) K has also been determined.

Journal Article↗

Control of magnetic ordering by Jahn--Teller distortions in Nd(2)GaMnO(6) and La(2)GaMnO(6).

The substitution of Ga(3+) into the Jahn--Teller distorted, antiferromagnetic perovskites LaMnO(3) and NdMnO(3) strongly affects both the crystal structures and resulting magnetic ordering. In both compounds the Ga(3+) and Mn(3+) cations are disordered over the six coordinate sites. La(2)GaMnO(6) is a ferromagnetic insulator (T(c) = 70 K); a moment per Mn cation of 2.08(5) mu(B) has been determined by neutron powder diffraction at 5 K. Bond length and displacement parameter data suggest Jahn--Teller distortions which are both coherent and incoherent with the Pnma space group symmetry of the perovskite structure (a = 5.51122(4) A, b = 7.80515(6) A, c = 5.52947(4) A) at room temperature. The coherent distortion is strongly suppressed in comparison with the parent LaMnO(3) phase, but the displacement ellipsoids suggest that incoherent distortions are significant and arise from local Jahn--Teller distortions. The preparation of the new phase Nd(2)GaMnO(6) has been found to depend on sample cooling rates, with detailed characterization necessary to ensure phase separation has been avoided. This compound also adopts the GdFeO(3)-type orthorhombically distorted perovskite structure (space group Pnma, a = 5.64876(1) A, b = 7.65212(2) A, c = 5.41943(1) A at room temperature). However, the B site substitution has a totally different effect on the Jahn--Teller distortion at the Mn(3+) centers. This phase exhibits a Q(2) mode Jahn--Teller distortion similar to that observed in LaMnO(3), although reduced in magnitude as a result of the introduction of Ga(3+) onto the B site. There is no evidence of a dynamic Jahn-Teller distortion. At 5 K a ferromagnetically ordered Nd(3+) moment of 1.06(6) mu(B) is aligned along the y-axis and a moment of 2.8(1) mu(B) per Mn(3+) is ordered in the xy plane making an angle of 29(2) degrees with the y-axis. The Mn(3+) moments couple ferromagnetically in the xz plane. However, along the y-axis the moments couple ferromagnetically while the x components are coupled antiferromagnetically. This results in a canted antiferromagnetic arrangement in which the dominant exchange is ferromagnetic. Nd(2)GaMnO(6) is paramagnetic above 40(5) K, with a paramagnetic moment and Weiss constant of 6.70(2) mu(B) and 45.9(4) K, respectively. An ordered moment of 6.08(3) mu(B) per Nd(2)GaMnO(6) formula unit was measured by magnetometry at 5 K in an applied magnetic field of 5 T.

Journal Article↗