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PubMed2006

Stochastic dynamic model for estimation of rate constants and their variances from noisy and heterogeneous PET measurements.

Tissue heterogeneity, radioactive decay and measurement noise are the main error sources in compartmental modeling used to estimate the physiologic rate constants of various radiopharmaceuticals from a dynamic PET study. We introduce a new approach to this problem by modeling the tissue heterogeneity with random rate constants in compartment models. In addition, the Poisson nature of the radioactive decay is included as a Poisson random variable in the measurement equations. The estimation problem will be carried out using the maximum likelihood estimation. With this approach, we do not only get accurate mean estimates for the rate constants, but also estimates for tissue heterogeneity within the region of interest and other possibly unknown model parameters, e.g. instrument noise variance, as well. We also avoid the problem of the optimal weighting of the data related to the conventionally used weighted least-squares method. The new approach was tested with simulated time-activity curves from the conventional three compartment - three rate constants model with normally distributed rate constants and with a noise mixture of Poisson and normally distributed random variables. Our simulation results showed that this new model gave accurate estimates for the mean of the rate constants, the measurement noise parameter and also for the tissue heterogeneity, i.e. for the variance of the rate constants within the region of interest.

Computer Simulation↗
PubMed1988

Accuracy in radiation field alignment in head and neck cancer: a prospective study.

A prospective study has been performed to determine the accuracy of radiation field alignment for a group of 22 patients with tumors in the head and neck. The accuracy was assessed by an analysis of 138 megavolt portal films in comparison to 55 simulation films. The distance (at the patient midplane) between corresponding points at the field edges on verification film and simulation film appeared to be 5 mm on the average and the standard deviation 5 mm. The analysis was extended by translational and rotational matching of the fields in order to separate each error in a translation error of the field with respect to the patient and an error in field size or shape. Translation errors appear to be somewhat larger than field size or shape errors. From an analysis of a series of megavolt films taken every third radiotherapy session, it was concluded that treatment-to-treatment variations are as large as the errors due to the transition from simulation to treatment situation. Further analysis showed that variation of the patient's position within the cast is clearly one of the error sources.

Head and Neck Neoplasms↗
PubMed2006

Current perspectives in analyte extraction strategies for tin and arsenic speciation.

Nowadays, reliable and robust detectors can be considered standard laboratory instrumentation, which, for most of the elements provide quantitation limits in the lower ng/g range. Despite these advances in detector technology, sample preparation is by far the most important error source in modern analytical method development and can be judged as the "Achilles' heel" of any analytical process regarding reliability of the obtained results and time consumption. The aim of the present review is to highlight modern trends for tin and arsenic speciation, as these analytes can be considered as models for challenges in modern method development in this field. First background information, legislative aspects and current needs are elucidated. Then the role of sample treatment within the process of method development in speciation is discussed, followed by a presentation of modern extraction techniques, matching the requirements for arsenic and tin speciation analysis: to provide mild conditions in order to ensure species preservation, to improve species recovery, to enhance sample throughput and to be suitable for hyphenation with chromatographic separation systems. The review includes applications on tin and arsenic speciation, covering the period of 2001-2006.

Analytic Sample Preparation Methods↗
PubMed2004

Precision and detection limit of quality test for amorphous drug in powder X-ray diffractometry.

This report puts forward a method of powder X-ray diffractometry to estimate the precision and detection limit of the crystalline component in an amorphous drug. Cefditoren pivoxil (CP) was employed as a model drug. The major error source of the measurement at low crystal contents is shown to be the random noise in a diffraction pattern (halo pattern) of the amorphous material. For the analysis of the noise, the obstructive halo pattern should be eliminated from the observed pattern. The subtraction of the observed halo pattern from another one derived from the same material, extracts the random noise alone, although the noise is amplified by square root 2 times. The noise in the powder X-ray diffractometry was identified as the white noise. On the basis of the stochastic properties of the extracted noise and signal parameters (peak area) of CP, the relative standard deviations (R.S.D.) of the area measurements of the crystalline diffraction peaks were estimated over a wide range of crystal contents without repeated experiments. The detection limit was determined such that the crystal content at detection limit produced 30% R.S.D. of the measurements. The R.S.D. and detection limit obtained from FUMI theory were in good agreement with the results from the repeated measurements.

Anti-Bacterial Agents↗
PubMed2004

An expression of within-plate uncertainty in sandwich ELISA.

This paper puts forward a method to describe an equation of the within-plate uncertainty (relative standard deviation (R.S.D.) of measurements) as a function of analyte concentration in sandwich enzyme-linked immunosorbent assay (ELISA). A kit for thyroid stimulating hormone is taken as an example. The pipetting procedures of analyte solution and chromogen-substrate solution and absorbance inherent to the wells of a microplate are identified as major error sources and their variability is included as parameters in the uncertainty equation. These parameters can be determined by the experiments with distilled water. The theoretical R.S.D. is shown to be in good agreement with the results of the repeated experiments using the real samples. Since the theory gives a continuous plot of R.S.D. against concentration, the uncertainty structure of the ELISA kit can be recognized over a wide concentration range and the detection limit and quantitation range can easily be determined on the plot.

Enzyme-Linked Immunosorbent Assay↗
PubMed2006

Intravascular effect in velocity-selective arterial spin labeling: the choice of inflow time and cutoff velocity.

Velocity-selective arterial spin labeling (VS-ASL) tags spins on a basis of flow velocity, instead of spatial distribution that has been commonly adopted in conventional ASL techniques. VS-ASL can potentially generate tags that are very close to the imaging plane and whereby avoid the error source of transit delay (deltat) variation independent of inflow time (TI). In practice, however, TI of VS-ASL should still be chosen with caution with respect to intravascular signal and cutoff velocity (V(c)). The presented study takes advantage of multiple TI and V(c) to systematically investigate the intravascular effect. Results demonstrate the presence of significant signal from large vessels in VS-ASL images for V(c) down to 4 cm/s. For perfusion measurement in human brain, low V(c) (<4 cm/s) is recommended. With V(c) = 2 cm/s, quantitative cerebral blood flow is 72.8 ml/100 ml/min, which is in agreement with the reported range using conventional ASL methods. In field strength of 3 T, numerical simulation shows that optimal signal-to-noise ratio efficiency can be achieved with TR/TI = 2092 ms/1664 ms for single slice and 4493 ms/1404 ms for slab imaging.

Arteries↗
PubMed2006

Ultrasonic measurement of anisotropy and temperature dependence of elastic parameters by a dry coupling method applied to a 6061-T6 alloy.

A pulse-echo ultrasonic method is presented to measure elastic parameter variations during thermal loading with high accuracy. Using a dry coupling configuration dedicated to high temperature investigation, this technique has been applied on 6061-T6 aluminium samples up to 220 degrees C. Experimental settings are described to assess the measurement reproducibility estimated at a value of 0.2%. Consequently, the anisotropy of this aluminium between the rolling direction and two orthogonal axes has been clearly detected and also measured versus temperature. As regards the temperature dependence of these elastic parameters, these results are compared with the estimations of the Young's modulus obtained during mechanical tests in conditions of low cycle fatigue (LCF). The same linear variation versus temperature is found but with a shift of 7GPa. This difference has been classically attributed to systematic experimental error sources and to the distinction existing between dynamic and static elastic modulus.

Alloys↗
PubMed2000

Equations of state for POPX lipids at the air/water interface. A comprehensive study.

We have investigated monomolecular fluid-like films of palmitoyl oleoylphosphatidyl lipids with choline, glycerol and serine head groups, respectively. Conventional Langmuir trough experiments have been evaluated towards a thermodynamic analysis applying a novel approach that was recently developed in this laboratory. Our work involves elaborate efforts to exclude possible error sources of the basic measuring parameters. By means of pertinent mass conservation plots it could then be shown that the present lipids form a practically insoluble monolayer. Relative deviations of the lateral pressure from its ideal (gaseous) value are seen to be a very pronounced linear function of the surface concentration (between 1 and about 35 mN/m). They reveal a clearly manifested Boyle point around 4 mN/m, indicating formation of aggregates in the very low pressure range. The results are discussed in terms of a rather simple quantitative formulation of the underlying equation of state including fit curves of the related partial molecular area and Gibbs free energy.

Phosphatidylcholines↗
PubMed1998

A standardized procedure for locating and documenting ECG chest electrode positions: consideration of the effect of breast tissue on ECG amplitudes in women.

Continuing uncertainty exists about standardized procedures for the placement of electrocardiographic (ECG) chest electrodes, technical variability being the largest error source for short-term variations in amplitudes and waveforms of the chest lead ECGs. To avoid presumed attenuation of ECG amplitudes by abundant breast tissue, anterolateral chest electrodes in women are often placed under the breasts and too low. There is also considerable uncertainty about locating the midclavicular line and the V4 electrode, particularly in obese persons and in women. We examined the effect of breast tissue protuberance on ECG amplitudes using ECG and anthropometric data on 6,814 women included in the Atherosclerosis Research in Communities Study (ARIC). The R wave amplitudes in anterolateral chest leads and the Sokolow-Lyon voltage decreased (P < .001 for all), and RaVL and the Cornell voltage increased significantly with increasing breast protuberance (P < .001 for all). However, these effects were small (15 microV or less for each 1-cm increment in breast protuberance), and R2 values were less than .01, indicating that breast protuberance alone explained less than 1% of ECG amplitude variations. When chest size and breast protuberance estimates were entered simultaneously into a multivariate regression model, chest size appeared to dominate, and model R2 values increased for positive associations with RaVL (R2 = .12) and the Cornell voltage (R2 = .04). Combined model R2 values remained < or =.01 for all other ECG amplitudes. A detailed step-by-step standardized electrode placement procedure was formulated. Because of the difficulties encountered in locating the left midclavicular line by visual inspection, we introduced well-defined procedures for identification and documentation of lateral chest electrode placement locations as a quality control method for clinical trials. Population data from the Third National Health and Nutrition Survey on the distributions by sex and race of chest electrode V4 and V6 locations and anthropometric data on chest size and shape are presented in order to facilitate evaluation of the comparability of electrode placement procedures in various studies and for quality control in clinical trials. It is concluded that standardized procedures to document chest electrode placement locations are feasible. Breast tissue appears to have a practically negligible effect on ECG amplitudes, and in women, the placement of chest electrodes on the breast rather than under the breast is recommended in order to facilitate the precision of electrode placement at the correct horizontal level and at the correct lateral positions.

Aged↗
PubMed1984

Localization of flexible sites in thread-like molecules from electron micrographs. Comparison of interstitial, basement membrane and intima collagens.

A computer method for detecting kinks and flexible sites in thread-like molecules was developed. The method is based on the determination of the local curvature along the digitized electron micrographs of the molecules. The root-mean-square curvature provided a measure for the local flexibility, which is related to the persistence length. The influence of various error sources was assessed using computer-simulated thread molecules. "Flexibility profiles" showing the variation of flexibility along molecules were calculated for interstitial, basement membrane and intima collagens. Approximately uniform stiffness corresponding to a persistence length of 60 nm was found for the triple helices of interstitial and monomeric intima collagen. A highly flexible site in interstitial collagen could be assigned to a non-triple helical segment in the sequence surrounding the linkage site of the N-terminal propeptide. A flexible site in the triple helix of collagen I corresponds to a segment of the sequence lacking proline residues. Flexibility varies strongly along the collagen IV molecule. This is consistent with the fact that a series of non-triple helical interruptions have already been found in the not yet completed amino acid sequence of basement membrane collagen. Most of the detected flexible sites allow random bending about the mean zero, but in one case, at the border of the 7S domain of polymeric collagen IV, a flexible site with a preferential angle of 40 degrees was found.

Animals↗
PubMed2004

Possible influence of lipid content on levels of organochlorine compounds in mussels from Galicia coast (Northwestern, Spain). Spatial and temporal distribution patterns.

Influence of lipid content of mussel on levels of organochlorine compounds (polychlorinated biphenyls [PCBs] and OC pesticides) has been studied. Mussel samples coming from three sites in Galicia coast (Northwestern, Spain), Moaña and Cangas C from Ría de Vigo and Barallobre from Ría de Ferrol, collected monthly in the period from November 2000 to October 2001, have been analysed. Organochlorine compounds, PCBs (IUPAC nos. 31, 28, 52, 101, 118, 153, 105, 138, 156 and 180) and OC pesticides (pp'-DDE, op'-DDT, pp'-DDT, aldrin, isodrin and endrin) have been extracted by means of Soxhlet and determined by using gas chromatography (electron capture detector [ECD]) and gas chromatography-mass spectrometry. Statistical analysis has been performed using the SPSS statistical package. Few compounds were correlated with lipid content (Pearson product-moment correlation); for samples coming from Barallobre, only the individual PCBs 31, 28, 52 (tri- and tetrachlorinated biphenyls) and 180 (heptachlorinated biphenyl) presented a significant correlation; for Moaña samples, two cyclodiene pesticides, endrin and isodrin, presented a slight significant correlation with lipid content. From these results, it is deduced that the normalization of the concentration of organochlorine compounds to the lipid content is not necessary, in this way, avoiding possible error sources associated to the analytical determination of the lipid contentor reproductive status of mussel. Multivariate techniques (PCA) have been employed in order to study spatial and temporal distribution patterns of organochlorine compounds. The great differences found in studied samples are mainly related to spatial distribution: separations between estuarine bays (samples coming from Ría de Vigo and Ría de Ferrol) and between rural and urban zones (samples coming from Moaña and Cangas C and samples from Barallobre, respectively).

Animals↗
PubMed2002

Reliability of two calculation codes for efficiency calibrations of HPGe detectors.

This paper reports the reliability of efficiency calibrations for gamma-ray detectors using the calculation codes ANGLE and LabSOCS. For experimental verification, three HPGe detectors under various laboratory geometry configurations were used for this study. An overall comparison between experimental and calculated efficiency calibration curves is presented and comments on the various error sources affecting the final results are given. The deviations are generally below 10%, which could be acceptable for many applications.

Journal Article↗
PubMedDate not supplied

Evaluation of the suitability of various gamma lines for the gamma spectrometric determination of 238U in environmental samples.

Gamma-ray spectrometry is extensively used for 238U determination because of its simplicity in terms of sample preparation. Nevertheless, processing of measurement data presents several challenges, such as evaluation of overlapping photopeaks and calibration of detector efficiencies for different matrices and photon emissions. Besides, the emission probability data for 238U and its daughters show significant discrepancies among different studies. In this study, we assess the suitability of four methods, using the photopeaks at 63.3, 92.6, 766.4 and 1001.0 keV, respectively, to determine 238U in environmental samples. With that aim we analyse several reference and environmental samples, detailing the entire procedure involved in the calculation of the 238U activities and highlighting possible error sources. Based on the results obtained, we propose new yields for the 234Th photons and compare these to corresponding values from the literature.

Algorithms↗
PubMed2002

Artifacts and unassigned masses encountered in peptide mass mapping.

In peptide mass mapping of isolated proteins, a significant number of the observed mass spectral peaks are often uninterpreted. These peaks derive from a number of sources: errors in the genome that give rise to incorrect peptide mass predictions, undocumented post-translational modifications, sample handling-induced modifications, contaminants in the sample, non-standard protein cleavage sites, and non-protein components of the sample. In a study of the stalk organelle of Caulobacter crescentus, roughly one-third (782/2215) of all observed masses could not be assigned to the proteins identified in the gel spots (Karty et al., J. Proteome Res., 1 (2002) 325). By interpreting these masses, this work illuminates a number of phenomena that may arise in the course of peptide mass mapping of electrophoretically separated proteins and presents results from a number of related studies.

Amino Acid Sequence↗
PubMed1991

Choice and conflict about census data: adjusting the American census count.

In this paper "reasons for inevitable defects in the census count are listed in the first section; the second section reports efforts by the U.S. Census Bureau to identify sources of error in census coverage, and make estimates of the size of the errors.... The paper describes the conflict between statistical practices, laws and public policy about census adjustment in the United States, and concludes by considering the extent to which causes [of error] in America are likely to be found in other countries."

Americas↗
PubMed1989

High-accuracy gas analysis via isotope dilution mass spectrometry: carbon dioxide in air.

An absolute method, based on isotope dilution mass spectrometry, is described for the determination of atmospheric concentrations of carbon dioxide (CO2) in dry air. In this study, the relative amounts of sample and spike gases are measured manometrically under temperature control before blending. The spike CO2 composition is approximately 0.1 atom % 13C while the oxygen isotopic composition is "normal". Exhaustive assessment of potential error sources leads to accountability of observed imprecision and determination of accuracy confidence intervals (CI). The imprecision interval (95% CI) about the mean is smaller than +/- 0.1% (+/- 0.4 mumol/mol) while the accuracy interval (95% CI) is +/- 0.15% (+/- 0.52 mumol/mol) for air having a CO2 concentration of about 350 mumol/mol. Calculated concentrations of CO2 are statistically indistinguishable from those generated by gravimetry, an independent method of analysis. In this study, the major contributors to uncertainty and imprecision are the predetermination of the gas volume ratio and the measurement of the isotopic composition of the blended CO2, respectively.

Air↗
PubMed2006

Reassessment of large dipole moment enhancements in crystals: a detailed experimental and theoretical charge density analysis of 2-methyl-4-nitroaniline.

The molecular dipole moment of MNA in the crystal has been critically reexamined, to test the conclusion from an earlier experimental charge density analysis that it was substantially enhanced due to a combination of strong intermolecular interactions and crystal field effects. X-ray and neutron diffraction data have been carefully measured at 100 K and supplemented with ab initio crystal Hartree-Fock calculations. Considerable care taken in the measurement and reduction of the experimental data excluded most systematic errors, and sources of error and their effects on the experimental electron density have been carefully investigated. The electron density derived from a fit to theoretical structure factors assisted in the determination of the scale and thermal motion model. The dipole moment enhancement for MNA in the crystal is much less than that reported previously and only on the order of 30-40% (approximately 2.5 D). In addition to the dipole moment, experimental deformation electron density maps, bond critical point data, electric field gradients at hydrogen nuclei, and atomic and group charges all agree well with theoretical results and trends. Anisotropic modeling of the motion of hydrogen atoms, integral use of periodic ab initio calculations, and improved data quality are all aspects of this study that represent a considerable advance over previous work.

Journal Article↗
PubMed1998

Gender differences in the diagnosis of mental disorders: conclusions and controversies of the DSM-IV.

One of the more controversial issues in terms of mental disorder diagnoses has been their differential sex prevalence. The conclusions provided in the 4th edition of the American Psychiatric Association's (1994) Diagnostic and Statistical Manual of Mental Disorders were derived from systematic reviews of the research literature. However, this research is perhaps complicated by common sources of error. Two sources, in particular, are emphasized here: biases in sampling and biases within the diagnostic criteria themselves. The potential for such biases is illustrated for a wide variety of mental disorder diagnoses, and suggestions for research to address them are provided.

Age Factors↗