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PubMedDate not supplied

Microcomputer-based spike train analysis.

A system has been developed to analyse statistically the information contained within neuronal spike trains in the central nervous system. The system consists of a microprocessor development system, together with the peripheral components and transducers. Suitable software packages have been developed to analyse statistical parameters including the mean, variance, entropy, conditional entropy, serial correlation coefficients, Markov dependency and Markov order. By linking up the required routines, the system is capable of responding in real-time and plotting the desired results from the spike train obtained. Such system has been used to study the neuronal spike trains recorded from central vestibular neurons which could be affected by positional changes, anaesthetics and various drugs for the relief of motion sickness.

Animals↗
PubMed1982

A BASIC microcomputer program for plotting the secondary structure of proteins.

An Applesoft BASIC program is presented which allows one to readily graph the secondary structure of a protein on the basis of information derived from its amino acid sequence. This applies the Chou/Fasman rules of predictions to the alpha-helix, beta-sheet and coil conformational parameters. The program produces a first approximation and provides the additional feature which permits specific modification in the plotted structure. These modifications produce a plot comparable to the existing data obtained from X-ray crystallography and manual computations.

Amino Acid Sequence↗
PubMed1982

A microcomputer-aided system for the graphic reproduction of neurohistochemical maps.

In this report we describe the computer hardware and software used in the production of microscopic maps from histochemical data. The maps may consist of lines, shaded and symbols, each drawn in any of four styles and in any of four colors. The system employs a microscope stage digitizer and plotter to produce an initial map containing precise positional information. A desktop computer equipped with a four-color digital plotter and a digitizing tablet is used to produce the final map. The positional information of the initial map is traced on the computer's digitizer to produce the final map. The software enabling this transformation is specialized for three basic types of structures. Cytoarchitectural landmarks and macroscopic morphology are represented by lines. Areas of a microscopic field which have some degree of visibly definable characteristics such as axonal staining are represented by areas shaded with dots. Microscopic structures of individual interest are represented by various symbols. Other program options allow the computation and printing of figure areas and perimeters while digitizing shaded areas, storage of all map information on a mass-storage medium, the drawing of alignment registration marks, and flexible access to and prompting for all program options. While the role of the anatomist in recognition and discrimination of meaningful histochemical information is unchanged, production of microscopic maps using this system consumes far less time than hand methods and results in uniform, accurate illustration.

Animals↗
PubMedDate not supplied

NEUREC - a program package for 3D-reconstruction from serial sections using a microcomputer.

A software package is described to reconstruct three-dimensional pictures in true perspective from a series of parallel sections using a low-cost computer system (Apple II plus). Data sampling via a graphic tablet and graphical output on the monitor screen or a digital plotter are assigned to different programs under control of a menu program. The number of data representing the object under study is unlimited. Originally written in BASIC, the programs were translated to machine language. As an application of the package, reconstructions of an identified large interneuron of the locust brain are presented.

Animals↗
PubMed1984

A microcomputer system for monitoring and analysing oxyhemoglobin saturation during sleep.

A computerized data acquisition and analysis routine was developed to quantitate respiratory disturbances in sleeping patients. Polysomnographic recordings of patients consisted of electroencephalograms, electro-occulograms, submental electromyograms, air flow at the nose and mouth, esophageal pressure, and oxyhemoglobin saturation (SaO2). SaO2, a physiological effect of ventilatory airflow, was sampled every two seconds and stored on disk during the night's study for subsequent analysis. Wild points in the data file can be marked so that they will be skipped during analysis. Patient polysomnographs were scored manually for sleep stage by a sleep technician. A file was then created containing the scored sleep information with time marks corresponding to each change in sleep stage during the study. An analysis routine used this file to develop indices of sleep apnea, severity for combinations or specific stages of sleep. These indices were: (A) number of oxyhemoglobin desaturation episodes per hour; (B) average maximum desaturation per episode; and (C) desaturation index, the product of (A) and (B). A graph was plotted showing cumulative sleep time at given SaO2 values. The degree of sleep apnea can be determined using these indices.

Computers↗
PubMed1989

A-to-D conversion from paper records with a desktop scanner and a microcomputer.

A novel method for digitizing signals contained in paper records is presented. This method is based on the use of an inexpensive optical scanner to translate the image on paper into a binary, bit map data structure. Several algorithms which recognize the signal line in the bit map and translate it into a series of numbers which are equivalent to the output of electronic analog-to-digital converters are described. The method was validated by comparison both with idealized test patterns of varying frequency content and with electronically digitized pressure and pressure time derivative tracings from chronically instrumented dogs. The root mean square error for the physiological signals was 3.5-3.9% of peak-to-peak full scale, corresponding to roughly 50% more than the thickness of the signal line on the paper.

Algorithms↗
PubMed1983

Microcomputer evaluation of cerebral blood flow velocity studies in the neonate.

A semi-automated system for evaluation of Doppler cerebral blood flow studies obtained from newborn infants is described. A low cost digitizer is used to convert the graphic data from the flow tracing to digital data. A small business computer is used to analyze the data and produce a chartable report. The reliability of the digitizer is also evaluated.

Blood Flow Velocity↗
PubMed1985

Using a microcomputer and video camera to simultaneously track 25 animals.

A system that can simultaneously track about 25 animals with the position of each determined once a second is described. The system includes a 6809 microprocessor, OS-9 operating system and application programs written in assembly and BASICO9. The movements and changes in direction of the subjects can be determined and displayed in real time. The system has proven to be valuable in studying the chemotaxis of nematodes and should be applicable to the study of other animals that can be viewed with high contrast.

Animals↗
PubMed1985

On line determination of airway resistance by plethysmography and microcomputer.

On line determination of airway resistance is carried out by an Apple II connected to a flow body plethysmograph. Recognition of the panting maneuver is performed in real time. Linear drift of plethysmographic volume V is eliminated by taking the derivatives V and Vm of V and mouth flow Vm. Linear regression of V on Vm yields an estimate R of airway resistance, at a volume close to functional residual capacity FRC. The values of FRC is given by linear regression of V on Pm, the derivative of mouth pressure. No significant difference has been found between the estimates of the specific conductance sG calculated by linear regression and by spectral analysis of V and Vm. As variability of sG can be kept below 10%, the regression technique appears to be reliable for routine patient testing and pharmacological studies.

Airway Resistance↗
PubMed1990

DataVoice: a microcomputer-based general purpose voice-controlled data-collection system.

An integrated system of hardware and software has been developed to combine the input of coordinate data from a digitizing pad with voice input for object identification or classification. The menu and voice-controlled software generates a sequential ASCII file which contains an object identification section and a data section. Rules for data entry and analysis programs have been developed for several applications. These are being tested and include general stereological analyses, bone, kidney and skin histomorphometry, boundary analyses, neuron classification and malignancy grading.

Artificial Intelligence↗