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PubMed2001

Cross-axis adaptation of pursuit initiation in humans.

PURPOSE: The initial acceleration of pursuit in the open-loop period is under adaptive control and undergoes motor learning. The current study was undertaken to examine the hypothesis that the direction of pursuit initiation can also be adaptively modified. METHODS: Four neurologically and ophthalmologically normal subjects participated in the experiment. A modified step-ramp paradigm was used to induce cross-axis adaptation, in which a ramp target changed its direction orthogonally just after the target crossed the center. Four direction changes were tested in separate experiments: left to up, left to down, down to left, and up to left. During a 30-minute adaptation session, the target moved in one of two randomly chosen directions (right to left or up to down) at one of two randomly chosen speeds (15.6 or 22.3 deg/sec), but the target changed orthogonally in only one direction. A linear regression fit to the initial 100-msec segment of the pursuit trace was used to determine the direction of pursuit initiation. RESULTS: In all cases, an adaptive change in pursuit initiation was gradually induced in the direction called for by the training paradigm. Adaptation was usually completed (90 degrees shift) within the 30-minute training session but declined quickly to an approximate 30 degrees -shift after training. The latency and vectorial amplitude of the initial acceleration remained unchanged. The adaptation was specific for the direction but not the velocity of the target. CONCLUSIONS: This study showed that the direction of pursuit initiation is under adaptive control, as has been shown for saccadic eye movements and the vestibulo-ocular reflex.

Adaptation, Ocular↗
PubMed2002

Impaired vertical phoria adaptation in patients with cerebellar dysfunction.

PURPOSE: To determine whether phoria adaptation to a vertical prism disparity is altered in patients with cerebellar dysfunction. METHODS: With a computer-aided haploscope, adaptive responses of fusion-free eye position to a 10- or 30-minute period was measured in subjects wearing a 3-prism diopter vertical prism over one eye. Thirteen patients with well-documented cerebellar diseases who did not have manifest ocular misalignment or limited versional eye movement and age-matched healthy subjects participated. RESULTS: The mean +/- SD percentage of vertical phoria adaptation was 13% +/- 22% and 20% +/- 16% for the 10- and 30-minute adaptations, respectively. These levels were significantly smaller than the respective ones in the age-matched control group (P < 0.001, repeated measures MANOVA). Seven (54%) of 13 patients, including two with genetically confirmed pure cerebellar lesions (spinocerebellar ataxia type 6), showed markedly reduced responses to both the 10- and 30-minute adaptations. In all three patients with acute cerebellar ataxia, the adaptive response was improved at the same time as remission of cerebellum-associated neurologic deficits. CONCLUSIONS: Phoria adaptation to vertical binocular disparity is frequently impaired in patients with cerebellar dysfunction. These results bolster the hypothesis that phoria adaptation is a cerebellar-dependent response.

Adaptation, Ocular↗
PubMedDate not supplied

[Analysis of mechanisms underlying adaptation processes].

A system of elementary adaptation mechanisms is presented. The adaptations are considered as transients to a new homeostatic condition induced by an environmental change. We propose to distinguish adaptation mechanisms not directly related to gene expression (changes in the rate of synthesis and degradation of proteins, protein-ligand interactions, changes in viscosity of the membrane lipids) and the mechanisms relying on gene expression (changes in expression of already functioning genes, expression of new genes, mutations). Most of these mechanisms have phenotypic nature and just one (mutations) is genotypic. By the nature and time pattern of the environmental influence the adaptation processes can be divided into four types: phenotypic adaptations under rapidly (A) or gradually (B) alternating environmental factors, genotypic adaptations induced by an instant change (mutation) (C), and step adaptational changes (several or many mutations) (D). We propose a model based on a (second-order) linear differential equation qualitatively describing all four types of the adaptation processes.

Adaptation, Physiological↗
PubMed1992

[Role of the inositol phosphate cycle in the cardioprotective effect of adaptation to intermittent hypoxia].

The impact of adaptation to intermittent hypoxia of different duration (for 20 and 40 days) on the inositol triphosphate-diacylglycerol (ITP-DAG) regulatory contour in the heart was investigated. For this, isolated heart alpha 1-adrenoreactivity to phenylephrine and phospholipase (PhL-C) activities were studied in cardiac plasma membranes. On day 20 of adaptation, the heart inotropic response to phenylephrine stimulation was somewhat reduced and the activity of Ca(2+)-dependent PhL-C did not differ from that in the controls within the range of Ca2+ physiological concentrations. Forty days after adaptation, both positive inotropic responses of the heart to phenylephrine and activity of Ca(2+)-dependent PhL-C were enhanced, i.e. activation of the ITP-DAG regulatory cascade occurred. Early studies have shown that a phenomenon of adaptive stabilization develops at this stage of adaptation. The phenomenon appears as a significant increase in heart resistance to thermal injury, toxic catecholamine levels, Ca2+ paradox and high Ca2+ concentrations. Thus, the revealed activation of the ITP-DAG regulatory contour was accompanied by the development of a phenomenon of adaptive structure stabilization (PhASS) in the hearts of adapted animals. The findings suggest that the ITP-DAG regulatory cascade plays an important role in the cardioprotective effect of adaptation to intermittent hypobaric hypoxia and in PhASS formation.

Adaptation, Physiological↗
PubMed2003

Spatial perception changes associated with space flight: implications for adaptation to altered inertial environments.

Preparation for extended travel by astronauts within the Solar System, including a possible manned mission to Mars, requires more complete understanding of adaptation to altered inertial environments. Improved understanding is needed to support development and evaluation of interventions to facilitate adaptations during transitions between those environments. Travel to another planet escalates the adaptive challenge because astronauts will experience prolonged exposure to microgravity before encountering a novel gravitational environment. This challenge would have to be met without ground support at the landing site. Evaluation of current adaptive status as well as intervention efficacy can be performed using perceptual, eye movement and postural measures. Due to discrepancies of adaptation magnitude and time-course among these measures, complete understanding of adaptation processes, as well as intervention evaluation, requires examination of all three. Previous research and theory that provide models for comprehending adaptation to altered inertial environments are briefly examined. Reports from astronauts of selected pre- in- and postflight self-motion illusions are described. The currently controversial tilt-translation reinterpretation hypothesis is reviewed and possible resolutions to the controversy are proposed. Finally, based on apparent gaps in our current knowledge, further research is proposed to achieve a more complete understanding of adaptation as well as to develop effective counter-measures.

Adaptation, Psychological↗
PubMedDate not supplied

Theoretical and semantic aspects of the modular physiological adaptation.

Adaptation is a fundamental concept in biology. The use of this notion in physiology presents a special problem, on the one hand, due to its widespread application to practically all physiologic phenomena of organic economy, on the other hand, because there is no formal definition providing a demarcation between adaptive processes and secondary processes without relating them with adaptation. Therefore, the objective of this work is to formalize a modular definition of adaptation that allows a differentiation between adaptive processes and non adaptive ones. I conclude that the use of the concept of 'module' in the definition of adaptation makes it possible to demarcate adaptive processes. Furthermore, the proposed definition lets us eliminate the use of notions such as those of 'features' and 'characteristics' and solve a methodological problem encountered at organizational levels.

Adaptation, Physiological↗
PubMedDate not supplied

[Adaptivity of social systems: the problem for scientific research].

The notion of adaptive evolution of social systems as of a real process of selection of the properties of such systems implies group selection. But strong evidences of effective group selection seem impossible, at least in vertebrates. However, understanding the origin of social systems adaptivity based on individual selection is difficult, as well, without analyzing the proximal mechanisms of the formation of such systems. I suppose that social systems change due to changes of individual features that underlie the proximal mechanisms of the system formation. These features are the characteristics of neurophysiological and hormonal regulatory mechanisms. They are strongly associated with intrinsic biochemical processes and are coded in the genome. Thus, the evolution of social systems is the evolution of their proximal mechanisms. At the same time, the specificity of neurophysiological and hormonal regulation determines not only social interactions, but also the individual behaviour of animals. The most important characteristics of life history, such as the regime of activity, foraging strategy, etc., are strongly affected by the same regulatory mechanisms. This view is useful for understanding the relations combining many features into an integrated and adaptive species-specific life form. I suppose that such forms emerged as evolutionary consequences of changes in regulatory mechanisms adaptive to specific environment. Thus, we have as substantial reasons to discuss adaptations of social systems to ecological features as to discuss ecological features adapted to particular social systems. The species-specificity of regulatory mechanisms is probably based on different kinds of evolutionary choice between the rapidity and the perfection of adaptation, between flexibility and stability, and between sensibility and resistibility. I think that this choice depends largely on the predictability of the environment. The less predictable it is, the more it increases the selective value of sensibility, flexibility, and rapidity of evolution. On the contrary, stable and predictable environment stimulates less rapid but more perfect adaptations. Such choices consolidate in the genome during evolution as specific features of neurophysiological and hormonal regulation systems. These specific features, in their turn, determine ecological, behavioural, and physiological species-specificity. From this point of view, evolutionary changes in social systems can be readily perceived as consequences of the selection of individuals, promoting optimal properties under particular conditional features of regulation systems. The boundary condition for this model is the absence of specificity of the characteristics of regulation systems to different forms of stress. This condition needs to be considered closely.

Adaptation, Physiological↗
PubMed1983

Frequency-selective adaptation: evidence for channels in the vestibulo-ocular reflex?

The vestibulo-ocular reflex (VOR) is under long-term adaptive regulation to minimize retinal image slip during head movement; normally this process keeps VOR gain (eye velocity divided by head velocity) near 1.0. It has been common to think of the adaptive mechanism as a single pure gain element, although some properties of the system (e.g., frequency-selective changes in the gain of the VOR) argue that it must be more complex. We now report new observations on the frequency selectivity of the adaptive mechanism. Our data suggest a new model in which the VOR operates as a series of parallel, temporal frequency channels, each of which has an independently adjustable gain element. Adaptive changes were produced by oscillating monkeys sinusoidally at a single temporal frequency (0.2 or 2.0 Hz) in visual conditions that cause either increases (toward two) or decreases (toward zero) in VOR gain. When tested in darkness at the adapting frequency, the VOR showed large changes in gain and little or no change in phase. When tested at frequencies other than the adapting frequency, the VOR showed less pronounced changes in gain and unexpected changes in phase. The phase changes were orderly but depended in a complex way on adapting frequency, testing frequency, and VOR gain. We have tested the channels concept by calculating the response properties of a mathematical model that processed its inputs in parallel pathways. The model reproduced our data when we assumed that the vestibular primary afferents were distributed in an orderly way to parallel brain channels that had differing dynamics: vestibular inputs with more phase lead projected to higher frequency channels, which themselves had faster dynamics than their low frequency counterparts. Such an organization, when regulated by an adaptive controller that can selectively alter the gain of one channel, could play a key role in establishing and maintaining the frequency-independent performance seen in the adult VOR.

Adaptation, Physiological↗
PubMed1984

Adaptation of tonic accommodation.

We compared the resting (dark) focus of accommodation before and after adapting to accommodative stimuli placed nearer or farther from an initial baseline resting focus. Short-term monocular adaptation (less than 2 min) did not result in consistent after-effects that were correlated with the adaptation stimulus. After short-term adaptation, accommodation returned to its resting level in 2-15 s. Long-term monocular adaptation (30 min) to a 6-D near stimulus resulted in a small (0.5-D) average increase in the resting focus of accommodation beyond the normal 2-15-s short-term decay. These observations illustrate a tonic adaptation of accommodation that is small and requires longer durations of adaptation than an analogous adaptation of the fusional vergence system to prism.

Accommodation, Ocular↗
PubMed1983

Alterations of fibronectin and reticuloendothelial phagocytic function during adaptation to experimental shock.

Fibronectin is a large molecular weight glycoprotein that participates in opsonization as well as in adhesive structural tissue support. The effect of repetitive low grade traumatic shock on circulating fibronectin, opsonic activity, and RES phagocytic function was studied in rats during the process of adaptation to trauma. Enhanced hepatic Kupffer cell phagocytic activity was observed in rats that were resistant to trauma. During the adaptation process, serum fibronectin levels, as measured by immunoassay, were altered markedly and manifested a pattern of acute deficiency early post-trauma followed by rebound and sustained elevation of fibronectin greatly in excess of control levels. At the time adaptation to trauma was achieved, the circulating fibronectin was within the normal range. In an in vitro system, livers from adapted rats exhibited increased phagocytic ability. The data suggest that Kupffer cell activation occurs during the development of adaptation to trauma and that increased hepatic RE activity accounts for the overall increase in RES clearance seen in the trauma-adapted animals. Since repetitive low grade trauma, which can lead to adaptation, will cause immunoreactive opsonic fibronectin levels to become substantially higher than normal throughout much of the duration of the adaptation protocol, it is possible that this excessive circulating fibronectin represents a means by which local conditioning of blood vessels to trauma may be achieved. Most likely, this would be due to incorporation of the circulating fibronectin into the insoluble tissue fibronectin pool, which has been recently shown to take place. The findings suggest that RES function and fibronectin may be factors influencing trauma tolerance.

Adaptation, Physiological↗
PubMed1983

[On the concept of adaptation].

The presented paper concerns the problem of adaptation and its relations to diseases and compensation. Adaptation is a quality of the healthy life and belongs in this manner to the kinds of epigenetic regulation. Disease and adaptation are strongly to distinguish. In relation to the disease the ability of adaptation is in so far of importance as a disease develops in the case of a diminished adaptation. The individual different adaptability is responsible for the different effects of pathogenic factors. Adaptation and compensation represent different qualities. A definition of adaptation is proposed.

Adaptation, Physiological↗
PubMed1995

[The adaptive-compensatory reactions in adjusting to space flights].

In this paper an evolutionary approach is used to substantiate the steps of life evolution on Earth towards overcoming the gravitational forces with the formation of metabolic cycles controlling the energetic of anti-G processes. The step of an adaptation to hypogravity was similar to return of surface animals to an aquatic environment. The impossibility of coming back to land was the "price" of adaptation to the aquatic environment. This phenomenon was used by the author as a logical model of human adaptation to a weightless environment. The concept of adaptation is examined from two points of view: adaptation and compensation. The scheme contains 4 steps of adaptation to space mission environments: Step I-preadaptation (phase of primary reactions); Step II-compensation of body structures not being in line with the conditions of a novel environment; Step III-the formation of parameters of an organism corresponding to the norm of adaptation to weightlessness; Step IV-the return of cosmonauts to Earth under hypergravity conditions. In compliance with these steps we consider the tasks of supporting space missions to facilitate body readaptation after return to Earth, i.e., to decrease the "price" of adaptation.

Adaptation, Physiological↗
PubMedDate not supplied

[Magnetic fields, adaptation reaction and self-organization of live systems].

It is shown that general nonspecific adaptational reactions are the basis for mechanism of magnetic field effects at the organism level. The character of changes in organism and its subsystems (pattern of a general nonspecific adaptational reactions) is determined by the type of the reaction developing under magnetic field: stress or unknown before antistress reactions of training, calm activation and enhanced activation. The protection and damages under stress are interwoven, homeostatic parameters go beyond norm. Patterns of antistress general nonspecific adaptational reactions are within norm: for training reaction-within the lower half, calm activation-upper half, enhanced activation-somewhat above norm. The induction and frequency dependence of the reactions is periodical: as the parameters are changed to a certain coefficient a regular reiteration of general nonspecific adaptational reactions as topologically invariant transformations is observed at different reactivity levels of organism. General nonspecific adaptational reactions of superior reactivity levels (under weak of magnetic fields of lowest frequency) are more favourable, general nonspecific adaptational reactions of low levels have features of strain, desynchronization. Antistress general nonspecific adaptational reactions, especially activation reaction of superior reactivity levels, enhance nonspecific resistance, in contrast to stress without any damages or waste of energy, produce antitumor, protective (in reference to toxic agents and X-radiation) and rejuvenation effects, promoting self-organization. Regularities of general nonspecific adaptational reactions correspond to complex unequilibrium systems behavior.

Adaptation, Physiological↗
PubMed2025

Pan-Genome Analysis Reveals Local Adaptation to Climate Driven by Introgression in Oak Species.

The genetic base of local adaptation has been extensively studied in natural populations. However, a comprehensive genome-wide perspective on the contribution of structural variants (SVs) and adaptive introgression to local adaptation remains limited. In this study, we performed de novo assembly and annotation of 22 representative accessions of Quercus variabilis, identifying a total of 543,372 SVs. These SVs play crucial roles in shaping genomic structure and influencing gene expression. By analyzing range-wide genomic data, we identified both SNPs and SVs associated with local adaptation in Q. variabilis and Quercus acutissima. Notably, SV-outliers exhibit selection signals that did not overlap with SNP-outliers, indicating that SNP-based analyses may not detect the same candidate genes associated with SV-outliers. Remarkably, 29%-37% of candidate SNPs were located in a 250&#x2005;kb region on chromosome 9, referred to as Chr9-ERF. This region contains 8 duplicated ethylene-responsive factor (ERF) genes, which may have contributed to local adaptation of Q. variabilis and Q. acutissima. We also found that a considerable number of candidate SNPs were shared between Q. variabilis and Q. acutissima in the Chr9-ERF region, suggesting a pattern of repeated selection. We further demonstrated that advantageous variants in this region were introgressed from western populations of Q. acutissima into Q. variabilis, providing compelling evidence that introgression facilitates local adaptation. This study offers a valuable genomic resource for future studies on oak species and highlights the importance of pan-genome analysis in understating mechanism driving adaptation and evolution.

Quercus↗
PubMed2025

Resource presentation dictates genetic and phenotypic adaptation in yeast.

BACKGROUND: Environments shape adaptive trajectories of populations, often leading to adaptive parallelism in identical, and divergence in different environments. However, how does the likelihood of these possibilities change with minute changes in the environment remain unclear. RESULTS: In this study, we evolved Saccharomyces cerevisiae in environments which differed only in the manner in which the sugar source is presented to the population. In one set of populations, carbon was presented as a mixture of glucose-galactose, and in the other, as melibiose, a glucose-galactose disaccharide. Since the two environments differed in how the two monosaccharides are packaged, we call these environments 'synonymous'. Our results show that even subtle environmental differences can lead to differing phenotypic responses between the two sets of evolved populations. However, despite different adaptive responses, pleiotropic effects of adaptation are largely predictable. We also show that distinct genomic targets of adaptation between the two sets of evolved populations are functionally convergent. CONCLUSION: This study highlights how subtle environmental differences dictate phenotypic and genetic adaptation of populations. Additionally, these results also suggest the predictive potential of ancestor's fitness in understanding pleiotropic responses. Our work underscores the importance of studying more such environments to understand the generality of adaptive responses in populations.

Saccharomyces cerevisiae↗
PubMed2006

An adaptive test for a subset of coefficients in a multivariate regression model.

An adaptive multivariate test is proposed for a subset of regression coefficients in a linear model. This adaptive method uses the studentized deleted residuals to calculate an appropriate weight for each observation. The weights are then used to compute Wilk's lambda for the weighted model. The adaptive test is performed by permuting the independent variables corresponding to those parameters that are assumed to equal zero in the null hypothesis. The permuted variables are then weighted to obtain a permutation test statistic that is used to estimate the p-value. An example is presented of a multivariate regression that uses systolic and diastolic blood pressure as dependent variables with age and body mass index as independent variables. The simulation results show that the adaptive test maintains its size for the three multivariate error distributions that were used in the study. For normal error models the power of the adaptive test nearly equaled that of the non-adaptive test. For models that used non-normal errors the adaptive test was considerably more powerful than the traditional non-adaptive test.

Age Factors↗
PubMed2006

Evidence for adaptive selection acting on the tRNA and rRNA genes of human mitochondrial DNA.

In order to identify putative adaptive human mitochondrial DNA (mtDNA), transfer RNA (tRNA), and ribosomal RNA (rRNA) variants, we assembled a sequential mutational tree from 2,460 human mtDNA coding sequences, thus providing the relative age of all mtDNA sequence variants. Deleterious mutations affect evolutionarily conserved nucleotides and have been eliminated from the older internal branches of the tree by purifying selection, while beneficial mutations also alter conserved nucleotides but have been enriched in the internal branches of the tree by adaptive selection. Neutral polymorphisms alter poorly conserved nucleotides and are distributed throughout the tree. Stem nucleotides are more constrained than loop nucleotides. The functional importance of both types of nucleotide variants was assessed by comparison to the average evolutionary conservation index (CI) of all known pathogenic tRNA mutations, thus permitting discrimination between internal branch neutral and adaptive tRNA variants. This revealed that 19% of the stem and 13% of the loop internal branch tRNA variants were potentially adaptive. Since few pathogenic rRNA mutations are known, evidence for adaptive rRNA variation was revealed by higher stem to loop variant ratios and elevated CIs in the internal branches vs. external branches. Moreover, variants among stem noncanonical apposition bases predominantly created new Watson-Crick (WC) base pairs, thus also suggesting adaptive selection. Among the putative adaptive tRNA and rRNA polymorphisms, a number were found to occur at the base of the branches of the tree, to have recurred multiple times, and to be associated with altered human phenotypes. Therefore, a significant portion of ancient tRNA and rRNA polymorphisms appear to have been adaptive, and these are affecting human health today.

Animals↗
PubMed2003

A cleavable adapter to reduce nonspecific cytotoxicity of recombinant immunotoxins.

One of the problems associated with the administration of immunotoxins is hypersensitivity reaction such as vascular leak syndrome. This may be prevented by decreasing the plasma half-life. To improve immunotoxins with respect to reduced side effects, we have previously described the development of a cleavable adapter. This adapter links the toxic moiety and ligand that are usually directly coupled. In our study, the cytotoxicity of saporin linked either directly or via the adapter to epidermal growth factor (EGF) was evaluated in vitro. The immunotoxins exhibited similar cytotoxic activity towards A-431 and HER14 cells (IC(50) < 10 nM). The supernatant from 6 hr cultures of HER14 cells incubated in the presence of the adapter-containing immunotoxin exhibited a significantly reduced cytotoxicity as compared to the directly coupled immunotoxin. Western blotting revealed that the adapter was cleaved, thus supporting our proposal that cleavable adapters may reduce nonspecific effects. A similar reduced half-life was detected in platelet-poor plasma. In contrast MCF-7 cells remain unaffected by the immunotoxins. This was shown to be due to the absence of detectable EGF-receptor in comparison to A-431 and HER14 cells as determined by Western blotting. Furthermore, we could show that the adapter does not exert an effect on the N-glycosidase activity of saporin. These results suggest that the use of cleavable adapters may be a useful tool in immunotoxins for reducing the killing of surrounding noncancerous cells due to nonspecific binding.

Adenine↗