Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “FUNGI”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 109 records · Page 6Linked to original sources
PubMed2004

Airborne viable, non-viable, and allergenic fungi in a rural agricultural area of India: a 2-year study at five outdoor sampling stations.

The information on airborne allergenic fungal flora in rural agricultural areas is largely lacking. Adequate information is not available to the bioaerosol researchers regarding the choice of single versus multiple sampling stations for the monitoring of both viable and non-viable airborne fungi. There is no long-term study estimating the ratios of viable and non-viable fungi in the air and earlier studies did not focus on the fractions of airborne allergenic fungi with respect to the total airborne fungal load. To fill these knowledge gaps, volumetric paired assessments of airborne viable and non-viable fungi were performed in five outdoor sampling stations during two consecutive years in a rural agricultural area of India. Samples were collected at 10-day intervals by the Burkard Personal Slide Sampler and the Andersen Two-Stage Viable Sampler. The data on the concentrations of total and individual fungal types from five stations and 2 different years were analyzed and compared by statistical methods. The allergenicity of the prevalent airborne viable fungi was estimated by the skin-prick tests of >100 rural allergy patients using the antigenic fungal extracts from isolates collected with the Andersen sampler. The ranges of total fungal spore concentration were 82-2365 spores per cubic meter of air (spores/m3) in the first sampling year and 156-2022 spores/m3 in the second sampling year. The concentration ranges of viable fungi were 72-1796 colony-forming units per cubic meter of air (CFU/m3) in the first sampling year and 155-1256 CFU/m3 in the second sampling year. No statistically significant difference was observed between the total spore data of the 2 years, however, the data between five stations showed a significant difference (P<0.0001). No statistically significant difference existed between stations and years with respect to the concentration of viable fungi. When the data of individual allergenic fungal concentrations were compared between stations and years, no statistically significant difference was observed in all cases except for Aspergillus japonicus and Rhizopus nigricans, which showed significant difference in case of stations and years, respectively. The ratios between the total fungal spores collected by the Burkard sampler and the viable fungi collected by the Andersen sampler from all sampling stations ranged between 0.29 and 7.61. The antigenic extracts of eight prevalent viable airborne fungi (A. flavus, A. japonicus, A. fumigatus, Alternaria alternata, Cladosporium cladosporioides, Curvularia pallescens, Fusarium roseum, and R. nigricans) demonstrated >60% positive reactions in the skin prick test. These selected allergenic fungi collectively represented 31.7-63.2% of the total airborne viable fungi in different stations. The study concluded that: (i) a rich fungal airspora existed in the rural study area, (ii) to achieve representative information on the total airborne fungal spores of an area, the monitoring in multiple sampling stations is preferable over a single sampling station; for viable fungi, however, one station can be considered, (iii) the percentage of airborne fungal viability is higher in rural agricultural areas, and (iv) approximately 52% of the viable airborne fungi in the rural study area were allergenic.

Agriculture↗
PubMed2006

Control of gastrointestinal nematodes in goats on pastures in South Africa using nematophagous fungi Duddingtonia flagrans and selective anthelmintic treatments.

The effectiveness of selective anthelmintic treatments and use of nematophagous fungi Duddingtonia flagrans in reducing levels of gastrointestinal nematodes in goats was investigated at Onderstepoort, South Africa. Nineteen (19) naturally infected indigenous male goats, aged 10 months, were separated into four groups and grazed in separate previously ungrazed paddocks for two worm seasons (February 2002-March 2003). Two groups of goats were fed D. flagrans chlamydospores daily and two groups did not receive fungi. The FAMACHA system was used to determine which goats required anthelmintic treatments. Twice as many goats in the no-fungi fed group required treatments as compared with the fungi fed group. Mean FAMACHA scores in the no-fungi fed group were higher during most of the sampling occasions compared to the group fed fungi, but the difference was not significant. The group-mean faecal egg counts and PCV% were comparable between the two treatment groups throughout the study. Haemonchus was the predominant parasite genus in composite group faecal cultures. Group-mean body weights and body condition scores were higher for the no-fungi fed group from May 2002 up to the end of the study, though statistical differences were not significant. Mean worm burdens indicated that the most abundant species infecting animals were Haemonchus contortus and Trichostrongylus spp. and were higher in the fungi fed group. More animals required individual anthelmintic treatments in the no-fungi fed group. The requirement for extra treatments in the no-fungi fed group must, however, be considered against the financial cost of the fungi, the requirement of daily feeding of the fungi, the lower performance and higher worm burdens in the fungi fed group.

Animals↗
PubMed2006

Loss of the flagellum happened only once in the fungal lineage: phylogenetic structure of kingdom Fungi inferred from RNA polymerase II subunit genes.

BACKGROUND: At present, there is not a widely accepted consensus view regarding the phylogenetic structure of kingdom Fungi although two major phyla, Ascomycota and Basidiomycota, are clearly delineated. Regarding the lower fungi, Zygomycota and Chytridiomycota, a variety of proposals have been advanced. Microsporidia may or may not be fungi; the Glomales (vesicular-arbuscular mycorrhizal fungi) may or may not constitute a fifth fungal phylum, and the loss of the flagellum may have occurred either once or multiple times during fungal evolution. All of these issues are capable of being resolved by a molecular phylogenetic analysis which achieves strong statistical support for major branches. To date, no fungal phylogeny based upon molecular characters has satisfied this criterion. RESULTS: Using the translated amino acid sequences of the RPB1 and RPB2 genes, we have inferred a fungal phylogeny that consists largely of well-supported monophyletic phyla. Our major results, each with significant statistical support, are: (1) Microsporidia are sister to kingdom Fungi and are not members of Zygomycota; that is, Microsporidia and fungi originated from a common ancestor. (2) Chytridiomycota, the only fungal phylum having a developmental stage with a flagellum, is paraphyletic and is the basal lineage. (3) Zygomycota is monophyletic based upon sampling of Trichomycetes, Zygomycetes, and Glomales. (4) Zygomycota, Basidiomycota, and Ascomycota form a monophyletic group separate from Chytridiomycota. (5) Basidiomycota and Ascomycota are monophyletic sister groups. CONCLUSION: In general, this paper highlights the evolutionary position and significance of the lower fungi (Zygomycota and Chytridiomycota). Our results suggest that loss of the flagellum happened only once during early stages of fungal evolution; consequently, the majority of fungi, unlike plants and animals, are nonflagellated. The phylogeny we infer from gene sequences is the first one that is congruent with the widely accepted morphology-based classification of Fungi. We find that, contrary to what has been published elsewhere, the four morphologically defined phyla (Ascomycota, Basidiomycota, Zygomycota and Chytridiomycota) do not overlap with one another. Microsporidia are not included within kingdom Fungi; rather they are a sister-group to the Fungi. Our study demonstrates the applicability of protein sequences from large, slowly-evolving genes to the derivation of well-resolved and highly supported phylogenies across long evolutionary distances.

Amino Acid Sequence↗
PubMed1990

Role of rumen fungi in fiber degradation.

Anaerobic fungi inhabit the rumen and actively degrade plant cell walls. Rumen fungi produce high levels of cellulases and hemicellulases and are particularly proficient in producing xylanases. These enzymes are regulated by substrate (especially soluble sugars) available to the organisms. Fungi degrade unlignified (i.e., no histochemical reaction for phenolics) plant walls totally, indicating that enzymes are able to hydrolyze or solubilize the entire plant wall. These organisms are better able to colonize and degrade the lignin-containing tissues than are bacteria; phenolics are solubilized but not metabolized from the plant wall by fungi. Anaerobic fungi are unique among rumen microorganisms in that they penetrate the cuticle. Residues after incubation with fungi are physically weaker than those incubated with whole rumen fluid or with rumen bacteria, suggesting that fungi could alter the fibrous residue for easier mastication by the animal. Data indicate that cocultures of anaerobic fungi with methanogenic bacteria stimulate cellulose degradation; other data suggest that fungi are inhibited by certain rumen microorganisms. The interaction of rumen fungi with other organisms in relation to fiber degradation in the rumen requires additional study. Rumen fungi have the potential to degrade the more recalcitrant plant walls in forages, but this potential is not always reached in the rumen.

Anaerobiosis↗
PubMed2004

[Interactions between fungal-feeding nematodes and fungi and their effects on soil nitrogen mineralization].

A species of fungal-feeding nematodes (Aphelenchus avenae) and two species of fungi (Micheli corticolus and Moniliaceae sp.) were isolated from an alluvial soil planted with paddy-rice and wheat in subtropical region. In order to approach their interactions and effects on soil nitrogen mineralization, a gnotobiotic microcosm experiment was carried out with four treatments, i.e., 1) soil + fungi-I (M. corticolus), 2) soil + fungi I + Aphelenchus avenae, 3) soil + fungi II (Moniliaceae sp.), and 4) soil + fungi II + Aphelenchus avenae at 22 degrees C for 25 days. The results showed that the individuals of nematode and fungi were increased simultaneously, suggesting that the inoculation of A. avenae stimulated the growth of fungi. The fungal-feeding nematode increased during the initial 20 days of incubation and then decreased slowly, and the individuals of the nematode that fed on Moniliaceae sp. (II) were higher than those fed on M. corticolus (I) (P<0.01). In the first 12 days of incubation, the population of Moniliaceae sp. (II) increased 2.5-3.5 times, while that of M. corticolus (I) increased slower but caught up after the 12th day, and the density reached 5.0-5.7 times higher than the corresponding treatments with only fungi inoculation. The interactions encouraged the soil nitrogen mineralization of all four treatments, as compared with the control. Comparing the treatments with and without fungal-feeding nematode inoculation, the treatments with fungal-feeding nematode had a higher content of soil NH4+-N than those with only fungi inoculations, which indicated that nematode had a greater effect on soil nitrogen mineralization than fungi. As for the two species of fungi, M. corticolus (I) had a greater effect on soil nitrogen mineralization than Moniliaceae sp. (II). It was observed, however, that the nitrification rate declined as compared with the control.

Animals↗
PubMed2003

Indigenous and introduced arbuscular mycorrhizal fungi contribute to plant growth in two agricultural soils from south-western Australia.

Arbuscular mycorrhizal (AM) fungi occur in all agricultural soils but it is not easy to assess the contribution they make to plant growth under field conditions. Several approaches have been used to investigate this, including the comparison of plant growth in the presence or absence of naturally occurring AM fungi following soil fumigation or application of fungicides. However, treatments such as these may change soil characteristics other than factors directly involving AM fungi and lead to difficulties in identifying the reason for changes in plant growth. In a glasshouse experiment, we assessed the contribution of indigenous AM fungi to growth of subterranean clover in undisturbed cores of soil from two agricultural field sites (a cropped agricultural field at South Carrabin and a low input pasture at Westdale). We used the approach of estimating the benefit of AM fungi by comparing the curvature coefficients (C) of the Mitscherlich equation for subterranean clover grown in untreated field soil, in field soil into which inoculum of Glomus invermaium was added and in soil fumigated with methyl bromide. It was only possible to estimate the benefit of mycorrhizas using this approach for one soil (Westdale) because it was the only soil for which a Mitscherlich response to the application of a range of P levels was obtained. The mycorrhizal benefit (C of mycorrhizal vs. non-mycorrhizal plants or C of inoculated vs. uninoculated plants) of the indigenous fungi corresponded with a requirement for phosphate by plants that were colonised by AM fungi already present in the soil equivalent to half that required by non-mycorrhizal plants. This benefit was independent of the plant-available P in the soil. There was no additional benefit of inoculation on plant growth other than that due to increased P uptake. Indigenous AM fungi were present in both soils and colonised a high proportion of roots in both soils. There was a higher diversity of morphotypes of mycorrhizal fungi in roots of plants grown in the Westdale soil than in the South Carrabin soil that had a history of high phosphate fertilizer use in the field. Inoculation with G. invermaium did not increase the level of colonisation of roots by mycorrhizal fungi in either soil, but it replaced approximately 20% of the root length colonised by the indigenous fungi in Westdale soil at all levels of applied P. The proportion of colonised root length replaced by G. invermaium in South Carrabin soil varied with the level of application of P to the soil; it was higher at intermediate levels of recently added soil P.

Medicago↗
PubMed2004

Airborne fungi in the homes of children with asthma in low-income urban communities: The Inner-City Asthma Study.

BACKGROUND: Despite growing evidence of the importance of exposure to fungi as an environmental risk factor for asthma, few data have been reported on the exposure to airborne fungi of asthmatic children living in US inner cities. OBJECTIVE: We sought to examine the spectrum and concentration of fungi in the air inside and outside of the homes of mold-sensitive children with asthma living in US cities. We also analyzed the relationship of the concentration of fungi in indoor air to home characteristics. METHODS: We performed a home environmental survey and measured the concentrations of culturable airborne fungi inside and outside the homes of 414 mold-sensitive children with asthma in 7 urban communities. RESULTS: The airborne fungi encountered indoors generally paralleled those found outdoors, and the similarities between communities were more striking than the differences. Indoor fungal concentrations were correlated with outdoor concentrations measured on the same day, suggesting the need to adjust for the outdoor concentration in analyses by using the indoor concentration as an indicator of the relative moldiness of a home. The concentration of fungi in indoor air in excess of outdoor air-that is, the indoor-outdoor difference-was significantly related to home characteristics, including dampness, having a cat, and cockroach infestation. CONCLUSION: Mold-sensitive children with asthma living in urban communities across the US are exposed to airborne fungi in indoor and outdoor air. The concentrations of fungi are higher in homes with dampness problems, cockroach infestation, and cats. The indoor-outdoor difference in the concentration of airborne fungi may provide a valuable metric for investigations of the role of fungal exposure as a risk factor for asthma.

Adolescent↗
PubMed1997

Health risk assessment of fungi in home environments.

LEARNING OBJECTIVES: Reading this article will enable the readers to recognize the public health importance of fungi in the home environment. In view of the recognized impact of fungi on human health, the large population being exposed to fungi, and the large population risk for developing allergic diseases, there is a need to establish guidelines for allowable exposure to fungi based on a health risk assessment. The aim of this study was to evaluate the status of the data on the relationship between exposure to fungi in the home environment and allergic health effects with respect to the development of such guidelines. DATA SOURCES: The past 10 years of peer-reviewed literature focused on the relationships between respiratory disease and exposure to fungi in indoor environments was examined, Indexing terms included mold, fungi, allergy, asthma, and indoor environment, among others. Each study was evaluated on the following criteria: aim and design of the study, methods for assessing exposure and health effects, and data analysis. STUDY SELECTION: Nine population based studies were identified that examined the relationship between allergy and the presence of fungi in the home environment. These studies included quantitative measures of fungal presence in either air or dust. RESULTS: One or more positive associations were found between fungal levels and health outcomes in seven of the nine cross-sectional studies identified. CONCLUSIONS: Despite these positive associations it remains impossible to set guidelines for fungi in home environments based on health risk assessment. This is in part because of the cross-sectional study designs, and inconsistency and inadequate validation of the measures used to evaluate exposure and health effects. Future research designed to generate data that can be used for the development of health risk assessment based guidelines for fungi in home environments should focus on susceptible populations, and use measures that accurately represent exposure and adverse health effects.

Air Microbiology↗
PubMed2005

[Effects of environmental factors on AM fungi around steppe plant roots in Tibet Plateau].

The study on the representative steppe plant species in Tibet Plateau showed that the density of AM fungi spores in host plant rhizosphere did not correlate with the infection rate of AM fungi. The big changes in air temperature and rainfall at different altitudes played an important role in determining the growth and infection of AM fungi specific to steppe plants, and steppe type and soil texture also had obvious effects on AM fungi's growth and infection. Within a certain range, the spore density increased significantly with increasing soil pH (r = 0.5319, n = 20), but showed a declining trend with the improvement of soil organic matter (r = - 0.1973, n = 20). In contrast, the infection rates of AM fungi to host plants were to some extent negatively and positively correlated with soil pH and soil organic matter, respectively. Phosphorus (P) enrichment in soil environment led to the inhibition of the reproduction and infection of AM fungi. The suitable soil pH, OM and Olsen P contents for the growth and reproduction of AM fungi ranged from 8.0-8.7, 3.8-4.8 g.kg(-l) and 7.8-10.1 mg.kg(-1), respectively. Moderate and serious degradation of steppe (especially the serious degradation) had negative or detrimental impacts on the reproduction and infection of AM fungi. Reasonable grazing was helpful to the conservation of critical species of AM fungi. AM fungi also showed a relatively high infection rate on the roots of sedge species such as Carex praecpara, Kobresia humilis and Cyperus compressus.

Altitude↗
PubMed1996

Effect of nematode-trapping fungi on an entomopathogenic nematode originating from the same field site in California.

We determined whether nematode-trapping fungi may influence the dynamics of a coastal shrub community. The food chain interactions in the shrub community involve the dominant plant species, its major insect herbivore, and an entomopathogenic nematode, Heterorhabditis hepialus. Of the 12 nematode-trapping fungi previously isolated from soils at the study site, 5 were selected for this study. Arthrobotrys oligospora, Geniculifera paucispora, Monacrosporium eudermatum, and Monacrosporium cionopagum efficiently trapped and colonized H. hepialus on agar; in contrast Nematoctonus concurrens trapped but did not infect or colonize the nematode on agar. To determine whether these fungi can suppress H. hepialus in soil, we added the fungi in the form of fungal-colonized nematodes to pasteurized (2 hr at 62 degrees C) and raw (nontreated) soil from the study site. Suppression was measured by comparing nematode invasion into a wax moth larva in fungus-treated and untreated soil in vials at 20 degrees C. Fungal population density in soil was estimated using dilution plating and most probable number procedures. All fungi suppressed H. hepialus if the wax moth larvae were added 4 days after the nematodes. Suppression ranged between 37 and 54% and did not differ among fungi. Suppression was usually greater in raw than in pasteurized soil. Raw soil contained a constant background of nematode-trapping fungi, and A. oligospora was the most common among these; no background was detected in pasteurized soil. The presence of background fungi in raw soil may explain the higher suppression in raw than in pasteurized soil. Fungal propagule densities in our laboratory experiments were similar to those observed in the field, suggesting that nematode-trapping fungi may influence the dynamics of the plant, insect herbivore, and entomopathogenic nematode in the coastal ecosystem.

Animals↗
PubMed1989

Biology of gut anaerobic fungi.

The obligately anaerobic nature of the gut indigenous fungi distinguishes them from other fungi. They are distributed widely in large herbivores, both in the foregut of ruminant-like animals and in the hindgut of hindgut fermenters. Comparative studies indicate that a capacious organ of fermentative digestion is required for their development. These fungi have been assigned to the Neocallimasticaceae, within the chytridiomycete order Spizellomycetales. The anaerobic fungi of domestic ruminants have been studied most extensively. Plant material entering the rumen is rapidly colonized by zoospores that attach and develop into thalli. The anaerobic rumen fungi have been shown to produce active cellulases and xylanases and specifically colonise and grow on plant vascular tissues. Large populations of anaerobic fungi colonise plant fragment in the rumens of cattle and sheep on high-fibre diets. The fungi actively ferment cellulose which results in formation of a mixture of products including acetate, lactate, ethanol, formate, succinate, CO2 and H2. The properties of the anaerobic fungi together with the extent of their populations on plant fragments in animals on high-fibre diets indicates a significant role for the fungi in fibre digestion.

Anaerobiosis↗
PubMed2006

Temporal variation of airborne fungi concentrations and related factors in subway stations in Seoul, Korea.

This study was performed to assess the levels of fungi concentration in subway stations in Seoul, Korea, and to investigate factors contributing to these concentrations. Ninety air samples were collected hourly over the course of a day from five different subway stations. In addition, five settled dust samples and 12 stagnant water samples were collected to investigate these as potential sources of fungi contamination. The number of passengers and frequency of passing trains were also determined during the sampling periods, as they were considered potential factors influencing the airborne fungi concentrations at a given time during the day. The airborne fungi concentrations, as a function of time, were log-normally distributed. The airborne fungi concentrations measured during the morning and evening commute hours (during which the number of passengers and frequency of passing trains was highest) were significantly higher than those measured during non-commute hours. High concentrations of fungi were found in the settled dust samples, suggesting that the settled dust may have been the main source of airborne fungi concentration. The air movement generated mainly by passengers and additionally by trains might have played a role in suspending the fungi from the settled dust. It was also found that stagnant water might be a potential source of airborne fungi.

Air Microbiology↗
PubMed1997

Infestation of sheep dung by nematophagous fungi and implications for the control of free-living stages of gastro-intestinal nematodes.

A field trial was conducted to assess the rate at which dung becomes infested by fungi which parasitise nematodes (nematophagous fungi) after deposition. Sheep dung was placed on field plots of bare ground, ryegrass (Lolium perenne), browntop (Agrostis capillaris) and white clover (Trifolium repens) in summer (February) and autumn (April), and subsamples were examined at intervals for the presence of nematophagous fungi. Nematophagous fungi occurred in 71% of 129 samples recovered in February and 57% of 58 samples recovered in April. Arthrobotrys oligospora, Monacrosporium candidum and Nematoctonus spp. were the most frequently isolated nematode-trapping fungi in both seasons. The endoparasitic nematophagous fungus Harposporium leptospira also occurred frequently in dung deposited in February, but not April. Fungi entered dung quickly, with 83% and 58% of dung samples containing nematophagous fungi at 3 days after deposition in February and April, respectively. The percentage of dung infested by nematophagous fungi on plots of bare ground, ryegrass, white clover and browntop was 76%, 75%, 61% and 55%, respectively. Results suggest that a number of species of nematophagous fungi are able to enter dung soon after deposition on a variety of types of ground cover.

Animals↗
PubMed2004

Metabolite profiling of fungi and yeast: from phenotype to metabolome by MS and informatics.

Filamentous fungi and yeast from the genera Saccharomyces, Penicillium, Aspergillus, and Fusarium are well known for their impact on our life as pathogens, involved in food spoilage by degradation or toxin contamination, and also for their wide use in biotechnology for the production of beverages, chemicals, pharmaceuticals, and enzymes. The genomes of these eukaryotic micro-organisms range from about 6000 genes in yeasts (S. cerevisiae) to more than 10,000 genes in filamentous fungi (Aspergillus sp.). Yeast and filamentous fungi are expected to share much of their primary metabolism; therefore much understanding of the central metabolism and regulation in less-studied filamentous fungi can be learned from comparative metabolite profiling and metabolomics of yeast and filamentous fungi. Filamentous fungi also have a very active and diverse secondary metabolism in which many of the additional genes present in fungi, compared with yeast, are likely to be involved. Although the 'blueprint' of a given organism is represented by the genome, its behaviour is expressed as its phenotype, i.e. growth characteristics, cell differentiation, response to the environment, the production of secondary metabolites and enzymes. Therefore the profile of (secondary) metabolites--fungal chemodiversity--is important for functional genomics and in the search for new compounds that may serve as biotechnology products. Fungal chemodiversity is, however, equally efficient for identification and classification of fungi, and hence a powerful tool in fungal taxonomy. In this paper, the use of metabolite profiling is discussed for the identification and classification of yeasts and filamentous fungi, functional analysis or discovery by integration of high performance analytical methodology, efficient data handling techniques and core concepts of species, and intelligent screening. One very efficient approach is direct infusion Mass Spectrometry (diMS) integrated with automated data handling, but a full metabolic picture requires the combination of several different analytical techniques.

Biochemistry↗
PubMed2005

Isolation of wood-inhabiting fungi from Canadian hardwood logs.

Wood-inhabiting fungi include many molds, wood-staining fungi, and decay fungi. Most of these fungal species can result in economic losses to wood users. Studies on molds, staining fungi, and decay fungi are necessary to be able to control their growth on wood and wood products. In this study, wood-inhabiting fungi were isolated from logs of 3 major Canadian hardwood species: sugar maple, white birch, and yellow birch. Two media were used for isolation. From these 3 wood species, a total of 1198 fungal cultures were obtained from summer- and winter-harvested logs in dry storage and under water sprinkling. The results showed that most fungal species were not host specific and affected all of the wood species tested. Frequently isolated molds were Alternaria alternata, Trichoderma species, and Mucor/Rhizopus (Zygomycota) species, frequently isolated staining fungi were Ophiostoma piceae and Ophiostoma piliferum, a frequently isolated bark saprophyte was Nectria cinnabarina, and frequently isolated decay fungi were taxa of the phylum Basidiomycota. More fungal species were isolated from summer-harvested logs than from winter-harvested logs. Fewer fungal cultures, especially decay fungi, were isolated from logs in early storage than from logs in late storage.

Acer↗
PubMed2006

Role of phyllosphere fungi of forest trees in the development of decomposer fungal communities and decomposition processes of leaf litter.

The ecology of endophytic and epiphytic phyllosphere fungi of forest trees is reviewed with special emphasis on the development of decomposer fungal communities and decomposition processes of leaf litter. A total of 41 genera of phyllosphere fungi have been reported to occur on leaf litter of tree species in 19 genera. The relative proportion of phyllosphere fungi in decomposer fungal communities ranges from 2% to 100%. Phyllosphere fungi generally disappear in the early stages of decomposition, although a few species persist until the late stages. Phyllosphere fungi have the ability to utilize various organic compounds as carbon sources, and the marked decomposing ability is associated with ligninolytic activity. The role of phyllosphere fungi in the decomposition of soluble components during the early stages is relatively small in spite of their frequent occurrence. Recently, the roles of phyllosphere fungi in the decomposition of structural components have been documented with reference to lignin and cellulose decomposition, nutrient dynamics, and accumulation and decomposition of soil organic matter. It is clear from this review that several of the common phyllosphere fungi of forest trees are primarily saprobic, being specifically adapted to colonize and utilize dead host tissue, and that some phyllosphere fungi with marked abilities to decompose litter components play important roles in decomposition of structural components, nutrient dynamics, and soil organic matter accumulation.

Ecosystem↗
PubMed2006

Interactions of bacteria and fungi on decomposing litter: differential extracellular enzyme activities.

Fungi and bacteria are key agents in plant litter decomposition in freshwater ecosystems. However, the specific roles of these two groups and their interactions during the decomposition process are unclear. We compared the growth and patterns of degradative enzymes expressed by communities of bacteria and fungi grown separately and in coexistence on Phragmites leaves. The two groups displayed both synergistic and antagonistic interactions. Bacteria grew better together with fungi than alone. In addition, there was a negative effect of bacteria on fungi, which appeared to be caused by suppression of fungal growth and biomass accrual rather than specifically affecting enzyme activity. Fungi growing alone had a high capacity for the decomposition of plant polymers such as lignin, cellulose, and hemicellulose. In contrast, enzyme activities were in general low when bacteria grew alone, and the activity of key enzymes in the degradation of lignin and cellulose (phenol oxidase and cellobiohydrolase) was undetectable in the bacteria-only treatment. Still, biomass-specific activities of most enzymes were higher in bacteria than in fungi. The low total activity and growth of bacteria in the absence of fungi in spite of apparent high enzymatic efficiency during the degradation of many substrates suggest that fungi provide the bacteria with resources that the bacteria were not able to acquire on their own, most probably intermediate decomposition products released by fungi that could be used by bacteria.

Bacteria↗
PubMed1994

Pollutant degradation by white rot fungi.

The white rot fungi technology is very different from other more well-established methods of bioremediation (e.g., bacterial systems). The differences are primarily due to the mechanisms discussed previously. The unusual mechanisms used by the fungi provide them with several advantages for pollutant degradation, but the complexity of these mechanisms has also made the technology slow to emerge as a viable method of bioremediation. One distinct advantage that white rot fungi have over bacterial systems is that they do not require preconditioning to a particular pollutant. Bacteria must be preexposed to a pollutant to allow the enzymes that degrade the pollutant to be induced. The pollutant must also be present in a significant concentration, otherwise induction of enzyme synthesis will not occur. Therefore, there is a finite level to which pollutants can be degraded by bacteria. In contrast, the degradative enzymes of white rot fungi are induced by nutrient limitation. Thus, cultivate the fungus on a nutrient that is limited in something, and the degradative process will be initiated. Also, because the induction of the lignin-degrading system is not dependent on the chemical, pollutants are degraded to near-nondetectable levels by white rot fungi. Another unique feature of pollutant degradation by white rot fungi involves kinetics. The process of chemical conversion by these fungi occurs via a free-radical process, and thus the degradation of chemicals often follows pseudo-first-order kinetics. In fact, in several studies, it has been found that the rate of mineralization or disappearance of a pollutant is proportional to the concentration of the pollutant. This makes the time required to achieve decontamination more important than the rate of degradation. Because the metabolism of chemicals by bacteria involves mostly enzymatic conversions, pollutant degradation often follows Michaelis-Menton-type kinetics. Therefore, Km values of various degradative enzymes with respect to the pollutant must be considered when using bacteria for bioremediation. Considering this, the solubility of a pollutant or a mixture of pollutants might also present a problem for bacterial degradation. In contrast, using a nonspecific free-radical-based mechanism, the fungi are able to degrade insoluble complex mixtures of pollutants, such as creosote (Aust and Bumpus 1989) and Arochlor (Bumpus and Aust 1987b). Inexpensive nutrient sources, such as sawdust, wood chips, surplus grains, and agricultural wastes, can be used to effectively cultivate white rot fungi.(ABSTRACT TRUNCATED AT 400 WORDS)

Basidiomycota↗