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Evapotranspiration under advective conditions.

Arid and semi-arid regions are heterogeneous landscapes in which irrigated fields are surrounded by arid areas. The advection of sensible heat flux from dry surfaces is a significant source of energy that has to be taken into consideration when evaluating the evaporation from crops growing in these areas. The basic requirement of most of the common methods for estimating evapotranspiration [Bowen ratio, aerodynamic and Penman-Monteith (PM) equation] is that the horizontal fluxes of sensible and latent heat are negligible when compared to the corresponding vertical fluxes. We carried out measurements above an irrigated tomato field in a desert area. Latent and sensible heat fluxes were measured using a four-level Bowen machine with aspirated psychrometers. Our results indicate that under advective conditions only measurements carried out in the lowest layer are satisfactory for the estimation of latent heat fluxes and that the use of the PM equation with an appropriately parameterized canopy resistance may be preferable.

Air Movements↗

Predicting the onset of net carbon uptake by deciduous forests with soil temperature and climate data: a synthesis of FLUXNET data.

We tested the hypothesis that the date of the onset of net carbon uptake by temperate deciduous forest canopies corresponds with the time when the mean daily soil temperature equals the mean annual air temperature. The hypothesis was tested using over 30 site-years of data from 12 field sites where CO(2) exchange is being measured continuously with the eddy covariance method. The sites spanned the geographic range of Europe, North America and Asia and spanned a climate space of 16 degrees C in mean annual temperature. The tested phenology rule was robust and worked well over a 75 day range of the initiation of carbon uptake, starting as early as day 88 near Ione, California to as late as day 147 near Takayama, Japan. Overall, we observed that 64% of variance in the timing when net carbon uptake started was explained by the date when soil temperature matched the mean annual air temperature. We also observed a strong correlation between mean annual air temperature and the day that a deciduous forest starts to be a carbon sink. Consequently we are able to provide a simple phenological rule that can be implemented in regional carbon balance models and be assessed with soil and temperature outputs produced by climate and weather models.

Air↗

Phenophases alter the soil respiration-temperature relationship in an oak-dominated forest.

Soil respiration (SR) represents a major component of forest ecosystem respiration and is influenced seasonally by environmental factors such as temperature, soil moisture, root respiration, and litter fall. Changes in these environmental factors correspond with shifts in plant phenology. In this study, we examined the relationship between canopy phenophases (pre-growth, growth, pre-dormancy, and dormancy) and SR sensitivity to changes in soil temperature (T(S)). SR was measured 53 times over 550 days within an oak forest in northwest Ohio, USA. Annual estimates of SR were calculated with a Q(10) model based on T(S) on a phenological (PT), or annual timescale (AT), or T(S) and soil volumetric water content (VWC) on a phenological (PTM) or annual (ATM) timescale. We found significant (p<0.01) difference in apparent Q(10) from year 2004 (1.23) and year 2005 (2.76) during the growth phenophase. Accounting for moisture-sensitivity increased model performance compared to temperature-only models: the error was -17% for the ATM model and -6% for the PTM model. The annual models consistently underestimated SR in summer and overestimated it in winter. These biases were reduced by delineating SR by tree phenophases and accounting for variation in soil moisture. Even though the bias of annual models in winter SR was small in absolute scale, the relative error was about 91%, and may thus have significant implications for regional and continental C balance estimates.

Models, Theoretical↗

Conjugative plasmid mediated inducible nickel resistance in Hafnia alvei 5-5.

Hafnia alvei 5-5, isolated from a soil-litter mixture underneath the canopy of the nickel-hyperaccumulating tree Sebertia acuminata (Sapotaceae) in New Caledonia, was found to be resistant to 30 mM Ni(2+) or 2 mM Co(2+). The 70-kb plasmid, pEJH 501, was transferred by conjugation to Escherichia coli, Serratia marcescens, and Klebsiella oxytoca. Transconjugant strains expressed inducible nickel resistance to between 5 and 17 mM Ni(2+), and cobalt resistance to 2 mM Co(2+). A 4.8-kb Sal- EcoRI fragment containing the nickel resistance determinant was subcloned, and the hybrid plasmid was found to confer a moderate level of resistance to nickel (7 mM Ni(2+)) even to E. coli. The expression of nickel resistance was inducible by exposure to nickel chloride at a concentration as low as 0.5 mM Ni(2+). By random Tn phoA'-1 insertion mutagenesis, the fragment was shown to have structural genes as well as regulatory regions for nickel resistance. Southern hybridization studies showed that the nickel-resistance determinant from pEJH501 of H. alvei 5-5 was homologous to that of pTOM9 from Alcaligenes xylosoxydans 31A.

Bacteria↗

Demography and matrix analysis on a natural Pterocarya rhoifolia population developed along a mountain stream.

The population structures and dynamics of a dominant riparian canopy species, Pterocarya rhoifolia (Juglandaceae), were analyzed based on the census data collected for the 7 years from 1989 through 1996. A study plot was established over an environmental gradient that included the lower hill-slope, river terrace, and low-level floodplain of a riparian area within a 2.8-ha cool-temperate forest stand. Spatial analyses of the demographic data showed that there were significant differences in recruitment, growth, and death processes among the three habitats. The slope and terrace habitats were the severest for the pre-reproductive stage and recruitment process, respectively. A topographically combined projection matrix was constructed for the life-history processes of the three subpopulations, which clearly revealed that the floodplain and terrace subpopulations constituted the mainland source populations, whereas the slope subpopulation was an island sink population. The whole Pterocarya population linked by seed flow showed an increase in population size (lambda=1.052). The elasticity analysis showed that the sum of the elasticity values was zero, 0.14, and 0.85 in the slope, terrace and floodplain subpopulations, respectively. This fact clearly indicates that the role of the floodplain subpopulation as a source population is six times as large as that of the terrace subpopulation.

Journal Article↗

Seasonal pattern of photosynthetic production in a subalpine evergreen herb, Pyrola incarnata.

The seasonal pattern of growth and matter production of Pyrola incarnata, an evergreen herb on the forest floor in subalpine deciduous forests, was analyzed to understand the ecological significance of evergreenness in a subalpine climate with a short growing season and low temperature. Net production was highest under favorable light conditions in spring after the disappearance of snow cover, and 68% of the annual net production was attained before the canopy tree foliage had fully expanded. Most of the photosynthetic production in this period was carried out with over-wintered leaves. This appears to be an advantage of evergreenness. New leaves and inflorescences had developed in the period. Positive net production was maintained under deteriorating light conditions during summer, when 32% of the annual net production occurred. This production was used mainly for growth of fruits and underground organs. The net production of P. incarnata during summer was much higher than that of a related species that inhabits warm-temperate regions, because of its higher photosynthetic activity rather than its lower respiratory losses. The storage of dry matter in leaves and underground organs was not conspicuous. Unlike the warm-temperate species and another subalpine species that inhabits higher altitudes, P. incarnata is not strongly dependent on its reserve matter for the development of new organs.

Biomass↗

Delayed greening, leaf expansion, and damage to sympatric Shorea species in a lowland rain forest.

The function of delayed greening in the seedlings of canopy tree species in a lowland tropical rain forest was examined in terms of its potential defensive value against herbivory. To explore the ecological and evolutionary backgrounds for delayed greening, we chose eight sympatric congeneric (Shorea) dipterocarp species that were either normal-greening or delayed-greening species. Expansion and toughening of leaves took approximately 30 days for all species, and did not differ between the normal- and delayed-greening species. The main factors that affected leaf damage during expansion were insect herbivory and fungal infection. Levels of leaf damage were significantly lower for delayed-greening species than for normal-greening species, but proportions of heavily damaged leaves and leaf abscission during expansion did not differ. In addition, no significant difference was found in damage levels on leaves (aged 1-2 months) of naturally occurring seedlings between normal- and delayed-greening species. Therefore, delayed greening may effectively reduce the level of leaf damage in young expanding leaves, but may not necessarily reduce leaf abscission and damage to mature leaves. The existence of delayed greening could not be simply explained by the phylogenetic and ecological backgrounds of the trees. Consequently, delayed greening may have a function in reducing damage during expansion, but more information (such as knowledge of the secondary metabolites involved in this phenomenon) is needed to explain fully why these species exhibit delayed greening.

Climate↗

Selfing and inbreeding depression in seeds and seedlings of Neobalanocarpus heimii (Dipterocarpaceae).

We evaluated the degree of selfing and inbreeding depression at the seed and seedling stages of a threatened tropical canopy tree, Neobalanocarpus heimii, using microsatellite markers. Selection resulted in an overall decrease in the level of surviving selfed progeny from seeds to established seedlings, indicating inbreeding depression during seedling establishment. Mean seed mass of selfed progeny was lower than that of outcrossed progeny. Since the smaller seeds suffered a fitness disadvantage at germination in N. heimii, the reduced seed mass of selfed progeny would be one of the determinants of the observed inbreeding depression during seedling establishment. High selfing rates in some mother trees could be attributed to low local densities of reproductive individuals, thus maintenance of a sufficiently high density of mature N. heimii should facilitate regeneration and conservation of the species.

Ericales↗

The breeding system of wild red ruffed lemurs (Varecia rubra): a preliminary report.

Captive studies have shown that ruffed lemurs (Varecia) have an unusual suite of reproductive traits combined with extremely high maternal reproductive costs. These traits include the bearing of litters, nesting of altricial young, and absentee parenting. To characterize the breeding system of this enigmatic lemur, reproductive traits must be contextualized in the wild. Here, I provide a preliminary report of mating and infant care in one community of wild red ruffed lemurs (Varecia rubra). Observations span a 15-month period covering two birth seasons and one mating season on the Masoala Peninsula, Madagascar. Factors that are not possible to replicate in captivity are reported, such as mating pattern, natality and mortality rates, the location of nests within the home range, and the structuring of infant care within a natural community. V. rubra at Andranobe have a fission-fusion, multifemale-multimale grouping pattern and a polygamous mating system. They do not mate monogamously or live strictly in family-based groups as suggested by previous workers. During the first 2 months of life, nests and infant stashing localities are situated within each mother's respective core area, and inhabitants of each core area within the communal home range provide care for young. As part of their absentee parenting system, infants are left in concealed, protected, and supportive spots high in the canopy, while mothers travel distantly. This practice is termed 'infant stashing'. Alloparenting appears to be an integral part of V. rubra's overall reproductive strategy in the wild, as it was performed by all age-sex classes. Among the alloparental behaviors observed were infant guarding, co-stashing, infant transport, and allonursing. Alloparenting and absentee parenting may mitigate high maternal reproductive costs. Furthermore, V. rubra may have a breeding system in which genetic partners (i.e., mating partners) do not always correspond to infant care-providers. Combined with recently available information on the behavioral ecology of wild ruffed lemurs, this preliminary report suggests directions for in-depth studies on Varecia's breeding system.

Animals↗

Foliar phenolics in sugar maple (Acer saccharum) as a potential indicator of tropospheric ozone pollution.

Tropospheric O3 has been implicated in the declining health of forest ecosystems in Europe and North America and has been shown to have negative consequences on human health. We have measured tropospheric ozone (O3) in the lower canopy through the use of passive monitors located in five woodlots along a 150 km urban-rural transect, originating in the large urban complex of Toronto, Canada. We also sampled foliage from 10 mature sugar maple trees in each woodlot and measured the concentration of a number of phenolic compounds and macronutrients. O3 concentrations were highest in the two rural woodlots, located approximately 150 km downwind of Toronto, when compared to the woodlots found within the Greater Toronto Area. Foliar concentrations of three flavonoids, avicularin, isoquercitrin, and quercitrin, were significantly greater and nitrogen concentrations significantly lower at these same rural woodlots, suggesting some physiological disruption is occurring in those sites where exposure to tropospheric O3 is greater. We suggest that foliar phenolics of sugar maple may be a biochemical indicator of tropospheric ozone exposure.

Acer↗

An exploration of the relationships between macroinvertebrate community composition and physical and chemical habitat characteristics in farm dams.

Recently, Australian interest in farm dams has focused on rates of harvest of surface waters (runoff), and the impact this has on nearby natural systems. Little research has been directed towards the role of these artificial water bodies in sustaining biological reserves within the wider ecosystem. Macroinvertebrate communities in three farm dams in the Central Tablelands of New South Wales were surveyed, and water quality variables were correlated with species richness and abundance. Community responses to habitat factors including sediment depth, stock use, vegetation and debris were also examined. Communities were described at several taxonomic levels in addition to allocation to trophic groups and primary functional feeding groups. Species richness and abundance of communities were found to vary between dams and between habitat types within dams. The extent of these differences was decreased when communities were described by either trophic status or functional feeding mechanisms. Habitats were influenced by water quality and by physical features of the habitat, with the two factors interacting to define equilibrium conditions. Localised conditions resulted in different macroinvertebrate communities. Physicochemical parameters that correlated most closely with communities included light penetration, chlorophyll-a and conductivity. Habitat factors that were most frequently linked with communities were sediment depth and canopy cover, with localised disturbances related to stock use affecting feeding groups rather than specific taxa. One of the major problems associated with increasing modification of landscapes by agriculture or urbanisation is the fragmentation of undisturbed habitats. Creation of joint aquatic and woodland habitats enhances biodiversity corridors. The recognition of the potential for farm dams as reservoirs of biodiversity and development of management practices that optimise this neglected biodiversity reserve may have much wider benefits biologically, aesthetically and productively.

Animals↗

Precision measurements from very-large scale aerial digital imagery.

Managers need measurements and resource managers need the length/width of a variety of items including that of animals, logs, streams, plant canopies, man-made objects, riparian habitat, vegetation patches and other things important in resource monitoring and land inspection. These types of measurements can now be easily and accurately obtained from very large scale aerial (VLSA) imagery having spatial resolutions as fine as 1 millimeter per pixel by using the three new software programs described here. VLSA images have small fields of view and are used for intermittent sampling across extensive landscapes. Pixel-coverage among images is influenced by small changes in airplane altitude above ground level (AGL) and orientation relative to the ground, as well as by changes in topography. These factors affect the object-to-camera distance used for image-resolution calculations. 'ImageMeasurement' offers a user-friendly interface for accounting for pixel-coverage variation among images by utilizing a database. 'LaserLOG' records and displays airplane altitude AGL measured from a high frequency laser rangefinder, and displays the vertical velocity. 'Merge' sorts through large amounts of data generated by LaserLOG and matches precise airplane altitudes with camera trigger times for input to the ImageMeasurement database. We discuss application of these tools, including error estimates. We found measurements from aerial images (collection resolution: 5-26 mm/pixel as projected on the ground) using ImageMeasurement, LaserLOG, and Merge, were accurate to centimeters with an error less than 10%. We recommend these software packages as a means for expanding the utility of aerial image data.

Algorithms↗

Deposition in boreal forests in relation to type, size, number and placement of collectors.

Open precipitation and throughfall was collected at a Norway spruce stand in Finland using funnel-type collectors and at a black spruce stand in Canada using trough-type collectors. The presence or absence of a rim on the funnel, funnel diameter (9, 14 and 20 cm) and length of sampling period (1, 2 and 4 weeks) on monthly values were evaluated at the Norway spruce stand, and the number of collectors required for defined levels of accuracy and precision of throughfall loads to be reached and the influence of the spatial arrangement of collectors on solute concentrations was studied at both stands. The presence of a rim had no significant effect on open precipitation and throughfall amounts, but did on throughfall DOC, Ca(2+), Mg(2+), K(+), Na(+) and Cl(-) ion loads. Deposition loads increased with decreasing funnel diameter; for open precipitation, this was due to increased catch efficiency while for throughfall the increase was attributed to canopy interaction and leaching of litter trapped in the collectors. Calculated monthly H(+) loads decreased and those for all other constituents increased with collection period length. Using 15 collectors at the Norway spruce stand would allow throughfall loads to be determined to within 20% of the true mean weekly value with a confidence level of 95% for most solute, but not for NH(4) (+)-N, NO(3) (-)-N, Mg(2+) and SO(4) (2-)-S. Using 15 trough collectors, the same confidence level at the more heterogeneous black spruce stand would only be achieved for H(+), Cl(-), DOC and SO(4) (2-)-S loads. In both stands, using either random or systematic placements of throughfall collectors gave similar results.

Ecosystem↗

Controls on mercury and methylmercury deposition for two watersheds in Acadia National Park, Maine.

Throughfall and bulk precipitation samples were collected for two watersheds at Acadia National Park, Maine, from 3 May to 16 November 2000, to determine which landscape factors affected mercury (Hg) deposition. One of these watersheds, Cadillac Brook, burned in 1947, providing a natural experimental design to study the effects of forest type on deposition to forested watersheds. Sites that face southwest received the highest Hg deposition, which may be due to the interception of cross-continental movement of contaminated air masses. Sites covered with softwood vegetation also received higher Hg deposition than other vegetation types because of the higher scavenging efficiency of the canopy structure. Methyl mercury (MeHg) deposition was not affected by these factors. Hg deposition, as bulk precipitation and throughfall was lower in Cadillac Brook watershed (burned) than in Hadlock Brook watershed (unburned) because of vegetation type and watershed aspect. Hg and MeHg inputs were weighted by season and vegetation type because these two factors had the most influence on deposition. Hg volatilization was not determined. The total Hg deposition via throughfall and bulk precipitation was 9.4 microg/m(2)/year in Cadillac Brook watershed and 10.2 microg/m(2)/year in Hadlock Brook watershed. The total MeHg deposition via throughfall and bulk precipitation was 0.05 microg/m(2)/year in Cadillac Brook watershed and 0.10 microg/m(2)/year in Hadlock Brook watershed.

Ecosystem↗

Variation in birch (Betula pendula) shoot secondary chemistry due to genotype, environment, and ontogeny.

Plant secondary chemistry is determined by both genetic and environmental factors, and large intraspecific variation in secondary chemistry has frequently been reported. The heritability of specific tree secondary metabolites is, however, mostly unknown. We tested the effect of plant genotype, environment, and ontogeny on the variation in shoot secondary chemistry of juvenile and mature European white birches (Betula pendula). Phenolic compounds and triterpenoids were analyzed in 30 naturally regenerated 20-year-old parental trees and micropropagated plantlets that originated from 14 of those same parental trees, planted at four growing sites. Most of the variation for phenolic compounds was explained by differences between parental trees, whereas triterpenoids had a high variation both between parental trees and within the canopy of individual tree. The effect of ontogeny was strong for some individual compounds. In mature trees, the amount of triterpenoids was less than 1 mg/g (DW), whereas the concentration in juvenile plantlets was up to 64 mg/g (DW). Clonal plantlets and parental trees were generally quite similar in their phenolic contents, but there were significant differences for all analyzed compounds among clones. Environment had no significant effect on the accumulation of some compounds, whereas for others, a significant environmental effect and/or significant genotype by environment interaction was found. These results suggest that birch shoot secondary chemistry is under strong genetic control and that the environmental effects depend on the studied chemical trait.

Betula↗

Cassava biology and physiology.

Cassava or manioc (Manihot esculenta Crantz), a perennial shrub of the New World, currently is the sixth world food crop for more than 500 million people in tropical and sub-tropical Africa, Asia and Latin America. It is cultivated mainly by resource-limited small farmers for its starchy roots, which are used as human food either fresh when low in cyanogens or in many processed forms and products, mostly starch, flour, and for animal feed. Because of its inherent tolerance to stressful environments, where other food crops would fail, it is often considered a food-security source against famine, requiring minimal care. Under optimal environmental conditions, it compares favorably in production of energy with most other major staple food crops due to its high yield potential. Recent research at the Centro Internacional de Agricultura Tropical (CIAT) in Colombia has demonstrated the ability of cassava to assimilate carbon at very high rates under high levels of humidity, temperature and solar radiation,which correlates with productivity across all environments whether dry or humid. When grown on very poor soils under prolonged drought for more than 6 months, the crop reduce both its leaf canopy and transpiration water loss, but its attached leaves remain photosynthetically active, though at greatly reduced rates. The main physiological mechanism underlying such a remarkable tolerance to drought was rapid stomatal closure under both atmospheric and edaphic water stress, protecting the leaf against dehydration while the plant depletes available soil water slowly during long dry periods. This drought tolerance mechanism leads to high crop water use efficiency values. Although the cassava fine root system is sparse, compared to other crops, it can penetrate below 2 m soil,thus enabling the crop to exploit deep water if available. Leaves of cassava and wild Manihot possess elevated activities of the C4 enzyme PEP carboxylase but lack the leaf Kranz anatomy typical of C4 species, pointing to the need for further research on cultivated and wild Manihot to further improve its photosynthetic potential and yield,particularly under stressful environments. Moreover, a wide range in values of Km (CO2) for the C3 photosynthetic enzyme Rubisco was found among cassava cultivars indicating the possibility of selection for higher affinity to CO2, and consequently higher leaf photosynthesis. Several plant traits that may be of value in crop breeding and improvement have been identified, such as an extensive fine root system, long leaf life, strong root sink and high leaf photosynthesis. Selection of parental materials for tolerance to drought and infertile soils under representative field conditions have resulted in developing improved cultivars that have high yields in favorable environments while producing reasonable and stable yields under stress.

Adaptation, Physiological↗

Measuring photosynthetic parameters at a distance: laser induced fluorescence transient (LIFT) method for remote measurements of photosynthesis in terrestrial vegetation.

We have developed a laser induced fluorescence transient (LIFT) technique and instrumentation to remotely measure photosynthetic properties in terrestrial vegetation at a distance of up to 50 m. The LIFT method uses a 665 nm laser to project a collimated, 100 mm diameter excitation beam onto leaves of the targeted plant. Fluorescence emission at 690 nm is collected by a 250 mm reflective telescope and processed in real time to calculate the efficiency of photosynthetic light utilization, quantum efficiency of PS II, and the kinetics of photosynthetic electron transport. Operating with peak excitation power of 125 W m-2, and duty cycle of 10-50%, the instrument conforms to laser safety regulations. The LIFT instrument is controlled via an Internet connection, allowing it to operate from remote locations or platforms. Here we describe the theoretical basis of the LIFT methodology, and demonstrate its applications in remote measurements of photosynthetic properties in the canopy of cottonwood and oak trees, and in the rosette of Arabidopsis mutants.

Fluorescence↗

Associated norepinephrine loss following calcium-induced spinal paralysis.

A 10% calcium chloride solution or normal physiological saline was instilled onto the intact dorsal surface of the spinal cord via a specially constructed catheter-canopy system fixed above the T9 level in conscious rats. Within 5 min after calcium instillation rats developed flaccid paralysis of the lower limbs with sensory loss. Sensory loss was accompanied by abnormal or negative evoked potentials. Rats instilled with physiological or 10% sodium chloride remained normal. Rats were sacrificed at 1, 16 and 48 h post-calcium exposure and following full functional recovery from paralysis. Spinal cords were removed for histologic and high-performance liquid chromatography (HPLC) analysis. Histologic examination for catecholamines using SPG histofluorescence showed loss of catecholamine-containing varicosities in gray matter below calcium exposure which returned to normal levels upon sensorimotor recovery of hindlimbs about 14 days pce. Light microscopic examination of vascular permeability and general morphology of cord tissue axons and neurons remained normal in calcium and saline instilled rats. HPLC analysis of spinal cord below calcium exposure, also showed norepinephrine (NE) and 3-methoxy-4-hydroxyphenylglycol (MHPG) tissue level reductions which returned to normal upon sensorimotor recovery of paralysis about 2 weeks later. No significant changes were noted in dopamine or serotonin levels in any group. Our findings suggest an impairment of ascending and descending tract transmitter transport, specifically reflected in the noradrenergic bulbospinal pathway. The results implicate a neurofilament-microtubule disassembly in axonal cytoskeleton triggered by the sudden calcium influx.

Animals↗