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PubMed2026

Hormone priming and metabolic engineering of phytohormone crosstalk in rice under combined biotic and abiotic stresses: a multi-omics perspective for climate-resilient crop development.

Rice (Oryza sativa L.) is the caloric backbone for more than half of humanity, yet it remains one of the most vulnerable crops to the simultaneous biotic and abiotic stresses exacerbated by climate change. Phytohormone priming and the complex crosstalk networks governed by transcription factor hubs like WRKY, MYB, and NAC serve as the central adaptive mechanism for stress resilience. This review synthesizes how multi-omics integration, including spatial and single-cell transcriptomics, is resolving the molecular architecture of hormonal priming and epigenetic stress memory. We critically evaluate advanced metabolic engineering and genome-editing strategies such as CRISPR-Cas9, base/prime editing, and synthetic gene circuits that enable precision modifications to decouple stress tolerance from historical yield penalties. Furthermore, we discuss the emerging roles of microbiome-assisted priming via synthetic consortia and the application of artificial intelligence and digital twins (continuously updated computational models of crop physiology) for predictive stress management. By integrating these diverse technological pillars, we propose a systems-level roadmap for developing climate-resilient rice cultivars capable of maintaining yield stability across a volatile combinatorial stress landscape. This synthesis provides a framework for translating mechanistic hormonal insights into field-applicable cultivars to ensure global food security.

CRISPR↗
PubMed2001

Destruction of Escherichia coli O157:H7 and Salmonella enteritidis in cow manure composting.

Application of cow manure and composted manure in agricultural practice could potentially cause contamination of foodstuffs with pathogenic bacteria such as Salmonella Enteritidis and Escherichia coli O157:H7. In this study, rifampicin-resistant (RifR) E. coli O157:H7 and Salmonella Enteritidis at a level of 7 log CFU/g of raw compost feed were used to determine the effect of a bench-scale composting system on their survival. RifR E. coli O157:H7 was not detected after 72 h of composting at 45 degrees C, and RifR Salmonella Enteritidis was not detected after 48 h. The use of selective media for enrichment failed to recover in the composting samples held at 45 degrees C for 96 h. However, the pathogens showed no change in bacterial numbers when the composting system was held at room temperature. Thus, properly composted manure can be safely used in food crop production while minimizing the likelihood of microbial contamination.

Animals↗
PubMed2004

Real-time 3-dimensional fetal echocardiography with an instantaneous volume-rendered display: early description and pictorial essay.

OBJECTIVE: Random fetal motion, rapid fetal heart rates, and cumbersome processing algorithms have limited reconstructive approaches to 3-dimensional fetal cardiac imaging. Given the recent development of real-time, instantaneous volume-rendered sonographic displays of volume data, we sought to apply this technology to fetal cardiac imaging. METHODS: We obtained 1 to 6 volume data sets on each of 30 fetal hearts referred for formal fetal echocardiography. Each volume data set was acquired over 2 to 8 seconds and stored on the system's hard drive. Rendered images were subsequently processed to optimize translucency, smoothing, and orientation and cropped to reveal "surgeon's eye views" of clinically relevant anatomic structures. Qualitative comparison was made with conventional fetal echocardiography for each subject. RESULTS: Volume-rendered displays identified all major abnormalities but failed to identify small ventricular septal defects in 2 patients. Important planes and views not visualized during the actual scans were generated with minimal processing of rendered image displays. Volume-rendered displays tended to have slightly inferior image quality compared with conventional 2-dimensional images. CONCLUSIONS: Real-time 3-dimensional echocardiography with instantaneous volume-rendered displays of the fetal heart represents a new approach to fetal cardiac imaging with tremendous clinical potential.

Adult↗
PubMed2005

[Modelling pollutant loads and management alternatives in Jiulong River watershed with AnnAGNPS].

The modelling package Annualized Agricultural Nonpoint Source Model (AnnAGNPS) was used to predict pollutant loads, and simulate catchment processes and management practices in Jiulong River watershed, a medium-sized mountainous watershed in southeast of China. Four typical sub-watersheds were primarily chosen to calibrate AnnAGNPS model by data collected from storm events during the period of April to September, 2003. The model was further validated in the two biggest branches of Jiulong River watershed, i.e. West river and North river by the data regarding climate, and land using condition in 2002 - 2003. The simulation results show that annual total nitrogen load was 24.76kg/(hm2 x a) and 10.28kg/(hm2 x a) in the West river and North river, respectively, and annual total phosphorus load was 0.67 kg/(hm2 x a) and 0.40 kg/(hm2 x a) in the West river and North river, respectively. With the support of AnnAGNPS model, several management alternatives were separately simulated in the typical sub-watersheds, West river and North river. In the specific cell with cell-ID of 92 in Tianbao and Xiandu sub-watershed, after reforesting in sloping field, runoff surface, sediment yield, total nitrogen load and total phosphorus load cut down with 21.6%, 25.9%, 96% and 79.2%, respectively. In West river, with the cultivation plant changing from banana into rice, the total nitrogen, dissolved nitrogen, total phosphorus and dissolved phosphorus cut down with 23.83%, 25.44%, 9.08% and 19.84%, respectively. In North river, when removing all the hoggerys, nitrogen and dissolved nitrogen cut down with 63.54% and 76.92% , respectively.

China↗
PubMed1976

[Cultural conflicts in the management of hydrographic watersheds in the Central American isthmus].

Productivity of natural ecosystems in watersheds in the Central American Isthmus is being seriously endangered by the disproportionate increase in population, which hampers an adequate development of water and agricultural resources. The logical consequences of the lack of planning in the use of these resources are rapid degradation of the soil and high levels of environmental pollution. Among the human activities which destroy the natural ecological balance are slash burning, overgrazing and farming on lands not suited for this purpose. These activities form part of the socio-economic and cultural aspects of the region and are associated with systems of land occupancy and distribution, and with inefficient practices, such as tenant farming and share cropping. Recent apprehensions by nature-loving groups and the general public are pressing for more realistic conservation and legislative policies, and for the creation of more dynamic government agencies that would not only actively participate in the planning and utilization of natural resources, but also in the technical studies of watersheds that after the socio-cultural aspects of the central American region.

Agriculture↗
PubMed1998

Physician community involvement. Working within your area to promote better health.

How many times have you been asked to participate in a meeting, forum, or task force to address a community health issue in the last few years? Opportunities seem to crop up almost weekly as non-profit organizations acclimate to meet changing needs and health systems continue to adapt to market forces. But participating in ongoing community projects, or even attending periodic meetings, draws time away from practice and professional obligations and limits an already modest supply of personal time. Is involvement in a community collaborative effort worth the time? And, if so, what are the benefits and challenges to physicians, health systems, and communities from this type of investment?

Community Health Services↗
PubMed2003

Initial experimental results from the Laboratory Biosphere closed ecological system facility.

An initial experiment in the Laboratory Biosphere facility, Santa Fe, New Mexico, was conducted May-August 2002 using a soil-based system with light levels (at 12 h per day) of 58-mol m-2 d-1. The crop tested was soybean, cultivar Hoyt, which produced an aboveground biomass of 2510 grams. Dynamics of a number of trace gases showed that methane, nitrous oxide, carbon monoxide, and hydrogen gas had initial increases that were substantially reduced in concentration by the end of the experiment. Methane was reduced from 209 ppm to 11 ppm, and nitrous oxide from 5 ppm to 1.4 ppm in the last 40 days of the closure experiment. Ethylene was at elevated levels compared to ambient during the flowering/fruiting phase of the crop. Soil respiration from the 5.37 m2 (1.46 m3) soil component was estimated at 23.4 ppm h-1 or 1.28 g CO2 h-1 or 5.7 g CO2 m-2 d-1. Phytorespiration peaked near the time of fruiting at about 160 ppm h-1. At the height of plant growth, photosynthesis CO2 draw down was as high as 3950 ppm d-1, and averaged 265 ppm h-1 (whole day averages) during lighted hours with a range of 156-390 ppm h-1. During this period, the chamber required injections of CO2 to continue plant growth. Oxygen levels rose along with the injections of carbon dioxide. Upon several occasions, CO2 was allowed to be drawn down to severely limiting levels, bottoming at around 150 ppm. A strong positive correlation (about 0.05 ppm h-1 ppm-1 with r2 about 0.9 for the range 1000-5000 ppm) was observed between atmospheric CO2 concentration and the rate of fixation up to concentrations of around 8800 ppm CO2.

Biomass↗
PubMed2004

Developing a vitamin greenhouse for the life support system of the International Space Station and for future interplanetary missions.

In order to evaluate the effects of gravity on growing plants, we conducted ground based long-term experiments with dwarf wheat, cultivar Apogee and Chinese cabbage, cultivar Khibinskaya. The test crops had been grown in overhead position with HPS lamp below root module so gravity and light intensity gradients had been in opposite direction. Plants of the control crop grew in normal position under the same lamp. Both crops were grown on porous metallic membranes with stable -1 kPa matric potential on their surface. Results from these and other studies allowed us to examine the differences in growth and development of the plants as well as the root systems in relation to the value of the gravity force influence. Dry weight of the roots from test group was decreased in 2.5 times for wheat and in 6 times - at the Chinese cabbage, but shoot dry biomass was practically same for both test and control versions. A harvest index of the test plants increased substantially. The data shows, that development of the plants was essentially changed in microgravity. The experiments in the space greenhouse Svet aboard the Mir space station proved that it is possible to compensate the effects of weightlessness on higher plants by manipulating gradients of environmental parameters (i.e. photon flux, matric potential in the root zone, etc.). However, the average productivity of Svet concerning salad crops even in ground studies did not provide more than 14 g fresh biomass per day. This does not provide a sufficient level of supplemental nutrients to the crew of the ISS. A cylindrical design of a space plant growth chamber (SPGC) allows for maximal productivity in presence of very tight energy and volume limitations onboard the ISS and provides a number of operational advantages. Productivity from this type of SPGF with a 0.5 kW energy utilization when salad growing would provide approximately 100 g of edible biomass per day, which would almost satisfy requirements for a crew of two in vitamin C and carotene and partly vitamin B group as well as rough fiber.

Biomass↗
PubMed1994

A new method for the diagnosis of Trichomonas gallinae infection by culture.

Diagnosis of Trichomonas gallinae infection can reliably be made by the demonstration of organisms in material taken from a bird's mouth and crop. This can be examined directly or incubated in a growth medium until organisms are numerous enough to be easily found in aliquots examined with the microscope. We compared two methods of culture diagnosis of Trichomonas gallinae infection in pigeons. A commercially available kit, In-Pouch TF, proved as sensitive for this purpose as in vitro Diamond's medium, but had practical advantages over the usual in vitro system.

Animals↗
PubMed1997

Food production and nutrition for the crew during the first 2-year closure of Biosphere 2.

Biosphere 2's finite natural resources: atmosphere, plants, water, and soil, and its unique increased rate of nutrient cycling, mandated a design for the agriculture that emphasized sustainability and high productivity. The results of the initial 2-year test of the agriculture system showed that it could provide a diet that was both nutritionally adequate and pleasing to the palate of the eight-member crew from September 1991 to September 1993. The agriculture design was developed from 1985 to 1991 at the Space Biospheres research greenhouses with consulting from the Institute of Ecotechnics (London) from its experiments in New Mexico, Australia, and France and the Environmental Research Laboratory (University of Arizona). During the 2-year mission this research was continued with the close collaboration of outside scientific consultants, particularly in the area of soil management and integrated pest management. The 2000-m2 cropping area provided approximately 81% of the overall nutritional needs of the crew. Initial results showed light to be the main limiting factor and the additional electric light was added after the first 2-year mission to increase the productivity for future experiments. The diet was primarily vegetarian supplemented with daily amounts of milk, and weekly meals of meat and eggs from the system's domestic goats, pigs, and chickens. Nontoxic methods of pest and disease control were used. The main pest problems were broad mite and root knot nematode. Inedible plant material, domestic animal wastes, and human waste water were successfully processed for nutrient return to the soil. Eighty-six varieties of crops were grown in Biosphere 2. Major staple crops included rice, sweet potato, beets, banana, and papaya. The African pygmy goats were the most productive of the domestic animals producing on average 1.14 kg of milk per day. The diet averaged 2200 calories, 73 g of protein, and 32 g of fat per person per day over the 2 years. The crew had a 10-20% weight loss, mostly occurring in the first 6 months of closure, after which weights stabilized with some increase in the second year. Agriculture field management took 25% of crew time, animal care required an additional 9% and food preparation accounted for 12% of crew labor.

Agriculture↗
PubMed2025

Large-scale screening of genes responsible for silique length and seed size in Brassica Napus via pooled CRISPR library.

BACKGROUND: Enhancing rapeseed (Brassica napus, B. napus) yield is critical for ensuring global vegetable oil security. However, yield is heavily influenced by silique development and seed size, the enhancement of which is limited by scarce genetic resources. The CRISPR/Cas9 system has emerged as a powerful tool for constructing genome-wide mutant libraries, even in polyploid crops with complex genomes. RESULTS: The transcriptome-wide association study (TWAS) data, tissue-specific expression profiles data and reported genes were integrated to identify candidate genes regulating silique development and seed size. We constructed a sgRNA library targeting these genes and generated a CRISPR/Cas9 editing mutant library through genetic transformation. Specifically, 6124 sgRNAs were designed for 1739 candidate genes with ≦ 4 orthologues. 681 T0 plants were obtained through genetic transformation, which harbor 453 sgRNAs. Of 408 T0 plants analyzed, 151 (37.00%) exhibited successful gene editing events, targeting 84 candidate genes. Ten homozygous mutant plants were isolated and preliminary phenotypic analysis was performed in mutants targeting the BnaHRDs. The results suggest that mutations in BnaHRD.A03 and BnaHRD.C03 may modulate plant height (PH), main inflorescence length (MIL), silique length (SL), effective silique number per plant (ENS), seed number per silique (SNPS), and thousand-seed weight (TSW). CONCLUSIONS: This study harnessed the CRISPR/Cas9 technology to establish a preliminary library of gene-edited mutants in B. napus, thereby laying a robust foundation for the future screening of candidate genes pertaining to silique development and seed size. Furthermore, this study provides a methodological framework for rapid functional gene discovery in B. napus through CRISPR-based approaches.

Brassica napus↗
PubMed2004

Rough set rule induction for suitability assessment.

The data that characterize an environmental system are a fundamental part of an environmental decision-support system. However, obtaining complete and consistent data sets for regional studies can be difficult. Data sets are often available only for small study areas within the region, whereas the data themselves contain uncertainty because of system complexity, differences in methodology, or data collection errors. This paper presents rough-set rule induction as one way to deal with data uncertainty while creating predictive if-then rules that generalize data values to the entire region. The approach is illustrated by determining the crop suitability of 14 crops for the agricultural soils of the Willamette River Basin, Oregon, USA. To implement this method, environmental and crop yield data were spatially related to individual soil units, forming the examples needed for the rule induction process. Next, four learning algorithms were defined by using different subsets of environmental attributes. ROSETTA, a software system for rough set analysis, was then used to generate rules using each algorithm. Cross-validation analysis showed that all crops had at least one algorithm with an accuracy rate greater than 68%. After selecting a preferred algorithm, the induced classifier was used to predict the crop suitability of each crop for the unclassified soils. The results suggest that rough set rule induction is a useful method for data generalization and suitability analysis.

Algorithms↗
PubMed1992

Some challenges in designing a lunar, Martian, or microgravity CELSS.

The design of a bioregenerative life-support system (a Controlled Ecological Life-Support System or CELSS) for long-duration stays on the moon, Mars, or in a space craft poses formidable problems in engineering and in theory. Technological (hardware) problems include: (1) Creation and control of gas composition and pressure, temperature, light, humidity, and air circulation, especially in microgravity to 1/3 xg and in the vacuum of space. Light (energy demanding), CO2 levels, and the rooting media are special problems for plants. (2) Developing specialized equipment for food preparation. (3) Equipment development for waste recycling. (4) Development of computer systems for environmental monitoring and control as well as several other functions. Problems of theory (software) include: (1) Determining crop species and cultivars (some bred especially for CELSS). (2) Optimum environments and growing and harvesting techniques for each crop. (3) Best and most efficient food-preparation techniques and required equipment. (4) Best and most efficient waste-recycling techniques and equipment. This topic includes questions about the extent of closure, resupply, and waste storage. (5) How to achieve long-term stability. (6) How to avoid catastrophic failures--and how to recover from near-catastrophic failures (for example, plant diseases). Many problems must be solved.

Biomass↗
PubMed1997

Selection of marker-free transgenic plants using the isopentenyl transferase gene.

We have developed a new plant vector system for repeated transformation (called MAT for multi-auto-transformation) in which a chimeric ipt gene, inserted into the transposable element Ac, is used as a selectable marker for transformation. Selectable marker genes conferring antibiotic or herbicide resistance, used to introduce economically valuable genes into crop plants, have three major problems: (i) the selective agents have negative effects on proliferation and differentiation of plant cells; (ii) there is uncertainty regarding the environmental impact of many selectable marker genes; (iii) it is difficult to perform recurrent transformations using the same selectable marker to pyramid desirable genes. The MAT vector system containing the ipt gene and the Ac element is designed to overcome these difficulties. When tobacco leaf segments were transformed and selected, subsequent excision of the modified Ac produced marker-free transgenic tobacco plants without sexual crosses or seed production. In addition, the chimeric ipt gene could be visually used as a selectable marker for transformation of hybrid aspen (Populus sieboldii x Populus grandidentata). The chimeric ipt gene, therefore, is an attractive alternative to the most widely used selectable marker genes. The MAT vector system provides a promising way to shorten breeding time for genetically engineered crops. This method could be particularly valuable for fruit and forest trees, for which long generation times are a more significant barrier to breeding and genetic analysis.

Journal Article↗
PubMed2002

Excision of selectable marker genes from transgenic plants.

Selectable marker genes are required to ensure the efficient genetic modification of crops. Economic incentives and safety concerns have prompted the development of several strategies (site-specific recombination, homologous recombination, transposition, and co-transformation) to eliminate these genes from the genome after they have fulfilled their purpose. Recently, chemically inducible site-specific recombinase systems have emerged as valuable tools for efficiently regulating the excision of transgenes when their expression is no longer required. The implementation of these strategies in crops and their further improvement will help to expedite widespread public acceptance of agricultural biotechnology

DNA Nucleotidyltransferases↗
PubMed2007

Comparison of wind tunnel and field experiments to measure potential deposition of fenpropimorph following volatilisation from treated crops.

The potential for short-range transport via air, i.e. volatilisation from the area of application and subsequent deposition on adjacent non-target areas, was investigated for the fungicide fenpropimorph in a wind tunnel system and under outdoor conditions in a higher-tier field study. Fenpropimorph 750 g L(-1) EC was applied post-emergence to cereal along with a reference standard lindane EC. Stainless steel containers of water were placed at different distances downwind of the application area to trap volatile residues during a study period of 24 h following application. Meteorological conditions in the wind tunnel as well as on the field were constantly monitored during the study period. The wind tunnel system was a partly standardised system on a semi-field scale, i.e. wind direction and wind speed (2 m s(-1)) were constant, but temperature and humidity varied according to the conditions outside. In the field experiment, the average wind speed over the 24 h study period was 3 m s(-1) and no rainfall occurred. Three different measuring lines were installed on the non-target area beside the treated field to cover potential variations in the wind direction. However, no significant differences were observed since the wind direction was generally constant. Fenpropimorph was detected in minor amounts of 0.01-0.05% of the applied material in the wind tunnel experiment. Even at a distance of 1 m beside the treated field, no significant deposition occurred (0.04% of applied material after 24 h). In the field, less than 0.1% of the applied fenpropimorph was detected at 0 m directly beside the treated field. At 5 m distance the deposition values were below 0.04%, and at 20 m distance about 0.01%. In general, the amounts of deposited fenpropimorph detected in the partly standardised wind tunnel system and the higher-tier field study were in good agreement.

Agriculture↗
PubMed2005

Sustainability of farmers' soil fertility management practices: a case study in the North China Plain.

To ensure regional self-sufficiency and adequate rural livelihoods in the North China Plain (NCP), tremendous efforts were made over the last two decades by the Chinese government to raise the productivity of crops, despite increasing pressure on the land caused by a growing population. Emphasis was placed on high external input use, especially for wheat, maize and cotton, ignoring the particularities and limitations of the natural resource base. This study assesses the sustainability of current soil fertility management practices on the basis of selected location-specific indicators, such as fertilizer use, soil pH, soil organic matter content, levels of nitrogen (N), phosphorus (P) and potassium (K) in the soil, and identifies determining factors of the yield and environmental impacts of inputs use. Data used for the analysis were gathered from soil tests, groundwater and chive plant tests, household surveys, and statistical yearbooks. Stepwise multiple regression analysis is applied to determine factors affecting the yields. The study revealed unbalanced use of nutrients. Organic fertilizers (manure, crop residues) and K are insufficiently applied, whereas N and P are considerably overused in comparison with recommended doses. The intensive cropping in the area using high-input technologies -particularly fertilizer- has resulted in a remarkable general enhancement of crop productivity and improvement of soil fertility over the years. The yield of wheat and maize has increased 173 and 180 kg ha(-1) annually from 1982 to 2000, respectively and soil fertility status also improved over the years and the values of the selected indicators are within the borderline for sustainability. Irrigation water, FYM application, and total labor used during the cultivation season (with the exception of cotton and chive) for production are the main factors determining the yields of four major crops under study, while popularly and overly used N did not appear to be a significant factor affecting the yield. Its overuse, however, leads to leaching of nitrate into groundwater and nitrate enrichment of vegetables. Of 20 groundwater samples, 16 showed nitrate levels between 55 and 180 mg l(-1), which exceeds recommendations for drinking water (<or=50 mg l(-1)), and 19 out of 20 chive plant samples had nitrate levels more than double the maximum permissible level of 700 mg kg(-1) which causes contamination of groundwater and vegetables. If the current methods of soil fertility management are continued, groundwater and food contamination will increase and jeopardize the sustainability of the current land use systems. Present soil fertility management practices at the farm level are not sustainable. However, there are possibilities to improve farmers' soil fertility management practices, for instance, it is necessary to recommend soil and/or plant testing to adjust fertilizer and/or manure application rates to crops to reduce excessive nutrient input, and to adopt appropriate decision support systems for efficient and sustainable management of production resources.

Agriculture↗
PubMed2000

Crop improvement in the 21st century.

Crop yields increased dramatically in the 20th century as recorded on Broadbalk or in world averages. The vast majority of that increase has occurred since the last world war and has been powered by changes in the genetic potential of the crop and in the way in which it has been managed. Nevertheless, the challenge to feed a world population that is likely to rise to 8 billion is formidable, particularly since recent analyses suggest that the rate of increase in yields of several crops may have dropped over the last decade. What are the opportunities to meet this challenge and to continue to improve the yields of our crops? Improvements in agronomy are likely to be more concerned with efficiency and elegance rather than in major breakthroughs. More sophisticated crop protection chemicals designed on the basis of vastly increased screening potentials and (at last?) possibilities of rational design will be supplemented by a battery of decision support systems to aid management choices which can be precisely implemented. Genetic improvement is the area in which to-look for the major breakthroughs. The broad potential of recombinant DNA technology will provide the possibility of both molecular analyses of crop productivity and ways in which it may be possible to improve that productivity. The goal of analysis may be approached in three ways: starting at the beginning by generating complete sequences of the plant genome; starting at the end by genetic analysis of phenotypes using genetic marker technology; or, starting in the middle, by metabolic analysis. Improvements may be obtained by re-assorting what has been achieved through enhanced breeding technologies, by randomly induced change, and by generation of totally new possibilities through biochemical engineering. Examples of all approaches will be given. The onset of genomics will provide massive amounts of information, but the success will depend on using that to improve crop phenotypes. The ability to meet the challenges of the 21st century will depend on the ability to close that 'phenotype gap'.

Biotechnology↗