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Identity of the emitter in the bacterial luciferase luminescence reaction: binding and fluorescence quantum yield studies of 5-decyl-4a-hydroxy-4a,5-dihydroriboflavin-5'-phosphate as a model.

The excited state of 4a-hydroxy-4a,5-dihydroFMN has been postulated to be the emitter in the bacterial bioluminescence reaction. However, while the bioluminescence quantum yield of the luciferase emitter is about 0.16, chemiluminescence and fluorescence quantum yields of earlier flavin models mimicking the luciferase emitter were no more than 10(-5). To further examine the proposed chemical identity of the luciferase emitter, 5-decyl-4a-hydroxy-4a,5-dihydroFMN was prepared as a new flavin model. Both the wild-type Vibrio harveyi luciferase and a catalytically active alphaC106A mutant formed complexes with the flavin model at a 1:1 molar ratio with K(d) values at 2.4 and 1.2 microM, respectively. This flavin model inhibited the activity of both luciferases, suggesting that it was bound to the enzyme active center. While the free flavin model was itself only very weakly fluorescent, its binding to either luciferase species resulted in markedly enhanced fluorescence, peaking at 440 nm. The fluorescence quantum yields of 5-decyl-4a-hydroxy-4a,5-dihydroFMN bound to wild-type and alphaC106A luciferases were 0.08 and 0.05, respectively, which are about 50% of the respective emitter bioluminescence quantum yields of these two luciferases. The present findings clearly demonstrated that the luciferase active site was suitable for marked enhancement of fluorescence of 4a-hydroxyflavin and, hence, provides a strong support to the proposed identity of 4a-hydroxy-4a,5-dihydroFMN, in its exited state, as the luciferase emitter.

Binding Sites↗

Determination of the rate and yield of B-side quinone reduction in Rhodobacter capsulatus reaction centers.

In the native purple bacterial reaction center (RC), light-driven charge separation utilizes only the A-side cofactors, with the symmetry related B-side inactive. The process is initiated by electron transfer from the excited primary donor (P*) to the A-side bacteriopheophytin (P* --> P+ H(A)-) in approximately 3 ps. This is followed by electron transfer to the A-side quinone (P+ H(A)- --> P+ Q(A)-) in approximately 200 ps, with an overall quantum yield of approximately 100%. Using nanosecond flash photolysis and RCs from the Rhodobacter capsulatus F(L181)Y/Y(M208)F/L(M212)H mutant (designated YFH), we have probed the decay pathways of the analogous B-side state P+ H(B)-. The rate of the P+ H(B)- --> ground-state charge-recombination process is found to be (3.0 +/- 0.8 ns)(-1), which is much faster than the analogous (10-20 ns)(-1) rate of P+ H(A)- --> ground state. The rate of P+ H(B)- --> P+ Q(B)- electron transfer is determined to be (3.9 +/- 0.9 ns)(-1), which is about a factor of 20 slower than the analogous A-side process P+ H(A)- --> P+ Q(A)-. The yield of P+ H(B)- --> P+ Q(B)- electron-transfer calculated from these rate constants is 44%. This value, when combined with the known 30% yield of P+ H(B)- from P in YFH RCs, gives an overall yield of 13% for B-side charge separation P* --> P+ H(B)- --> P+ Q(B)- in this mutant. We determine essentially the same value (15%) by comparing the P-bleaching amplitude at approximately 1 ms in YFH and wild-type RCs.

Kinetics↗

A recombinant lipoprotein antigen against Lyme disease expressed in E. coli: fermentor operating strategies for improved yield.

Decorin-binding lipoprotein, lpp-DBP, a bacterial surface adhesin, shows promise as a vaccine against Lyme disease. It is expressed in recombinant E. coli as an undesirable 20.5 KDa apoprotein that is subsequently lipidated in vivo to the desired 22 KDa lpp-DBP form. This study defines fermentation conditions for maximizing lpp-DBP yield. Super broth medium, a low post-induction temperature (30 degrees C), and a glucose feed based on dissolved oxygen resulted in high lpp-DBP yield and minimized apoprotein formation. Since cells lysed within 2-3 h after induction, the cell yield was maximized by growing cells to high cell density prior to induction. Compared to a glucose feed based on maintaining a constant fermentor glucose concentration (Glucose-Stat), feeding based on maintaining a constant dissolved oxygen level (DO-Stat) improved yields. Also, a dissolved oxygen level of 60% (air saturation) was best, as no product degradation was detected by Western blotting and SDS-PAGE. Acetic acid levels under both modes of glucose feed were sufficiently low, and no adverse growth effects were observed.

Antigens, Bacterial↗

Model-independent relationships between hematocrit, blood viscosity, and yield stress derived from Couette viscometry data.

This paper describes a procedure, based on Tikhonov regularization, for obtaining the shear rate function or equivalently the viscosity function of blood from Couette viscometry data. For data sets that include points where the sample in the annulus is partially sheared the yield stress of blood will also be obtained. For data sets that do not contain partially sheared points, provided the shear stress is sufficiently low, a different method of estimating the yield stress is proposed. Both the shear rate function and yield stress obtained in this investigation are independent of any rheological model of blood. This procedure is applied to a large set of Couette viscometer data taken from the literature. Results in the form of shear rate and viscosity functions and yield stress are presented for a wide range of hematocrits and are compared against those reported by the originators of the data and against independently measured shear properties of blood.

Blood Viscosity↗

Effect of washing on yield in one- and two-step steam pretreatment of softwood for production of ethanol.

Two-step steam pretreatment of softwood on laboratory scale has previously been shown to result in higher yields than one-step steam pretreatment. In this study, these results are verified on a larger scale. In an industrial process filtration and washing of the material between the two pretreatment steps are difficult without release of pressure. A worst case without filtration or washing was thus investigated to determine the influence of poor washing on the yield of sugars and the formation of byproducts. Steam pretreatment with SO(2) impregnation was investigated using three different procedures. One-step steam pretreatment was performed at 215 degrees C for 5 min. Two different kinds of two-step steam pretreatment were performed at 190 degrees C for 2 min in the first step and at 210 degrees C for 5 min in the second step. In one case the slurry obtained after the first pretreatment step was separated into a liquid and a solid phase, where the water-insoluble solid material was washed with water and then used for pretreatment in the second step. In the other case of two-step steam pretreatment, neither separation nor washing was performed. The pretreated material was evaluated using both enzymatic hydrolysis and fed-batch simultaneous saccharification and fermentation. Both two-step steam pretreatment process configurations investigated resulted in higher yields of ethanol (300 L/ton) than one-step steam pretreatment (227 L/ton). Separation and washing of the material between the pretreatment steps in the two-step steam pretreatment process did not improve the overall sugar yield, although the formation of sugar degradation products was reduced.

Cellulose↗

Metabolic inhibitors, elicitors, and precursors as tools for probing yield limitation in taxane production by Taxus chinensis cell cultures.

Inhibition of biosynthetic enzymes and translation and translocation processes, elicitation, and precursor feeding were used to probe biosynthetic pathway compartmentation, substrate-product relationships, and yield limitation of the diterpenoid taxanes in cell cultures of Taxus chinensis (PRO1-95). The results suggest the following: (i) the source of isopentenyl pyrophosphate in taxane production is likely plastidic rather than cytoplasmic; (ii) baccatin III may not be a direct precusor of Taxol (Taxol is a registered trademark of Bristol-Myers Squibb for paclitaxel); (iii) baccatin III appears to have cytoplasmic and plastidic biosynthetic components, while Taxol production is essentially plastidic; and (iv) arachidonic acid specifically stimulates Taxol production but does not have a significant effect on baccatin III yield. Semiempirical mathematical models were used to describe these results and predict potential yield-limiting steps. Model simulations suggest that, under current operating conditions, Taxol production in Taxus chinensis (PRO1-95) cultures is limited by the ability of the cells to convert phenylalanine to phenylisoserine rather than by the branch-point acyl transferase. This result is supported by the lack of improvement of Taxol yield by feeding phenylalanine or benzoylglycine. The methods described in this article, while specifically expanding our knowledge of taxane production in PRO1-95 cultures, could be generally useful in investigating complex aspects of secondary metabolic pathways in plant cell cultures, especially when details of the pathway and compartmentation are sparse.

Alkaloids↗

Enhancing yield of infectious Bursal disease virus structural proteins in baculovirus expression systems: focus on media, protease inhibitors, and dissolved oxygen.

Structural proteins of the poultry pathogen, infectious bursal disease virus (IBDV), were expressed in the baculovirus/insect cell expression system. To date, several reports have indicated that animal virus structural proteins are expressed only at low yield in this system. In this article, several factors were examined to enhance yield. These include medium, dissolved oxygen level, and the addition (in vivo and in vitro) of protease inhibitors. Specifically, two media were compared, and SF-900 II was superior to Ex-Cell 401 for cell growth and IBDV protein expression. A cocktail of protease inhibitors including phenylmethyl sulfonyl fluoride (PMSF), leupeptin, and ethylenediamine tetraacetic acid (EDTA) minimized proteolysis in vitro. Also, aprotinin and pepstatin A deterred product degradation in vivo and increased the product yield nearly 2-fold. Finally, in 3 L bioreactors, a dissolved oxygen tension of 50% DO (air saturation) was optimal. Results demonstrated that several relatively simple adjustments to the baculovirus system significantly improved the yield of IBD virus structural proteins.

Animals↗

Photodegradation of organic compounds adsorbed in porous mineral layers: determination of quantum yields.

Photodegradation is a key process in governing the residence time and fate of many agrochemicals in top soils. However, the basic knowledge of the photolytic transformation reactions of organic chemicals on soil surfaces is still very poor, particularly regarding the quantum yield. In this work we developed a relatively simple model for the quantification of direct photodegradation processes on porous media on the basis of the Kubelka-Munk model for radiative transfer. With the help of this model, the quantum yield was determined using two different approaches: (i) the evaluation of the disappearance rate of the compound in the whole layer and (ii) the evaluation of the reflectance change of the doped porous medium during irradiation. The first approach proved to be simplest when applied to opticallythin layers where the interference of diffusion kinetics from the nonirradiated part of the layerto the surface is minimal. Here, we report experimental results on the photodegradation of 4-nitroanisole and trifluralin on kaolinite and the first results on goethite. The quantum yield for 4-nitroanisole on kaolinite was found to be on the same order of magnitude as in water, whereas for trifluralin the quantum yield was 10 times smaller than in water. Recommendations for a revision of the presently used OECD/EPA test system are proposed.

Adsorption↗

A concept for controlling singlet oxygen (1 Delta g) yields using nitroxide radicals: phthalocyaninatosilicon covalently linked to nitroxide radicals.

In this study, we have investigated the singlet oxygen ((1)Delta(g)) generation mechanism using phthalocyaninatosilicon (SiPc) covalently linked to nitroxide radicals (NRs), and we succeeded in increasing the singlet oxygen quantum yield (Phi(Delta)) by linking the NRs. This originates from both an increase in the triplet quantum yield and excited-state lifetimes long enough to utilize photochemical reactions. Because the electron exchange interactions with paramagnetic species were known to result only in very fast excited-state relaxation, leading to a decrease in photochemical reaction yields, this increase in Phi(Delta) is an unusual and precious example for increasing photochemical reaction yields by electron exchange interactions with paramagnetic species. In addition, our experiments and theoretical analyses show that the spin-selective energy transfer rate constant is not influenced by linking the NRs and can be evaluated by the product of spin-statistical factors and matrix elements between the initial and final states.

Indoles↗

Potato performance in response to different mulches. 1. Nitrogen metabolism and yield.

This work evaluates the impact that the application of different mulches exerts on nitrogen (N) metabolism in roots and leaves and on yield of potato tubers (Solanum tuberosum var. Spunta). The parameters analyzed in this experiment were root temperature; nitrate reductase and nitrite reductase activities; concentrations of nitrates, ammonium, amino acids, proteins, and organic N; dry weight of roots and leaves; and tuber yield. Use of white polyethylene (T2) and white-black plastic (T3) promoted optimal root temperatures for plant growth (23-27 degrees C). Under these experimental conditions, plants showed the greatest efficiency in N utilization and the greatest yield in tubers. Considering the sensitivity of this plant to thermal stress, high root temperatures caused by black polyethylene (>31 degrees C) (T4) depressed N metabolism as well as yield, compared with the results of T2 and T3. Finally, clear polyethylene plastic (T1) caused more damage than did the absence of mulch (control, T0).

Nitrogen↗

Quantum yields of the initiation step and chain propagation turnovers in S(RN)1 reactions: photostimulated reaction of 1-iodo-2-methyl-2-phenyl propane with carbanions in DMSO

Neophyl radicals were generated by photoinduced electron transfer (PET) from a suitable donor to the neophyl iodide (1, 1-iodo-2-methyl-2-phenylpropane). The PET reaction of 1 with the enolate anion of cyclohexenone (2) afforded mainly the reduction products tert-butylbenzene (5) and the rearranged isobutylbenzene (6), arising from hydrogen abstraction of the neophyl radical (15) and the rearranged radical 16 intermediates, respectively. The photostimulated reaction of 1 with 2 in the presence of di-tert-butylnitroxide, as a radical trap, afforded adduct 10 in 57% yield. The photoinduced reaction of the enolate anion of acetophenone (3) with 1 gave the substitution products 11 (50%) and 12 (16%), which arise from the coupling of 3 with radicals 15 and 16, respectively. The rate constant obtained for the addition of anion 3 to radical 15 was 1.2 x 10(5) M(-)(1) s(-)(1), by the use of the rearrangement of this radical as a clock reaction. The anion of nitromethane (4) was almost unreactive at the initiation step, but in the presence of 2 under irradiation, it gave high yields (67%) of the substitution product 13 and only 2% of the rearranged product 14. When the ratio of 4 to 1 was diminished, it was possible to observe both substitution products 13 and 14 in 16% and 6.4% yields, respectively. These last results allowed us to estimate the coupling rate constant of neophyl radicals 15 with anion 4 to be at least of the order of 10(6) M(-)(1) s(-)(1). Although the overall quantum yield determined (lambda = 350 nm) for the studied reactions is below 1, the chain lengths (Phi(propagation)) for the reaction of 1 with anions 3 and 4 are 127 and 2, respectively.

Journal Article↗

Cyclization of 1-(2-alkynylphenyl)-3,3-dialkyltriazenes: a convenient, high-yield synthesis of substituted cinnolines and isoindazoles.

A new route to isoindazoles and cinnolines through the cyclization of (2-alkynylphenyl)triazenes under neutral conditions is presented. The products that result from heating the starting triazenes depend on both the type of alkyne ortho to the triazene functionality and the temperature used. Butadiyne moieties ortho to dialkyltriazenes yield bis-isoindazole dimers when heated to 150 degrees C in MeI. A requirement for cyclization in MeI is that the (2-alkynylphenyl)triazene must contain a suitably electron-withdrawing substituent on the phenyl ring to deactivate the triazene toward methylation-induced decomposition to an iodoarene. Ethynyl moieties ortho to dialkyltriazenes yield both isoindazole dimers as well as 3-formylisoindazoles when subjected to the same conditions. Replacing MeI with 1,2-dichlorobenzene as solvent allows for the general cyclization of (2-ethynylphenyl)dialkyltriazenes. Heating to 170 degrees C results in a mixture of isoindazole and cinnoline products, whereas the cinnolines are produced exclusively in high yield at 200 degrees C. Alternatively, the isoindazoles can be obtained in good to excellent yield by stirring a 1,2-dichloroethane solution of the starting triazene with CuCl overnight at 50 degrees C.

Journal Article↗

Effect of support and reactant on the yield and structure of carbon growth by chemical vapor deposition.

The effect of catalyst support and reactant on the yield and structure of carbon growth has been investigated in the chemical vapor deposition (CVD) process. Powder Fe and Fe/Al(2)O(3) were the catalysts studied, and CO/H(2), CO, CH(4), and C(2)H(6)/H(2) were used as gas precursors. Platelet and fishbone-tubular structures were produced on powder and supported Fe from CO/H(2), with average diameters of 115 and 45 nm and yields of 28.8 and 17.6 g of C/g of cat. in 8.5 h, respectively. Onionlike carbon was the main structure produced from pure CO on both catalysts. In contrast, from hydrocarbons the highest yield of 2.24 g of C/g of cat. was achieved on Fe/Al(2)O(3), with predominantly tubular structures produced and average tube diameters close to 21 nm. It is concluded that the reactivity and carbon nanostructures are dictated by the size and crystallographic orientation of the catalyst particles. It has been suggested that the tubular structures were grown by continuous carbon supply directly to the tube, but the fiber structures were grown in a layer-by-layer manner. Controlled synthesis of carbon nanotube, platelet nanofiber, fishbone-tubular nanofiber, and onionlike carbon with high selectivity and yield was demonstrated.

Journal Article↗

Application of a "black body" like reactor for measurements of quantum yields of photochemical reactions in heterogeneous systems.

We report for the first time an experimental application of the concept of a "black body" like reactor to measure quantum yields (Phi) of photochemical reactions in liquid-solid heterogeneous systems. A major advantage of this new method is its simplicity since the fractions of reflected and transmitted light are negligible due to reactor geometry and high optical density of the heterogeneous systems. The average quantum yield of a test reaction (phenol photodegradation) over TiO(2) (Degussa P25) as determined by this method was 0.14, identical to the quantum yield measured earlier for this same reaction under similar conditions by Salinaro and Serpone. We also report the quantum yield of phenol photodegradation over N-doped TiO(2) during photoexcitation at the fundamental absorption band (lambda = 365 nm; Phi = 0.12) and at the N-doping induced extrinsic absorption band (lambda = 436 nm; Phi = 0.08) of the photocatalyst.

Journal Article↗

Radiolytic hydrogen yields in aqueous suspensions of gold particles.

The effect of high concentrations of large gold particles, in the hundreds of nanometer size regime, on the yields of molecular hydrogen, G(H(2)), produced in the radiolysis of several aqueous solutions was determined. In particular we look for direct effect of radiation absorbed by the solid particles on the yield of water products. These particles, however, are catalytically active in the conversion of reducing radicals to molecular hydrogen as well. A very small increase in G(H(2)) observed in bromide solutions upon addition of 50 wt % of gold particles indicates that the radiolysis of the solid particles does not affect the yields in the aqueous phase. Very little exchange of charge carriers or energy between the two phases occurs in these large particle suspensions. On the other hand, efficient catalytic conversion of (CH(3))(2)C(*)OH radicals to H(2) is shown to occur. The efficiency of the presently studied suspensions in the redox-catalytic process is similar to that of suspensions of small particles of similar total surface area. In the presence of radicals from hydrogen atom abstraction from tert-butyl alcohol the yield decreases significantly, again similar to the behavior in suspensions of small particles. We conclude that the redox catalysis does not depend on the size of the particles when their size exceeds a few nanometers.

Journal Article↗

Flash-induced blocking of the high-affinity manganese-binding site in photosystem II by iron cations: dependence on the dark interval between flashes and binary oscillations of fluorescence yield.

Incubation of Fe(II) cations with Mn-depleted PSII membranes (PSII(-Mn)) under weak continuous light is accompanied by blocking of the high-affinity, Mn-binding (HAZ) site with ferric cations (Semin, B.K. et al. Biochemistry 2002, 41, 5854-5864). In this study we investigated the blocking yield under single-turnover flash conditions. The flash-probe fluorescence method was used to estimate the blocking efficiency. We found that the yield of blocking increases with flash number and reaches 50% after 7 flashes. When the dark interval between the flashes (Delta t) was varied, we found that the percentage of blocking decreases at Delta t < 100 ms (t 1/2, 4-10 ms). No inhibition of the blocking yield was found at longer time intervals (as with photoactivation). This result shows the necessity of a dark rearrangement during the blocking process (the dual-site hypothesis described in the text) and indicates the formation of a binuclear iron center. During the blocking experiments, we found a binary oscillation of the Fmax elicited during a train of flashes. The oscillations were observed only in the presence of Fe(II) cations or other electron donors (including Mn(II)) but not in the presence of Ca2+. Chelators had no effect on the oscillations. Our results indicate that the oscillations are due to processes on the acceptor side of PSII and to the appearance of "acceptor X" after odd flashes. Acceptor X is reduced by QA- at very high rate (<<2 ms), is not sensitive to DCMU, and is rather stable in the dark (t l/2 approximately 2 min). These properties are similar to those of nonheme Fe(III) (Fe(III)NHI). When Fe(II)NHI was oxidized with ferricyanide (Fe(CN)6), the fluorescence decay kinetics and yield of fluorescence were identical to those observed when the sample was exposed to 1 flash prior to the fluorescence measurement. We suggest that acceptor X is Fe(III)NHI, oxidized by the semiquinone form of QB-. This is similar to the mechanism of "reduction-induced oxidation of Fe(II)NHI" by exogenous quinones reported in the literature. We suggest that involvement of QB- in the oxidation of Fe(II)NHI in PSII(-Mn) membranes is due to the modification of the QB-binding site and increase of its redox potential resulting from extraction of the functional Mn cluster.

Binding Sites↗

Incidence and severity of frogeye leaf spot and associated yield losses in soybeans in agroecological zone II of Zambia.

The incidence and severity of frogeye leaf spot of soybean (Glycine max (L.) Merr.) was studied in agroecological region II of Zambia during the 1997/98 crop growing season. A survey was conducted on farmers' fields on SCSI Kaleya, Magoye and Hernon-147 cultivars. Disease incidence and severity was assessed by monitoring disease increments at two weeks interval (beginning of January to April) from nine fields, three from each province. Soybean cultivars were evaluated for yield losses resulting from frogeye leaf spot. Field plots of each cultivar were either sprayed twice with benomyl (benlate) or not sprayed at all. The results showed that the incidence of frogeye leaf spot was highest in Southern province (5.1), followed by Lusaka province (4.9) while Central province had the lowest disease incidence (1.8). Values for area under disease progress curve (AUDPC) were significantly greater (P < 0.05) for Lusaka and Southern provinces than for Central province. Yields in benomyl protected plots ranged from 1444 kg ha-1 to 2320 kg ha-1 and were significantly different among the cultivars. Average yields of non protected plants were reduced by 30.5% for Kaleya, 35.6% for Hernon-147 and 37.2% for SCS1. Incidence and severity increased with time and varied depending on weather parameters and susceptibility of cultivars to the disease. Yield losses due to frogeye leaf spot occurred through a reduction in seed size. Differences in weather conditions and amount of inocula are believed to contribute to the observed variation in incidence and severity of the disease at different locations.

Agriculture↗

Decreased nitrogen rates and irrigation effect on celery yield and internal quality.

The effect of decreased nitrogen rates (90, 60 and 30 kg N/ha) with and without irrigation on celery yield quantity and internal quality were studied in field experiments in 1993 and 1994. The decreased nitrogen rates reduced yields in both years. In the dry and warm conditions of 1994 nitrogen x irrigation interaction was clearly observed; irrigation increased yield more at higher nitrogen rates than at lower nitrogen rates. In the rainy conditions of 1993 irrigation did not effect the yield level. On the other hand, in both years, decreased nitrogen rates increased dry matter, vitamin C and dietary fiber contents, and nitrogen had a minor effect on total sugar content. In 1994 alpha- and beta carotene and thiamin were also analyzed but nitrogen had no effect on them. Irrigation increased dry matter and total sugar contents at the two lowest nitrogen rates in 1994, but decreased vitamin C contents in both years. There was also slight evidence that irrigation might decrease alpha- and beta-carotene and thiamin contents.

Agriculture↗