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PubMed1997

Stabilization by Hydrogen. Synthetic and Structural Studies of the Zintl Phase Ba(5)Ga(6)H(2).

Synthesis of the phase formerly reported as Ba(5)Ga(6) succeeds only in the presence of hydrogen. The heavy atom structure of Ba(5)Ga(6)H(2) has been redetermined by single-crystal X-ray diffraction (trigonal P3c1, Z = 2, a = 7.7698(2) Å, c = 14.3902(7) Å), and the hydrogen positions have been elucidated by time-of-flight neutron powder diffraction. The unit cell contains isolated slightly distorted octahedra Ga(6)(8)(-) with barium cations over all edges. Hydride is bound in two types of barium tetrahedra [d(Ba-H) = 2.61-2.62 Å]. The stoichiometry is appropriate for a Zintl phase: (Ba(2+))(5)Ga(6)(8)(-)(H(-))(2).

Journal Article↗
PubMed1998

Structural, Magnetic, and Ion-Exchange Properties of RbMnHP(3)O(10).

The crystal structure, magnetic properties, and ion-exchange behavior of RbMnHP(3)O(10) have been determined. The crystal structure (a = 12.1866(3) Å, b = 8.3586(2) Å, c = 9.0763(3) Å, beta = 109.067(1) degrees, space group C2/c), determined from X-ray powder diffraction, is of NH(4)FeHP(3)O(10) type, consisting of hydrogen triphosphate anions linking Jahn-Teller distorted Mn(III)O(6) octahedra around Rb(+) cations. Magnetic susceptibility measurements and low-temperature neutron powder diffraction show that RbMnHP(3)O(10) behaves as a Curie-Weiss paramagnet at high temperatures and orders antiferromagnetically below a Néel temperature of 10 K. The magnetic structure is commensurate with the nuclear cell, and the collinear antiferromagnetic structure has magnetic symmetry group P(C)()2/c' with spins of 3.82(6) &mgr;(B) lying in the ac plane. Exchange of H(+) for Li(+) has not proved possible without a breakdown of the RbMnHP(3)O(10) framework due to strong symmetric hydrogen bonding between triphosphate anions.

Journal Article↗
PubMed1976

Organisation of subunits in chromatin.

There is considerable current interest in the organisation of nucleosomes in chromatin. A strong X-ray and neutron semi-meridional diffraction peak at approximately 10 nm had previously been attributed to the interparticle specing of a linear array of nucleosomes. This diffraction peak could also result from a close packed helical array of nucleosomes. A direct test of these proposals is whether the 10 nm peak is truly meridional as would be expected for a linear array of nucleosomes or is slightly off the meridian as expected for a helical array. Neutron diffraction studies of H1-depleted chromatin support the latter alternative. The 10 nm peak has maxima which form a cross-pattern with semi-meridional angle of 8 to 9 degrees. This is consistent with a coil of nucleosomes of pitch 10 nm and outer diameter of approximately 30 nm. These dimensions correspond to about six nucleosomes per turn of the coli.

Animals↗
PubMed2003

A method to determine long-range order parameters from electron diffraction intensities detected by a CCD camera.

To determine long-range order parameters from electron diffraction intensities, the authors have developed a CCD camera system to detect precisely electron diffraction intensities, a method for quickly and precisely measuring specimen thickness, and a computer programming to calculate long-range order parameters from the ratio of superlattice and fundamental diffraction intensities. Thickness variation over a diffraction area is taken into consideration in the calculation of electron diffraction intensities on the basis of the multi-slice method, and long-range order parameters are calculated by the successive approximation method. The absorptive form factors are also calculated from experimental data of diffraction intensities by parameter fitting, and the effect of absorption on the calculation of long-range order parameters is examined. The values of Cu(3)Au alloys aged at 523 and 653 K that were obtained by averaging long-range order parameters determined for several diffraction areas with the developed method are close to the reported data obtained by the X-ray diffraction method. The main causes for the deviation of long-range order parameters determined for several diffraction areas are also discussed.

Algorithms↗
PubMed1976

Fly's eye: a counting camera for thermal neutrons-some applications, problems, and prospects.

An area detector for thermal neutrons based on image intensification techniques has been described. Some capabilities and limitations of the detection system have been discussed. Among the former are high spatial resolution, high instantaneous counting rate, electronic zoom, time-gating, and integration. The detector is limited in that the maximum counting rate for a resolution element is 60 regularly spaced counts per second. Also, the nonuniformity of response over the detector puts a limit on the useful size and necessitates point-by-point calibration. In addition, a higher efficiency for neutron detection would be desirable. Some typical applications of the system are crystal inspection, neutron magnetic diffraction topography, and searches for temperature-induced changes in diffraction patterns. The future application of solid-state television sensors and microchannel-plate intensifiers to improve the system were briefly mentioned.

Computers↗
PubMed1999

Solution and refinement of the crystal structure of Bi7Ta3O18.

The structure of heptabismuth tritantalum octadecaoxide, Bi(7)Ta(3)O(18), has been solved and refined using single-crystal X-ray diffraction data collected at a synchrotron source in conjunction with unit-cell and symmetry information derived from electron diffraction. The space-group symmetry is triclinic C1 but is very close to monoclinic C2/m. A twin component observed during data collection was successfully modelled in the refinement. The C2/m prototype fitted all the Rietveld-refinable features of a medium-resolution neutron powder diffraction pattern. The metal-atom array is approximately face-centred cubic (fluorite type), punctuated by regularly spaced displacement faults perpendicular to the [111](fluorite) direction every 2.5 fluorite unit cells. The metal-atom populations and O-atom positions are fully ordered. The Ta(5+) cations are octahedrally coordinated, with TaO(6) octahedra forming columns. The remaining O atoms occupy distorted fluorite positions. The Bi(3+) cations occupy octahedral, square pyramidal or trigonal prismatic sites within the O-atom array; strain in the latter coordination environment appears to be responsible for the lowering of symmetry from monoclinic to triclinic.

Journal Article↗
PubMed2004

Local and long-range order in ferroelastic lead phosphate at high pressure.

Pure lead phosphate, Pb(3)(PO(4))(2), undergoes a phase transition from C2/c to R(-)3m symmetry at a pressure of approximately 1.8 GPa and room temperature. Single-crystal X-ray diffraction measurements of the unit-cell parameters of a sample doped with 1.6% Ba(2+) for the Pb(2+) indicates that the doping reduces the transition pressure by approximately 0.1 GPa. The structural evolution of both samples through the phase transition has been determined by Rietveld refinement of neutron powder diffraction data collected to pressures of 6.3 and 3.3 GPa, respectively. There is no evidence for any significant change in the local structure at the phase transition at high pressures; the structure of the R(-)3m phase at pressures just above the phase transition includes disordered positions for several atoms. The observation of diffuse scattering from the R(-)3m phase at high pressure by single-crystal X-ray diffraction suggests that the disorder is static and arises from the presence of several orientations of the ordered microdomains of the monoclinic local structure. The macroscopic transition from monoclinic to trigonal symmetry therefore appears to correspond to the pressure at which the coherency strains between the locally monoclinic microdomains are sufficient to create a dimensionally trigonal lattice within which local displacements of atoms are still significant. A further pressure increase then decreases the magnitude of these displacements until at 3.5 GPa or higher they are not detectable by our current experimental probes, and the structure appears to have true local and global trigonal symmetry.

Journal Article↗
PubMed2006

High-pressure synthesis and study of the crystal and magnetic structure of the distorted SeNiO3 and SeMnO3 perovskites.

We describe the preparation of SeMO(3) (M = Ni, Mn) under high pressure conditions (3.5 GPa), starting from reactive H(2)SeO(3) and MO mixtures, contained in sealed gold capsules under the reaction conditions 850 degrees C for 1 h. The polycrystalline samples have been studied by neutron powder diffraction (NPD) data and magnetization measurements. SeMO(3) (M = Ni, Mn) are orthorhombically distorted perovskites (space group Pnma). Below T(N) approximately 104 K (M = Ni) and T(N) approximately 53.5 K (M = Mn) these oxides experience an antiferromagnetic ordering, as demonstrated by susceptibility and NPD measurements. The magnetic reflections observed in the neutron patterns can be indexed with a propagation vector k = 0. Both compounds present the same magnetic structure, which is given by the basis vector (0, 0, A(z)). It can be described as antiferromagnetic (010) layers of magnetic moments lying along the c direction, which are antiferromagnetically coupled along the b direction. For the Ni(2+) ions, the ordered magnetic moment at T = 2.3 K is 2.11(3) micro(B), whereas for Mn(2+) at T = 2.6 K, |m| = 4.64(2) micro(B), consistent with the electronic configurations te (Ni(2+)) and te (Mn(2+)).

Journal Article↗
PubMed2005

Synthesis and structure of the framework scandium methylphosphonates ScF(H2O)CH3PO3 and NaSc(CH3PO3)2.0.5H2O.

Two framework scandium methylphosphonates have been prepared hydrothermally and their structures solved. ScF(H(2)O)CH(3)PO(3) is a non-porous solid built up from -ScF- chains linked by methylphosphonate groups. The ScO(4)F(2) octahedra are completed by a coordinated water molecule. NaSc(CH(3)PO(3))(2).0.5H(2)O was solved ab initio from high-resolution synchrotron X-ray powder diffraction data. It has a fully connected, negatively charged scandium phosphonate framework where ScO(6) octahedra share vertices with PO(3)CH(3) groups. The solid contains charge balancing sodium cations, coordinated by a water molecule, which may be reversibly removed and adsorbed. The structure of the perdeuterated, dehydrated solid has been refined against neutron powder diffraction data collected at 2.5 K, showing the CD(3) groups in a fully staggered orientation with respect to the phosphonate oxygen atoms.

Journal Article↗
PubMed2003

Determination of the mean inner potential in III-V semiconductors by electron holography.

The mean inner potential of GaAs(14.18V), InAs(14.50V), GaP(14.35V) and InP(14.50V) has been measured by transmission electron holography using the phase shift of the (000)-beam of the first hologram sideband. To provide a defined specimen geometry we used 90 degrees wedges obtained by the cleavage technique. The exact excitation condition as well as the acceleration voltage of the electrons were determined from convergent beam electron diffraction images. The magnification is extracted from two-beam lattice fringe images and dynamical effects are taken into account by Bloch-wave calculations.

Algorithms↗
PubMed2003

Laves-phase structural changes in the system CaAl2-xMgx.

Compounds CaAl(2)(-)(x)Mg(x) (0 < or = x < or = 2) were synthesized and structurally characterized by X-ray diffraction experiments. With increasing Mg content x the sequence of Laves phase structures MgCu(2) --> MgNi(2) --> MgZn(2) is revealed. The homogeneity ranges of the underlying phases were determined to be 0 < or = x < 0.24(1) (MgCu(2) type), 0.66(2) < x < 1.07(3) (MgNi(2) type), and 1.51(5) < x < or = 2.0 (MgZn(2) type). Mg/Al site occupancies in CaAl(1.34)Mg(0.66) and in CaAl(0.44)Mg(1.56) were refined from neutron powder diffraction experiments and exposed a pronounced segregation of Al and Mg in MgNi(2)-type CaAl(1.34)Mg(0.66) where Al atoms preferentially occupy the positions corresponding to trigonal bipyramids. In MgZn(2)-type CaAl(0.44)Mg(1.56), however, the Mg/Al distribution was found to be nearly uniform. Structural stability in the quasi-binary system CaAl(2)(-)(x)Mg(x) was investigated by first-principles calculations in which random occupational disorder of Mg and Al was modeled with the virtual crystal approximation. The theoretical calculations reproduced the experimental compositional stability ranges of the three different Laves phase structures very well. Structural changes in the quasi-binary system CaAl(2)(-)(x)Mg(x) are induced by the electron concentration, which decreases with increasing x. The stability of the different Laves phase structures as a function of electron concentration was analyzed by the method of moments.

Journal Article↗
PubMed2005

Influence of phytosphingosine-type ceramides on the structure of DMPC membrane.

The present paper describes the influence of the ceramides with phytosphingosine base, N-stearoylphytosphingosine (Cer[NP]) and alpha-hydroxy-N-stearoylphytosphingosine (Cer[AP]), on the structure and properties of multilamellar (MLVs) and unilamellar vesicles (ULVs) of dimyristoylphosphatidylcholine (DMPC). The lamellar repeat distance, D, has been measured at various temperatures using small angle X-ray diffraction. The incorporation of ceramides into the DMPC membrane causes larger D compared to pure DMPC membrane. For both ceramide types, at 32 degrees C, there is a linear relationship between the D value and the ceramide concentration. However, there is no such dependence at 13 or 60 degrees C. Unlike Cer[AP], Cer[NP] induces a new phase with a repeat distance of 38.5A. The membrane thickness and the vesicle radius of ULVs in water and in sucrose solution were calculated from small angle neutron scattering curves. Phytosphingosine ceramides increase both the membrane thickness and the radius in comparison to pure DMPC ULVs. The stability of ULVs in time was studied by dynamic light scattering. Both ceramides induce an aggregation of the ULVs into micrometer sized non-multilamellar structures in pure water. Presence of sucrose in the environment averts the vesicle aggregation.

Ceramides↗
PubMed2005

Boron-induced hydrogen localization in the novel metal hydride LaNi(3)BH(x) (x = 2.5-3.0).

The crystal structure and hydrogenation properties of the intermetallic boride LaNi(3)B were investigated. The hydrogen-free compound has a novel structure with orthorhombic symmetry, space group Imma, a = 4.9698(8) A, b = 7.1337(8) A, c = 8.3001(9) A, and V = 294.26(7) A(3). Thermal gravimetrical analysis reveals a hydride phase that forms near ambient conditions within the compositional range LaNi(3)BH(2.5)(-)(3.0). Single-crystal X-ray diffraction on both the alloy and the hydride, using the same crystal, shows an expansion in the a-c plane (by up to approximately 8%) and a contraction along b (by approximately 3%), while the symmetry changes from Imma to Bmmb (Cmcm) and the unit cell doubles along a and b. The cell parameters for the composition of LaNi(3)BD(2.73(4)) are a = 10.7709(7) A, b = 16.0852(10) A, c = 7.6365(5) A, V = 1323.03(15) A(3), and space group Cmcm. Four nearly fully occupied interstitial hydrogen sites were located by neutron powder diffraction on deuterides and found to have tetrahedral, La(2)Ni(2) (D1,D2), trigonal-prismatic, La(3)Ni(3) (D3), and trigonal-bipyramidal, La(2)Ni(3) (D4), metal environments. The structure can also be described in terms of alternating quasi two-dimensional [NiD](-) slabs (Ni-D = 1.62-1.97 A) and La-B sheets for which bond-valence sums suggest the limiting formula La(3+)B(0)[Ni(3)D(3)](3)(-). The La-B planes do not accommodate deuterium; the B-D and D-D interactions appear to be repulsive. The shortest B-D and D-D contacts are 2.52(2) and 2.33(2) A, respectively.

Journal Article↗
PubMed1999

Crystal and molecular structures of 2-

The crystal and molecular structures of 2-[1-(2-aminoethyl)-2-imidazolidinylidene]-2-nitroacetonitrile [C(7)H(11)N(5)O(2); space group P2(1)/n; Z = 4; a = 7.4889 (8), b = 17.273 (2), c = 7.4073 (8) Å, beta = 111.937 (6) degrees ], (I), and 2,6-diamino-5-hydroxy-3-nitro-4H-pyrazolo[1,5-a]pyrimidin-7-one monohydrate [C(6)H(6)N(6)O(4).H(2)O; space group P2(1)/n; Z = 4; a = 17.576 (3), b = 10.900 (2), c = 4.6738 (6) Å, beta = 92.867 (8) degrees ], (II), have been determined from X-ray, synchrotron and neutron powder diffraction data using various methods. The structures were originally solved from Guinier photographs with a grid search procedure and the program MRIA using a priori information from NMR and mass spectra on the possible geometry of the molecules. Because the conformation of molecule (I) changed during the bond-restrained Rietveld refinement, solvent water was found in (II) and, moreover, as both Guinier patterns were corrupted by texture, high-resolution texture-free synchrotron data were collected at the BM16 beamline, ESRF, to confirm the original results. Using the set of |F|(2) values derived from the synchrotron patterns after full-pattern decomposition procedures, the structures of (I) and (II) were solved by direct methods via SHELXS96, SIRPOW.92 and POWSIM without any preliminary models of the molecules, and by Patterson search methods via DIRDIF96 and PATSEE with the use of rigid fragments from each of the molecules. The neutron patterns allowed (I) and (II) to be solved using the grid search procedure and correct initial models of the molecules including H atoms. The results obtained from powder patterns measured on different devices demonstrate the high level of reproducibility and reliability of various powder software and equipment, with a certain preference for synchrotron facilities.

Journal Article↗
PubMed2000

Direct determination of the positions of the deuterium atoms of the bound water in -concanavalin A by neutron Laue crystallography.

The correct positions of the deuterium (D) atoms of many of the bound waters in the protein concanavalin A are revealed by neutron Laue diffraction. The approach includes cases where these water D atoms show enough mobility to render them invisible even to ultra-high resolution synchrotron-radiation X-ray crystallography. The positions of the bound water H atoms calculated on the basis of chemical and energetic considerations are often incorrect. The D-atom positions for the water molecules in the Mn-, Ca- and sugar-binding sites of concanavalin A are described in detail.

Binding Sites↗
PubMed2001

Ternary alkali metal transition metal acetylides A2MC2 (A = Na, K; M = Pd, Pt).

Ternary transition metal acetylides A2MC2 (A = Na, K; M = Pd, Pt) can be synthesised by reaction of the respective alkali metal acetylide A2C2 with palladium or platinum in an inert atmosphere at about 350 degrees C. The crystal structures are characterised by (infinity)1[M(C2)(2/2)2-] chains, which are separated by the alkali metals (P3m1, Z = 1). The refinement of neutron powder diffraction data gave C-C = 1.263(3) A for Na2PdC2 (Na2PtC2: 1.289(4) A), which is distinctively longer than the expected value for a C-C triple bond (1.20 A). On the basis of band-structure calculations this can be attributed to a strong back-bonding from the metal into the anti-bonding orbitals of the C2 unit. This was further confirmed by Raman spectroscopic investigations, which showed that the wavenumbers of the C-C stretching vibrations in Na2PdC2 and Na2PtC2 are about 100 cm(-1) smaller than in acetylene. 13C MAS-NMR spectra demonstrated that the acetylenic C2 units in the title compounds are very different from those in acetylene. Electrical conductivity measurements and band-structure calculations showed that the black title compounds are semiconductors with a small indirect band gap (approximately 0.2 eV).

Journal Article↗