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Modulation transfer function of a digital dental x-ray system.

An impulse train method to control aliasing was used to measure the modulation transfer function of a digital dental x-ray system (RVG 32000 ZHR, Trophy Radiologie, Vincennes, France). The detector of this system is composed of an intensifying screen, a fiber optics taper, and a charged couple device chip. The modulation transfer function could not be measured by impulse method such as the line spread function or edge response function because of aliasing from undersampling of the digital system. The system modulation transfer function was difficult to recover at the spatial frequencies smaller than the Nyquist frequency. The modulation transfer function beyond the Nyquist frequencies was impossible to recover in this study.

Fourier Analysis↗

Fabrication of collagen-coated biodegradable polymer nanofiber mesh and its potential for endothelial cells growth.

Endothelialization of biomaterials is a promising way to prevent intimal hyperplasia of small-diameter vascular grafts. The aim of this study was to design a nanofiber mesh (NFM) that facilitates viability, attachment and phenotypic maintenance of human coronary artery endothelial cells (HCAECs). Collagen-coated poly(L-lactic acid)-co-poly(epsilon-caprolactone) P(LLA-CL 70:30) NFM with a porosity of 64-67% and a fiber diameter of 470+/-130 nm was fabricated using electrospinning followed by plasma treatment and collagen coating. The structure of the NFM was observed by SEM and TEM, and mechanical property was studied by tensile test. The presence of collagen on the P(LLA-CL) NFM surface was verified by X-ray photoelectron spectroscopy (XPS) and quantified by colorimetric method. Spatial distribution of the collagen in the NFM was visualized by labelling with fluorescent probe. The collagen-coated P(LLA-CL) NFM enhanced the spreading, viability and attachment of HCAECs, and moreover, preserve HCAEC's phenotype. The P(LLA-CL) NFM is a potential material for tissue engineered vascular graft.

Biocompatible Materials↗

Sheep scab outbreaks in Great Britain between 1973 and 1992: spatial and temporal patterns.

In January 1973, the mange mite Psoroptes ovis was found in a sheep flock in Lancashire, UK after a 20 year period of eradication. Over the next 20 years, a total of 1480 flock outbreaks were reported, until June 1992 when the control of sheep scab was deregulated. The spatial and temporal patterns of the number of outbreaks in each month over this period were analysed using time series methods, a geographical information system (GIS) and second order approaches to the exploration of space-time interaction (K-function analysis). The monthly time series displays clear evidence of seasonal cyclicity, with most outbreaks being reported in the winter months. After removal of the summer compulsory dip in 1988 however, there is evidence of a change in the seasonal pattern, with more cases being reported in the autumn months. There is also evidence of a contribution from a sinusoidal wave with a period of 8 years, which roughly corresponds to the major changes in the national control policy. The spatial pattern also appears to expand and contract on a roughly 4 year cycle, again reflecting the oscillating periods of success and failure. Examination of the spatial and temporal pattern revealed strong evidence of space-time clustering (p < 0.001) and a major contribution to the pattern from very local (< 12 km) spread within 5 months of an arbitrary outbreak.

Animals↗

Evidence of airborne transmission of the severe acute respiratory syndrome virus.

BACKGROUND: There is uncertainty about the mode of transmission of the severe acute respiratory syndrome (SARS) virus. We analyzed the temporal and spatial distributions of cases in a large community outbreak of SARS in Hong Kong and examined the correlation of these data with the three-dimensional spread of a virus-laden aerosol plume that was modeled using studies of airflow dynamics. METHODS: We determined the distribution of the initial 187 cases of SARS in the Amoy Gardens housing complex in 2003 according to the date of onset and location of residence. We then studied the association between the location (building, floor, and direction the apartment unit faced) and the probability of infection using logistic regression. The spread of the airborne, virus-laden aerosols generated by the index patient was modeled with the use of airflow-dynamics studies, including studies performed with the use of computational fluid-dynamics and multizone modeling. RESULTS: The curves of the epidemic suggested a common source of the outbreak. All but 5 patients lived in seven buildings (A to G), and the index patient and more than half the other patients with SARS (99 patients) lived in building E. Residents of the floors at the middle and upper levels in building E were at a significantly higher risk than residents on lower floors; this finding is consistent with a rising plume of contaminated warm air in the air shaft generated from a middle-level apartment unit. The risks for the different units matched the virus concentrations predicted with the use of multizone modeling. The distribution of risk in buildings B, C, and D corresponded well with the three-dimensional spread of virus-laden aerosols predicted with the use of computational fluid-dynamics modeling. CONCLUSIONS: Airborne spread of the virus appears to explain this large community outbreak of SARS, and future efforts at prevention and control must take into consideration the potential for airborne spread of this virus.

Aerosols↗

[A simulation method for studying scintillation camera collimators].

This paper presents a computer simulation of photon interaction with collimator septa, which allows the point spread function of scintillation camera collimators to be calculated. The method simulates photon attenuation along their propagation direction in a determinist way. Using this simulation, the spatial resolution, geometric efficiency and penetration index of collimators may be easily assessed. Results obtained with this method are presented and compared with those obtained from standard formulae. We show the usefulness of the simulation which precisely accounts for effects of septum penetration. Measurements performed on two collimators with 131I and 99Tcm point sources provide results consistent with those obtained from the simulation method. In conclusion we show that this method is an accurate tool to assist conception of collimators for nuclear medicine.

Computer Simulation↗

Transmission of salmonellae among calves penned individually.

An analysis of the spatial and temporal patterns of excretion of salmonellae by calves penned individually showed that non-contagious routes were more important than contagious routes in disease spread. The avoidance of aerosol production, and the effective cleaning and disinfection of utensils between feeds and of buildings between batches, are likely to be more important than pen design in the control and prevention of calf salmonellosis.

Aerosols↗

Incoherent image formation in the presence of scattering eye media.

Incoherent image formation in human eyes that have scattering eye media is investigated as a function of the particle size and the optical density of the scattering medium and for test targets that differ in form and size. For single scattering by large particles (much greater than lambda), a point-spread function and the associated modulation-transfer function of the scattered light are derived from diffraction theory. It is shown that object structures with low spatial frequencies are also imaged by the scattered light. Following single scattering by small particles and/or multiple scattering, the scattered light forms an approximately uniform background. Consequently, the retinal contrast is reduced regardless of spatial frequency. The image quality is, contrary to what is found in normal image formation, extremely sensitive to the form and size of the test target. It is shown that the optimal readability of white-on-black letters is obtained at intermediate spatial frequencies. For an extended layer of arbitrary optical density and particle size, the influence of multiple scattering is approximated by using Hartel's scattering theory. It is shown that wavelength has only a small influence on retinal contrast for scattering by particles greater than lambda.

Humans↗

Improving visual function diagnostic metrics with the use of higher-order aberration information from the eye.

PURPOSE: This paper reviews the currently used visual function diagnostic metrics, acuity, refractive error, and contrast sensitivity, and suggests ways to create new metrics using the information that has recently become available due to advances in measuring the higher-order aberrations of the eye. Particularly, emphasis is placed on finding metrics that address certain aspects of vision rather than on general metrics. METHODS: Two metrics based on the modulation transfer function are introduced, the Visual Quality Factor (VQF), which is a value based on the modulation transfer function between the spatial frequencies of 3 and 12 cycles per degree (c/deg) giving a measure of the overall degradation of visual quality due to aberrations, and the Subjective Sharpness Factor (SSF), which is a value based on the modulation transfer function between the spatial frequencies of 15 and 40 c/deg, giving a measure of the decrease in perceived image "sharpness" due to aberrations. Two metrics based on the point spread function are suggested, Point Spread Quality (PSQ), which is a measure of the "compactness" of the point spread, and Multiplicity Factor, which is a measure of the multiplicity of perceived images by measuring the number of discrete peaks in the point spread function. RESULTS: The VQF and SSF values for both monochromatic and polychromatic cases are analyzed with regard to the number of acuity letters lost using data from a published study. CONCLUSIONS: The SSF is found to be the best overall correlate with acuity performance if the degradation of the letter stimuli is not excessive.

Diagnostic Techniques, Ophthalmological↗

Genetic diversity and structure of the narrow endemic Wyethia reticulata and its congener W. bolanderi (Asteraceae) using RAPD and allozyme techniques.

Wyethia reticulata is an edaphic endemic in the Sierra Nevada foothills. Its sympatric congener, W. bolanderi, is also restricted to the foothills, but has a north-south range of 275 km, compared to 14 km for W. reticulata. The goals of this study were to determine clonal diversity, population size, genetic variation, and spatial and generic structure for each species from paired populations in El Dorado County, California, using allozyme and RAPD (random amplified polymorphic DNA) methodologies. Wyethia reticulata, spreading by rhizomes, had populations dominated by a few large individuals, while W. bolanderi, with a basal caudex, had populations of a few hundred evenly sized individuals. Genetic analyses indicated that W. reticulata, compared to its congener, had somewhat less genetic diversity (H(T): 0.28 vs. 0.38), had more of its genetic variation partitioned among populations (F(ST): 0.25 vs. 0.07), and showed a complete absence of inbreeding (F(IS): -0.03 vs. 0.22). Population membership in accord with populations defined by geographical location resulted only when all markers were included in the analysis. Ecological limits on recruitment of genets appears to result in small population size in W. reticulata. Limited gene flow, drift within small populations, and sexual reproductive dominance of large clones result in the genetic divergence of populations in this species, while genetic diversity is maintained by the longevity of clones and outbreeding.

Journal Article↗

[Structure of the morphogenetic movements of gastrulation in Anura. II. The elementary morphogenetic processes].

The clinostate rotation causes a wide range of gastrulation abnormalities in the Anura. A special investigation has shown that all gastrulation variants may be represented as various spatial-temporal compositions of the same morphogenetic processes isolated by means of formal experimental procedure. These processes are structurally stable rearrangements of tissue morphology and are spread in the tissue as a wave embracing more and more cells. The change of one local morphology for another may proceed either in the form of "shock wave", a moving distinct border between the cells already switched and not yet switched to the new automorphous movement, or in the form of "deployment" when the transition from one local morphology to another is continuously deployed in space.

Amphibians↗

[Leukemias and other hemoblastoses: description of unusual clustering and difficulties in evaluation. A report on the epidemiology of leukemias and related diseases in rural communities].

The purpose of this study, drawn up as a localised report, was to find out whether the accumulation of notified cases of leukaemia and haemoblastosis over a 40-year observation period, in a restricted region within a small village, can also be found in other localities of the northern Bavarian administration district of Kronach. This region was very out-of-the-way before German reunification. With its static indigenous population, and the retrieval possibilities of respective archives, it offered good conditions for a long-term study over four decades; 13 out of 63 administrative district communities could be randomly selected for research. Between 1950 and 1993, 144 patients who contracted either leukaemia or another type of malignant neoplasm of the lymphoid and haematopoetic tissues were recorded (Pos. C 81-C 96 ICD 10). When these patients' dwellings were charted, a sporadic, inconspicious, temporal-spatial distribution became apparent in seven out of 13 localities. However, in six of the 13 communities there was the same limited local concentration of cases spread over a period of time, as had been observed in the abovementioned village. This cartographically noticeable concentration was termed "cluster"; in these "clusters", both locals and long-term residents were affected. What these "clusters" have in common topographically is that they are noticeably located in moist areas. The study clearly demonstrates the difficulties in assessing these cartographically significant "clusters" from a statistical point of view, i.e. in making a risk quantification for small populations and with insufficient demographic data. Therefore, no statement can be made as to whether the observed "clusters" represent change findings, or rather, an epidemiological, i.e. endemic fundamental pattern of leukaemia and haemoblastoses; one that, within a shorter observation period, must remain undetected-that is, could be disguised by population migrations.

Adolescent↗

Spatial organization of the bipolar cell's receptive field in the retina of the tiger salamander.

1. The spatial properties of rods, horizontal cells and bipolar cells were studied by intracellular recording in the isolated, perfused retina of the tiger salamander, Ambystoma tigrinum. Low stimulus intensities were used in order to keep cell responses close to, or within, their linear intensity/response range. 2. Spatial properties of bipolar cell receptive fields, measured while perfusing with normal Ringer solution, were compared with those measured during exposure to agents that eliminated the bipolar cells' receptive field surround (RFS). In this way, the spatial properties of the receptive field centre (RFC) and those of the RFS could be characterized independently. 3. To a good approximation, the contribution to the horizontal cell's response of unit area of its receptive field declined exponentially with distance from the centre of the receptive field. The (apparent) length constant describing this decay was 200 microns. The one-dimensional length constant of the horizontal cell syncytium was thus 248 microns. The variation of response amplitude with the radius of a centred circular stimulus was consistent with this finding. 4. This was true also of the RFCs of bipolar cells. The one-dimensional length constant of the RFC of off-centre bipolar cells averaged 124 microns. That of the RFC of on-centre cells averaged 62 microns though values were more variable, the RFCs of some on-centre cells being comparable to those of off-centre cells. These values were independent of the class of photoreceptor driving the bipolar cell. 5. The large size of the RFCs of off-centre cells and many on-centre cells cannot by explained by light scatter within the retina or by voltage spread within the rod syncytium. We proposed that off-centre cells are tightly coupled in a syncytium. On-centre cells, on average, are less tightly coupled. 6. The spatial properties of the bipolar cell's RFS were consistent with the notion that the RFS represents a convolution of the horizontal cell's receptive field and the bipolar cell's RFC. 7. The spatial properties of bipolar cell receptive fields were reconstructed from the measured properties of their RFCs and the measured properties of horizontal cell receptive fields. Under the conditions of our experiments, the bipolar cell's response could be described by a linear difference between a component generated by the RFC and a component generated by the RFS. 8. The spatial filtering characteristics of the bipolar cells were calculated from our data.(ABSTRACT TRUNCATED AT 400 WORDS)

Action Potentials↗

Spatial and temporal variations in local spike propagation in the myometrium of the 17-day pregnant rat.

Detailed spatial analysis of propagation of individual action potential was performed during spontaneous bursts of activity in the isolated 17-day pregnant rat myometrium. Use was made of high-resolution mapping with simultaneous recordings from 240 extracellular electrodes. Positioning of the electrode assembly by itself did not have any adverse effects, and no differences were found in the period or duration of spontaneous bursts recorded with and without the electrode assembly touching the tissue. The spread of propagation of individual action potentials was reconstructed at several moments during myometrial spike bursts. Both the direction and the sequence of activation of the myometrium were found to be highly variable and depended on 1) the level and spatial dispersion of excitability and 2) whether conduction occurred predominantly in the longitudinal or the circumferential direction. Furthermore, conduction was frequently complicated by the spontaneous occurrence of 1) lines of conduction block, 2) focal sites of pacemaking, or 3) merging of two or more wavelets into a single wave. In contrast, when the myometrium was divided into small segments, activity became much more regular, and both the location of the pacemaker and the direction of propagation were much more stable than in the whole myometrium. In conclusion, spontaneous spatial variations in local spike propagation at the preterm stage could provide for the necessary asynchrony in activation and play a role in the prevention of forceful contractions and premature labor.

Action Potentials↗

Diffusion MR imaging during acute subarachnoid hemorrhage in rats.

BACKGROUND AND PURPOSE: We analyzed the temporal and spatial pattern of water diffusion changes during acute subarachnoid hemorrhage (SAH) in rat brain to identify factors contributing to the acute pathophysiology of SAH. METHODS: Subarachnoid hemorrhage was remotely induced via perforation of the circle of Willis with an endovascular suture during MR imaging. A fast echo-planar imaging technique was used to acquire 60 maps of the apparent diffusion coefficient (ADC) beginning 1 min before and continuing for 11 min after induction of SAH. A high-resolution spin-echo diffusion sequence was used to follow diffusion changes over 6 h after SAH. Sham-operated control (n=3), nonheparinized (n=6), and heparinized (n=5) groups were studied. RESULTS: Sham-operated control animals did not show ADC changes over time. In both SAH groups, however, a sharp decline of ADC within 2 min of SAH was consistently observed in the ipsilateral somatosensory cortex. These decreases in diffusion then spread within minutes over the ipsilateral hemisphere. Similar ADC decreases on the contralateral side started with a further time delay of 1 to 3 min. From 30 min onward, the extent of the diffusion abnormality decreased progressively in the nonheparinized animals. No recovery was observed in heparinized rats. CONCLUSIONS: MR diffusion imaging allows new insight into the pathophysiology of acute SAH: The spatial and temporal pattern of diffusion changes suggests the initial occurrence of acute vasospasm and subsequently "spreading depolarization" of brain tissue. Persistent hemorrhage in heparinized animals was reflected by early decline of ADC values throughout the entire brain.

Acute Disease↗

Root distribution and interactions between intercropped species.

Even though ecologists and agronomists have considered the spatial root distribution of plants to be important for interspecific interactions in natural and agricultural ecosystems, few experimental studies have quantified patterns of root distribution dynamics and their impacts on interspecific interactions. A field experiment was conducted to investigate the relationship between root distribution and interspecific interactions between intercropped plants. Roots were sampled twice by auger and twice by the monolith method in wheat (Triticum aestivum L.)/maize (Zea mays L.) and faba bean (Vicia faba L.)/maize intercropping and in sole wheat, maize, and faba bean up to 100 cm depth in the soil profile. The results showed that the roots of intercropped wheat spread under maize plants, and had much greater root length density (RLD) at all soil depths than sole wheat. The roots of maize intercropped with wheat were limited laterally, but had a greater RLD than sole-cropped maize. The RLD of maize intercropped with faba bean at different soil depths was influenced by intercropping to a smaller extent compared to maize intercropped with wheat. Faba bean had a relatively shallow root distribution, and the roots of intercropped maize spread underneath them. The results support the hypotheses that the overyielding of species showing benefit in the asymmetric interspecific facilitation results from greater lateral deployment of roots and increased RLD, and that compatibility of the spatial root distribution of intercropped species contributes to symmetric interspecific facilitation in the faba bean/maize intercropping.

Agriculture↗

Optimization of radiation therapy: integral-response of a model biological system.

Several radiotherapy treatment planning criteria have been proposed for dose distribution optimization. Here we present a simple mathematical model of an idealized biological system. From it we have derived an objective function designed to achieve an extremum for that particular plan which minimizes the probabilities of occurrence of unacceptable complications in healthy tissue and of recurrence or spread of disease. The model assumes that an organism is separable into physiologically discrete compartments or organs, each consisting of a set of microscopic functional units with their own dose-response characteristics. In analogy to the integral-dose, we define an integral-response parameter v as a measure of radiation-induced damage; the value of this v may be calculated for any given spatial distribution of dose in a compartment or organ. A Probability of Serious Complications function, PSC(v), then provides an estimate of the likelihood of occurrence of unacceptable complications. Special problems arising with paired organs (kidneys), "series" organs (spinal cord), and the recurrence and spread of disease are addressed. The PSC for the various organs and neoplasia can be combined to form a compound Complication Factor (CF) objective function; the lower the value of the CF, the better the overall plan. Prospects for making the model explicitly time/fractionation dependent, and for incorporating utility theoretic ideas, are discussed.

Humans↗

Anatomical analysis of Saccharomyces cerevisiae stalk-like structures reveals spatial organization and cell specialization.

Recently we reported an unusual multicellular organization in yeast that we termed stalk-like structures. These structures are tall (0.5 to 3 cm long) and narrow (1 to 3 mm in diameter). They are formed in response to UV radiation of cultures spread on high agar concentrations. Here we present an anatomical analysis of the stalks. Microscopic inspection of cross sections taken from stalks revealed that stalks are composed of an inner core in which cells are dense and vital and a layer of cells (four to six rows) that surrounds the core. This outer layer is physically separated from the core and contains many dead cells. The outer layer may form a protective shell for the core cells. Through electron microscopy analysis we observed three types of cells within the stalk population: (i) cells containing many unusual vesicles, which might be undergoing some kind of cell death; (ii) cells containing spores (usually one or two spores only); and (iii) familiar rounded cells. We suggest that stalk cells are not only spatially organized but may undergo processes that induce a certain degree of cell specialization. We also show that high agar concentration alone, although not sufficient to induce stalk formation, induces dramatic changes in a colony's morphology. Most striking among the agar effects is the induction of growth into the agar, forming peg-like structures. Colonies grown on 4% agar or higher are reminiscent of stalks in some aspects. The agar concentration effects are mediated in part by the Ras pathway and are related to the invasive-growth phenomenon.

Culture Media↗

3-D vision and figure-ground separation by visual cortex.

A neural network theory of three-dimensional (3-D) vision, called FACADE theory, is described. The theory proposes a solution of the classical figure-ground problem for biological vision. It does so by suggesting how boundary representations and surface representations are formed within a boundary contour system (BCS) and a feature contour system (FCS). The BCS and FCS interact reciprocally to form 3-D boundary and surface representations that are mutually consistent. Their interactions generate 3-D percepts wherein occluding and occluded object parts are separated, completed, and grouped. The theory clarifies how preattentive processes of 3-D perception and figure-ground separation interact reciprocally with attentive processes of spatial localization, object recognition, and visual search. A new theory of stereopsis is proposed that predicts how cells sensitive to multiple spatial frequencies, disparities, and orientations are combined by context-sensitive filtering, competition, and cooperation to form coherent BCS boundary segmentations. Several factors contribute to figure-ground pop-out, including: boundary contrast between spatially contiguous boundaries, whether due to scenic differences in luminance, color, spatial frequency, or disparity; partially ordered interactions from larger spatial scales and disparities to smaller scales and disparities; and surface filling-in restricted to regions surrounded by a connected boundary. Phenomena such as 3-D pop-out from a 2-D picture, Da Vinci stereopsis, 3-D neon color spreading, completion of partially occluded objects, and figure-ground reversals are analyzed. The BCS and FCS subsystems model aspects of how the two parvocellular cortical processing streams that join the lateral geniculate nucleus to prestriate cortical area V4 interact to generate a multiplexed representation of Form-And-Color-And-DEpth, or FACADE, within area V4. Area V4 is suggested to support figure-ground separation and to interact with cortical mechanisms of spatial attention, attentive object learning, and visual search. Adaptive resonance theory (ART) mechanisms model aspects of how prestriate visual cortex interacts reciprocally with a visual object recognition system in inferotemporal (IT) cortex for purposes of attentive object learning and categorization. Object attention mechanisms of the What cortical processing stream through IT cortex are distinguished from spatial attention mechanisms of the Where cortical processing stream through parietal cortex. Parvocellular BCS and FCS signals interact with the model What stream. Parvocellular FCS and magnocellular motion BCS signals interact with the model Where stream.(ABSTRACT TRUNCATED AT 400 WORDS)

Depth Perception↗