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Results for “adaptive evolution”

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At least 1,009 records · Page 56Linked to original sources
PubMed1991

Plasmid macro-evolution: selection of deletions during adaptation in a nutrient-limited environment.

Under conditions where plasmid-carriage is deleterious to the cell, evolutionary changes may be expected which result in an attenuation of the deleterious effect of the plasmid. During long-term growth in glucose-limited continuous culture, initiated with a single clone of Escherichia coli containing a derivative of the plasmid pBR322, a structural change arose in the plasmid and predominated in the plasmid-containing sector of the population. This variant possessed a 2.25 kb deletion encompassing the tetracycline resistance operon as well as a region of about 1.5 kb upstream from this operon. Competition experiments involving strains carrying the plasmid with the spontaneous deletion, and strains carrying plasmids with artificially constructed deletions, revealed that deletion of this region of the plasmid, involving loss of tetracycline resistance, resulted in an increment in fitness of between 10 and 20%. From the magnitude of the growth advantage, we conclude that the attenuation of the deleterious effect of the plasmid was mainly due to a reduction in the plasmid mediated interference in the metabolism of the cell caused by a deletion of the tetracycline resistance gene.

Adaptation, Physiological↗
PubMed1992

Population genetics of transposable DNA elements. A Drosophila point of view.

This paper is an attempt to bring together the various, dispersed data published in the literature on insertion polymorphism of transposable elements from various kinds of populations (natural populations, laboratory strains, isofemale and inbred lines). Although the results deal mainly with Drosophila, data on other organisms have been incorporated when necessary to illustrate the discussion. The data pertinent to the regions of insertion, the rates of transposition and excision, the copy number regulation, and the degree of heterozygosity were analysed in order to be confronted with the speculations made with various theoretical models of population biology of transposable elements. The parameters of these models are very sensitive to the values of the transposable element characteristics estimated on populations, and according to the difficulties of these estimations (population not at equilibrium, particular mutations used to estimate the transposition and excision rates, trouble with the in situ technique used to localize the insertions, undesired mobilization of TEs in crosses, spontaneous genome resetting, environmental effects, etc.) it cannot be decided accurately which model better accounts for the population dynamics of these TEs. Tendencies, however, emerge in Drosophila: the copia element shows evidence for deficiency of insertions on the X chromosomes, a result consistent with selection against mutational effects of copia insertions; the P element repartition does not significantly deviate from the neutral assumption, in spite of a systematic copy number of insertions higher on the X than on the autosomes. Data on other elements support either the neutral model of TE containment, neither of the two models, or both. Prudence in conclusion should then be de rigueur when dealing with such kind of data. Finally the potential roles of TEs in population adaptation and evolution are discussed.

Animals↗
PubMed1980

Optimal strategies in immunology III. The IgM-IgG switch.

During a primary immune response generally two classes of antibody are produced, immunoglobulin M (IgM) and immunoglobulin G (IgG). It is currently thought that some lymphocytes which initially produce IgM switch to the production of IgG with the same specificity for antigen. During a secondary immune response IgG is the predominant antibody made throughout the response. In this paper we address the question of why such apparently complicated modes of response should have been adapted by evolution. We construct mathematical models of the immune response to growing antigens which incorporate complement dependent cell lysis. By comparing the times required to eliminate antigen we show that under certain conditions it is advantageous for an animal to switch some of its lymphocytes from IgM to IgG production during a primary response, but yet to secrete only IgG during a secondary response. The sensitivity of such a conclusion to parameter variations is studied and the biological basis and implications of our models are fully discussed.

Animals↗
PubMed1979

The diversity of marine sterols and the role of algal bio-masses; from facts to hypothesis.

Modern analytical methods have revealed the great variety of marine sterols, which possess many different side chains and unsaturation patterns. Such biochemical transformations require well-defined mechanistic pathways, and there must be some 'Raison d'Etre' for a situation which has withstood evolution and adaptive changes. However, in this area, insufficient and sometimes not very substantial experimental work has made it difficult to see correlations, and hence to form a solid hypothesis. A review is now presented in which the molecules dissolved in sea water, or found in marine organisms are considered with particular reference to algal production, and to the bio-ecological significance of the main sterols.

Animals↗
PubMed2000

FORUM: A Context for Participation in Sustainable Development.

/ The relevant literature is abound with different definitions for sustainability, but the most meaningful definition is set within an evolutionary framework. Mechanistic and evolutionary frameworks for sustainable development are discussed. Evolution and adaptation are characteristics of complex adaptive systems, and a new understanding of sustainable development can be gleaned by using the complex adaptive systems framework. This approach to sustainable development issues implicitly requires proactive involvement by the public. This paper supports that bottom-up participation needs to be nurtured. Appropriate processes to enable participation need to be designed and implemented.

Journal Article↗
PubMed2005

Two phylogenetically highly distinct beta-tubulin genes of the basidiomycete Suillus bovinus.

Genes tubb1 and tubb2 which encode beta-tubulins 1 and 2, respectively, were characterised from the ectomycorrhizal basidiomycete Suillus bovinus. The two beta-tubulins are surprisingly divergent, with the lowest known sequence identity (60%) in any single fungal species. Comparative analysis showed that beta-tubulin 1 and the intron distribution within the tubb1 gene resemble the other beta-tubulins. beta-Tubulin 2, in contrast, is the most divergent fully described fungal beta-tubulin and the gene contains at least 21 introns, which is the largest amount known for any beta-tubulin gene. Despite this divergence, both genes are constitutively expressed in the functional compartments of the mycorrhizosphere and in pure cultures. Transcription of tubb1 is about 2.4 times higher than that of tubb2; and this difference is also seen at the translation level. Evidence suggested that phosphorylation may be the main post-translational modification of both beta-tubulins. The putative GTP-binding site residues of beta-tubulin 1 match crystallised pig beta-tubulin residues, while five of the nine differences in beta-tubulin 2 match the pig alpha-tubulin GTP-site, suggesting the presence of adaptive sequence evolution. In a Bayesian analysis, beta-tubulin 1 joins the other basidiomycete sequences, while beta-tubulin 2 loosely associates with the group of divergent ascomycete sequences without any clear relative among the known full-length fungal beta-tubulin sequences.

Amino Acid Sequence↗
PubMed2005

Element profiles and growth in Zn-sensitive and Zn-resistant Suilloid fungi.

Zn pollution has triggered evolution for adaptive Zn tolerance in populations of Suilloid ectomycorrhizal fungi. The objectives of this study were to determine differential physiological responses that are linked to the Zn tolerance trait and to obtain more insight in the general mechanism responsible for the differential growth in Zn-enriched medium. Therefore, we identified intrinsic growth rates and element profiles in Zn-sensitive and Zn-tolerant genotypes. Isolates from Zn-polluted and unpolluted sites were exposed in vitro to increasing Zn(2+) stress. The Zn concentration which inhibits growth by 50% (EC(50)) was determined, and element (Zn, Fe, Mn, Cu, Mg, Ca and P) profiles in the mycelia were analysed. The intraspecific variation in growth rate and nutrient content of the in vitro grown mycelia is great and was not reduced in Zn-tolerant populations. The Zn resistance was not correlated to the intrinsic mycelial growth rate of the isolates or to the concentrations of the elements analysed, except for Zn. At low external Zn, Zn-resistant genotypes had lower Zn concentrations than sensitive isolates. At high external Zn, the differential Zn accumulation pattern between resistant and sensitive isolates became very prominent. Zn-exclusion mechanisms are most likely involved in the naturally selected adaptive Zn resistance. Other mechanisms of Zn detoxification such as sequestration of Zn on cell wall compounds or intracellular chelation and/or compartmentation are probably active but cannot explain the differential Zn sensitivity of the isolates.

Antifungal Agents↗
PubMed2005

Call recognition in chicks of the Australian brush-turkey (Alectura lathami).

Most birds rely on imprinting and experience with conspecifics to learn species-specific recognition cues. Australian brush-turkeys (Alectura lathami) do not imprint and form no bonds with parents. They hatch asynchronously, disperse widely and meet juvenile conspecifics at an unpredictable age. Nevertheless, in captivity, hatchlings respond to other chicks. A recent study, which involved the use of robotic models, found that chicks prefer to approach robots that emit specific visual cues. Here, we evaluated their response to acoustic cues, which usually play an important role in avian social cognition. However, in simultaneous choice tests, neither 2-day-old nor 9-day-old chicks preferred the choice arm with playback of either chick or adult conspecific calls over the arm containing a silent loudspeaker. Chicks of both age classes, however, scanned their surroundings more during chick playback, and the response was thus consistent in younger and older chicks. We also presented the chicks with robotic models, either with or without playback of chick calls. They did not approach the calling robot more than they did the silent robot, indicating that the combination of visual and acoustic cues does not evoke a stronger response. These results will allow further comparison with species that face similar cognitive demands in the wild, such as brood parasites. Such a comparative approach, which is the focus of cognitive ecology, will enable us to further analyse the evolution and adaptive value of species recognition abilities.

Animal Communication↗
PubMed2005

Quantitative trait loci and the study of plant domestication.

Plant domestication ranks as one of the most important developments in human history, giving human populations the potential to harness unprecedented quantities of the earth's resources. But domestication has also played a more subtle historical role as the foundation of the modern study of evolution and adaptation. Until recently, however, researchers interested in domestication were limited to studying phenotypic changes or the genetics of simple Mendelian traits, when often the characters of most interest--fruit size, yield, height, flowering time, etc.--are quantitative in nature. The goals of this paper are to review some of the recent work on the quantitative genetics of plant domestication, identify some of the common trends found in this literature, and offer some novel interpretations of the data that is currently available.

Breeding↗
PubMed2026

Engineering Bacillus Subtilis for Efficient Biosynthesis of Riboflavin: Current Knowledge and Future Perspectives.

Riboflavin is an essential water-soluble vitamin that serves as a precursor for the biosynthesis of the flavin cofactors FMN and FAD, which play pivotal roles in numerous redox and energy metabolism reactions. With the growing global demand for sustainable vitamin production, microbial fermentation has become an attractive alternative to chemical synthesis due to its environmental and economic advantages. Among microbial hosts, Bacillus subtilis has emerged as a leading cell factory for riboflavin production owing to its GRAS status, well-characterized genetics, and efficient protein secretion system. This review provides a comprehensive overview of recent advances in metabolic engineering strategies to enhance riboflavin biosynthesis in B. subtilis. Key topics include strengthening biosynthetic and precursor pathways, relieving feedback inhibition, balancing metabolic flux and cell growth, employing adaptive laboratory evolution, and utilizing omics-guided optimization and 13C metabolic flux analysis. Moreover, the integration of synthetic biology tools such as riboswitch engineering, regulatory element design, and high-throughput screening has significantly accelerated strain improvement. Despite remarkable progress, challenges remain in achieving precise regulatory control, optimizing multi-gene expression, and enhancing genome integration efficiency. Future research combining multi-omics data, synthetic regulatory design, and machine learning-driven predictive modeling is expected to further advance the development of intelligent B. subtilis cell factories. However, the practical implementation of these systems remains constrained by the metabolic burden of overproduction and the lack of universal regulatory models that can predict strain performance across varying industrial scales.

Bacillus subtilis↗
PubMed1994

Training and continuous education of clinical laboratory technologists and technicians.

The profession of clinical laboratory technologist has undergone profound changes in the last decades and scientific as well as technological advancement will cause further continued evolution. Therefore, adaptability to a rapidly evolving environment and willingness to continuously update knowledge as well as skills seem to be the most important demands confronting technologists. I compare the current training of clinical laboratory technologist in industrialized countries with emerging educational schemes, which include curricula based on national requirements comprising a total of 3-4 years of formal lectures and practical training.

Chemistry, Clinical↗
PubMed1986

The origin of adaptation and dyssymmetry in the evolution of autocatalytic systems.

The evolution of open systems that include several autocatalytic processes in parallel or in series is mathematically analyzed. For the case of two reactions in parallel, such systems progressively and finally select the reaction pathway which involves the better autocatalyst. The effect of parameters influencing the rate of this evolution is discussed. Where catalysts are strictly equivalent, e.g. enantiomers in a symmetrical surrounding, the evolution is amplified by fluctuations and retains finally only one reaction pathway, if the autocatalytic rates of reactions are more than proportional to the catalyst concentrations. When including two reactions in series, these open systems are also able to give oscillations.

Catalysis↗
PubMed1994

Epidemiology and the web of causation: has anyone seen the spider?

'Multiple causation' is the canon of contemporary epidemiology, and its metaphor and model is the 'web of causation.' First articulated in a 1960 U.S. epidemiology textbook, the 'web' remains a widely accepted but poorly elaborated model, reflecting in part the contemporary stress on epidemiologic methods over epidemiologic theories of disease causation. This essay discusses the origins, features, and problems of the 'web,' including its hidden reliance upon the framework of biomedical individualism to guide the choice of factors incorporated in the 'web.' Posing the question of the whereabouts of the putative 'spider,' the author examines several contemporary approaches to epidemiologic theory, including those which stress biological evolution and adaptation and those which emphasize the social production of disease. To better integrate biologic and social understandings of current and changing population patterns of health and disease, the essay proposes an ecosocial framework for developing epidemiologic theory. Features of this alternative approach are discussed, a preliminary image is offered, and debate is encouraged.

Causality↗
PubMed1990

Purification and characterization of bilirubin UDP-glucuronyltransferase from the liver of eel, Anguilla japonica.

1. The enzyme bilirubin uridine diphosphate glucuronyltransferase (UDPGT) was purified and characterized from the liver of eel, Anguilla japonica. 2. The molecular weight of the enzyme was 88,000. 3. The optimal working pH of the enzyme was 7.5-8.0. The optimal working temperature of the enzyme was around 46 degrees C. 4. The Km of bilirubin and uridine diphosphate glucuronic acid for this enzyme was 1.6 mM and 1.8 mM respectively. 5. The concentration of bilirubin did not show any significant effect of inhibition on this enzyme up to 3.3 mM. 6. Since this is the first time UDPGT has been purified and characterized from poikilothermic aquatic animals, it provided interesting information on evolution and adaptation of this enzyme when compared to that of mammals.

Anguilla↗
PubMed1993

Animal cells in turbulent fluids: details of the physical stimulus and the biological response.

Animal cells in large scale bioreactors are subjected to a variety of fluid forces for which they are not adapted by evolution. In severe cases the result is cell death, but under more modest agitation conditions an increasing number of nonlethal responses affecting growth rate, metabolism, and product formation have been reported. The forces causing these responses have not been characterized because particle-turbulence interactions are extremely complex. The current understanding of the microscopic structure of turbulence in an infinite liquid and in boundary layers shows that an average shear stress alone is not likely to be adequate to describe the bioreactor environment. Combining knowledge of the physical stimuli and the biological responses will lead to better ways of limiting cell damage and possibly to using physical stresses as a means of specifically modifying cell behavior.

Journal Article↗
PubMed2005

International trends in the treatment of cleft lip and palate.

This article presents a contemporary (2004) survey of the methods and timing used in the care of cleft patients. The results are compared, when possible, with those of a similar study published by the lead author in 1998 and with those of the Eurocleft Project that took place from 1996 to 2000. Although very little uniformity is seen in the care of cleft patients, this comparison demonstrates a significant degree of agreement on many aspects of cleft care and a continuing process of adaptation and evolution in the field of cleft lip and palate surgery.

Child↗
PubMed2004

T cell receptor recognition motifs govern immune escape patterns in acute SIV infection.

Escape from adaptive T cell immunity through transmutation of viral antigenic structure is a cardinal feature in the pathogenesis of SIV/HIV infection and a major obstacle to antiretroviral vaccine development. However, the molecular determinants of this phenomenon at the T cell receptor (TCR)-antigen interface are unknown. Here, we show that mutational escape is intimately linked to the structural configuration of constituent TCR clonotypes within virus-specific CD8(+) T cell populations. Analysis of 3416 SIV-specific TCR sequences revealed that polyclonal T cell populations characterized by highly conserved TCRB CDR3 motifs were rendered ineffectual by single residue mutations in the cognate viral epitope. Conversely, diverse clonotypic repertoires without discernible motifs were not associated with viral escape. Thus, fundamental differences in the mode of antigen engagement direct the pattern of adaptive viral evolution. These findings have profound implications for the development of vaccines that elicit T cell immunity to combat pathogens with unstable genomes.

Acute Disease↗