Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “Genetic Structures”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,009 records · Page 56Linked to original sources
PubMedDate not supplied

Genetic structure of Plasmodium vivax isolates in India.

Variations in the allelic composition of glucose phosphate isomerase (GPI), NADP-dependent glutamate dehydrogenase (GDH) and adenosine deaminase (ADA) enzyme systems of Plasmodium vivax were observed in isolates of Indian origin in 1985-1993. No significant difference was observed in allelic frequencies in different years. The data indicated random distribution of GPI, GDH and ADA alleles among the isolates, suggesting that loci for these enzymes were not linked. A high proportion of the isolates comprised at least 2 genetically distinct clones, the mean number of clones per isolate being 1.4. There was no significant difference in the number of oocysts in Anopheles stephensi fed on uniclonal and multiclonal isolates. No difference was observed in the proportions of uniclonal and multiclonal isolates during low and high transmission periods.

Adenosine Deaminase↗
PubMed1996

Genetic structure of Aedes albifasciatus (Diptera:Culicidae) from a marsh ecosystem in Córdoba, Argentina.

Allozymic variability was analyzed for 8 samples of the floodwater mosquito Aedes albifasciatus (Macquart) obtained in October and November 1993 from marsh and pasture habitats along the Mar Chiquita ecosystem in central Argentina. Expected mean heterozygosity among 17 loci was low. Fls values were negative for all polymorphic loci, and mean FST values were low, indicating high levels of gene exchange and the absence of subpopulations within the 25-km-wide study area. Genetic homogeneity throughout the area suggests that outcrossing occurs frequently as a result of dispersal among sampled sites.

Aedes↗
PubMed2001

Population genetic structure and competence as a vector for dengue type 2 virus of Aedes aegypti and Aedes albopictus from Madagascar.

Starch gel electrophoresis was used to assess the polymorphism of 7 isoenzymes in single mosquitoes (field-collected F0 or F1 generation) for Aedes albopictus (8 strains) from northern Madagascar. Mosquitoes of the F2 generation (3 strains of Aedes aegypti and 10 strains of Ae. albopictus) were tested for oral susceptibility to dengue type 2 virus. Aedes aegypti was less susceptible to viral infection than Ae. albopictus. The genetic differentiation was less high between Ae. albopictus populations collected in agglomerations connected by highly frequented roads, indicating that human ground transportation favors mosquito dispersal. These results have implications for the ecology, pattern of migration, and relative importance in epidemic transmission of dengue viruses between the 2 Aedes species.

Aedes↗
PubMed2005

Complex genetic structure of the rabies virus in Bangkok and its surrounding provinces, Thailand: implications for canine rabies control.

Dog vaccination and population management have been suggested as priorities in attempts at disease control in canine rabies-endemic countries. Budget limitations and the complexity of social, cultural and religious variables have complicated progress in the developing world. In Bangkok, Thailand, an intensive canine vaccination and sterilization programme has been in place since November 2002. Our objective was to determine if the rabies virus could be mapped according to its genetic variations and geographical location on the small localized scale of Bangkok and its surrounding provinces. Phylogenetic characterization of 69 samples from Bangkok and five neighbouring and two remote provinces, by limited sequence analysis of the rabies virus nucleoprotein gene, distinguished six different clades. Rabies viruses of four clades were intermixed in Bangkok and in the surrounding highly populated regions whereas the other two clades were confined to rural and less populated provinces. Such a complex pattern of gene flow, particularly in Bangkok, may affect the outcome of canine control programmes.

Animals↗
PubMed2000

RAPD variation and population genetic structure in Prunus mahaleb (Rosaceae), an animal-dispersed tree.

We examined the patterns of random amplified polymorphic DNA (RAPD) variation among seven Prunus mahaleb (Rosaceae) populations extending over approximately 100 km2 to examine local differentiation in relation to spatial isolation due to both geographical distance and differences in elevation. No less than 51. 4% of the RAPD loci were polymorphic, but very few were fixed and among-population variation accounted for 16.46% of variation in RAPD patterns. Mean gene diversity was 0.1441, with mean Nei's genetic diversity for individual populations ranging between 0.089 and 0.149. Mean GST value across loci was 0.1935 (range, 0.0162-0.4685), giving an average estimate for Nm of 1.191. These results suggest extensive gene flow among populations, but higher GST and lower Nm values relative to other outcrossing, woody species with endozoochorous dispersal, also suggest a process of isolation by distance. The combined effect of both geographical and elevation distances and nonoverlapping flowering and fruiting phenophases on the GST matrix was partially significant, revealing only marginal isolation of the P. mahaleb populations. The matrix correlation between estimated Nm values among populations and the geographical + elevation distance matrices (r = -0.4623, P = 0.07), suggests a marginal trend for more isolated populations to exchange less immigrants. Long-distance seed dispersal by efficient medium-sized frugivorous birds and mammals is most likely associated to the high levels of within-population genetic diversity. However, vicariance factors and demographic bottlenecks (high postdispersal seed and seedling mortality) explain comparatively high levels of local differentiation.

Animals↗
PubMed2005

Genetic structure and gene flow among Aedes aegypti (Diptera: Culicidae) populations from central Thailand.

Isozymes from five wild-caught populations of Aedes aegypti (L.) were compared using starch gel electrophoresis to estimate rates of gene flow between and among geographically close mosquito populations. Ae. aegypti were collected from five different locations in Bangkok, Thailand. One collection was obtained from central Bangkok (Huai-Khwang); the other four samples were obtained from surrounding areas (Districts Latkrabang, Ratburana, Laksi, and Bangkok Noi). Based on 24 loci (17 enzyme systems), only minor genetic differentiation was observed between all five populations. The highest percentage of polymorphic loci (34.3) was observed from the central Bangkok population; the least percentage of polymorphism (20.0) was seen from Laksi (north Bangkok). This study indicates that a large effective migration rate exists among all five populations. No fixed genetic differences were detected.

Aedes↗
PubMed1986

Genetic structure of the endogenous proviruses and expression of the gag gene in Brown Leghorn chickens.

Seven loci of endogenous proviruses were detected in the genome of Brown Leghorn chickens. Sets of endogenous proviruses in DNA of the chicken embryos examined were identified by blot hybridization with 32P-labelled DNA of RSV and EcoRI restriction endonuclease digestion. Comparison of the results showed that only one locus (A) of endogeneous provirus was associated with a gs+ phenotype as determined by the immunoperoxidase reaction and antibodies against gag gene products of RSV. Restriction endonuclease analysis with HindIII, BamHI and SacI revealed that proviruses A and F in Brown Leghorn chickens correspond to loci ev-3 and ev-6, respectively, in White Leghorn chickens. Other loci (B, C, D, E, and X) were designated ev-22, ev-23, ev-24, ev-25, ev-26, respectively. None of these loci expressed infectious virions. The structure of most of the endogenous proviruses examined is considerably different from the genome of the endogenous chicken virus RAV-O. The difference in structure may be one possible cause of the absence of endogenous provirus expression.

Animals↗
PubMed2001

Genetic structure and relationships among steelhead trout (Oncorhynchus mykiss) populations in British Columbia.

Steelhead trout, Oncorhynchus mykiss (the anadromous form of rainbow trout), are declining over much of their range around the Pacific rim. We nondestructively collected tissue samples from 494 adult steelhead from eight tributaries and two mainstem river sites within three watersheds in northern British Columbia, Canada. We scored allele size for six highly polymorphic microsatellite DNA loci and provide primer sequences and polymerase chain reaction conditions for five of these loci for the first time. The populations were significantly genetically differentiated (theta = 0.039; 95% confidence = 0.030-0.053). AMOVA showed that most of the genetic variation was at the individual level (95.6%), although significant genetic variation existed at the tributary level (3.09%) and watershed level (1.31%). The calculated unbiased genetic distances were positively correlated with geographical distance within watersheds (P < 0.01; r(2)=0.35) indicating probable genetic equilibrium. Tributary populations in two of the watersheds were not as genetically divergent as would be expected given their large geographical separation. Cross-headwater transfers of fish within relatively recent history are the most likely explanation of this anomaly. Seven of the eight tributary populations fit a regression line of mean heterozygosity vs. rearing habitat area. The one anomalous population had a much lower heterozygosity than expected based on the linear regression, and may thus be the population of greatest conservation concern.

Alleles↗
PubMed1995

Genetic structure of the population of Cabo Verde (west Africa): evidence of substantial European admixture.

The population of Cabo Verde was founded in the fifteenth century (1462), on the basis of slaves brought from the West African coast and a few Europeans, mainly from Portugal. The polymorphism of six red cell enzymes (ADA, AK1, ALAD, ESD, GLO1, and PGD) and ten plasma proteins (AHSG, BF, F13A, F13B, GC, HP, ORM, PLG, TBG, and TF) was studied in a sample of 268 individuals from Cabo Verde (West Africa). There is no statistical evidence of genetic heterogeneity between the two groups of islands which constitute the archipelago, Barlavento and Sotavento. The gene frequency distribution observed in Cabo Verde differs, in many markers, from that of West African populations, suggesting an important European influence. The proportion of Caucasian genes in the population of Cabo Verde has been calculated to be M = 0.3634 +/- 0.0510, and the considerable dispersion of the locus-specific admixture estimates seems to indicate random drift has also played a role in the evolution of the allele frequencies in the archipelago. Partition of the variance of the mean estimate in evolutionary and sampling variance shows the evolutionary variance is more than ten times higher than the sampling variance. When dendrograms are constructed on the basis of different genetic distances, the population of Cabo Verde clusters with Afro-Americans, forming a different group from the populations of the African continent. This is interpreted as a consequence of the importance of Caucasian admixture both in Afro-Americans and in the population of Cabo Verde.

Africa, Western↗
PubMed1991

The genetic structure of natural populations of Drosophila melanogaster. XXII. Comparative study of DNA polymorphisms in northern and southern natural populations.

Restriction map variation in four gene regions (Adh, Amy, Pu and Gpdh) was surveyed for 86 second chromosomes from northern (Aomori) and southern (Ogasawara) Japanese populations of Drosophila melanogaster (43 chromosomes from each population). The regions examined cover a total of 62 kilobases. Estimates of nucleotide diversity (pi) were approximately constant across the gene regions and populations examined. The distribution of restriction site polymorphisms was compatible with the expectation from the neutral mutation-random genetic drift hypothesis, but insertion/deletion polymorphisms were not consistent with it. While the two populations shared a majority of restriction site polymorphisms, frequencies of individual restriction site variants were significantly different between the two populations at 7 out of 35 segregating sites. In addition, an insertion in the Amy region was found in 15 chromosomes from the Ogasawara sample but absent in the Aomori sample. A considerable difference was observed in the number of rare insertions and deletions between the two populations. The numbers of aberrations uniquely represented were 16 in the Ogasawara sample and only 3 in the Aomori sample. These findings suggest that the two populations were differentiated from each other to some degree by means of random genetic drift and/or other factors.

Alcohol Dehydrogenase↗
PubMed1994

Rhesus polymorphism in New Caledonia. I. Genetic structures of three local populations.

Rhesus phenotypes are presented for a total of 2,052 individuals belonging to three sympatric populations of New Caledonia: Kanaks (Melanesians), Wallisians (Polynesians) and Europeans born in New Caledonia. The maximum-likelihood gene frequency estimations reveal a significant deviation from Hardy-Weinberg equilibrium for the Kanak and Wallisian samples. As suggested on statistical grounds, this disequilibrium can be attributed to antigene mistypings, frequently encountered for this system. This hypothesis leads to new estimations of Rhesus haplotype frequencies for the two samples. They reveal a high degree of genetic similarity (89.6%) between Kanaks and Wallisians, with little or no evidence of admixture with Europeans from New Caledonia. The latter are genetically close to southern Europeans in having a very high R1 frequency.

Adolescent↗
PubMed1999

Genetic structure of a Sakha population from Siberia and ethnic affinities.

The red cell enzymes ACP1, ESD, GLO1, PGM1 and RDS and the serum proteins GC, HP, PI, and TF were determined for samples of 150 and 144 Sakha, respectively. The Sakha, a Turkic-speaking population, inhabit the Sakha-Yakutia Republic in northeastern Siberia. High gene frequencies were found for ACP1*A, GLO1*1 and GC*1F, whereas no P1*S or P1*Z alleles were found. In addition, 1 heterozygous phenotype with ACP1*C and 2 heterozygous phenotypes with ESD*7 were found. The genetic distance measures show close affinities of the Sakha population to Buryats (especially Western Buryats), Mongols, and Evenks, whereas the genetic distance to Turkic-speaking Altay and Tuvan populations is great.

Blood Proteins↗
PubMed1998

Population genetic structure of North Atlantic, Mediterranean Sea and Sea of Cortez fin whales, Balaenoptera physalus (Linnaeus 1758): analysis of mitochondrial and nuclear loci.

Samples were collected from 407 fin whales, Balaenoptera physalus, at four North Atlantic and one Mediterranean Sea summer feeding area as well as the Sea of Cortez in the Pacific Ocean. For each sample, the sex, the sequence of the first 288 nucleotides of the mitochondrial (mt) control region and the genotype at six microsatellite loci were determined. A significant degree of divergence was detected at all nuclear and mt loci between North Atlantic/Mediterranean Sea and the Sea of Cortez. However, the divergence time estimated from the mt sequences was substantially lower than the time elapsed since the rise of the Panama Isthmus, suggesting occasional gene flow between the North Pacific and North Atlantic ocean after the separation of the two oceans. Within the North Atlantic and Mediterranean Sea, significant levels of heterogeneity were observed in the mtDNA between the Mediterranean Sea, the eastern (Spain) and the western (the Gulf of Maine and the Gulf of St Lawrence) North Atlantic. Samples collected off West Greenland and Iceland could not be unequivocally assigned to either of the two areas. The homogeneity tests performed using the nuclear data revealed significant levels of divergence only between the Mediterranean Sea and the Gulf of St Lawrence or West Greenland. In conclusion, our results suggest the existence of several recently diverged populations in the North Atlantic and Mediterranean Sea, possibly with some limited gene flow between adjacent populations, a population structure which is consistent with earlier population models proposed by Kellogg, Ingebrigtsen, and Sergeant.

Animals↗
PubMed1993

Structure--anticancer and structure--genetic activity relationships of homo-aza-steroidal esters of N,N-bis(2-chloroethyl)aminocinnamic acid isomers.

Four steroidal lactams of the A- and D-rings were used for the esterification in the C-3 or C-17 positions, respectively, of their nuclei with the N,N-bis(2-chloroethyl)aminocinnamic acid isomers. The condensation reaction of the hydroxylic group of the steroidal lactams with each mustard was effected in dichloromethane in the presence of the catalyst p-dimethylaminopyridine and dicyclohexylcarbodiimide as dehydrating agent. The esters were obtained in pure form after column chromatography, and their structures were verified and confirmed by analytical methods (IR and UV spectra). The 12 esters were tested in vivo against P388, L1210 leukemias, Ehrlich ascites tumor, and melanoma B16. The esters 3 alpha-hydroxy-13 alpha-amino-13,17-seco-5 alpha-androstan-17- oic-13,17-lactam-o,m,p-N,N-bis(2-chloroethyl)aminocinnamates, in which the alkylating agents are linked to the modified steroid in the axial position, are inactive in the above experimental animal tumor systems. The effect of the homo-aza-steroidal esters of N,N-bis(2-chloroethyl)aminocinnamic acid isomers on the incorporation of radioactive precursors into DNA, RNA, and proteins of L1210, P388 leukemias, Ehrlich ascites tumor, and baby hamster kidney cells was investigated. Higher inhibitory effects on the incorporation of the radioactive precursors was obtained with the ortho-derivatives, yielding > 40% inhibition of thymidine incorporation in all tumor lines tested. The effect of four esters in which the m- N,N-bis(2-chloroethyl)aminocinnamic acid is linked to the modified steroids on sister chromatid exchanges in human lymphocyte culture was investigated.

Alkylating Agents↗
PubMed2001

Y chromosome binary markers to study the high prevalence of males in Sardinian centenarians and the genetic structure of the Sardinian population.

We have analyzed a sample of 40 centenarians and 116 young controls from Sardinia, with a set of new Y chromosome binary markers, to evaluate if Y chromosome genes are involved in the high prevalence of males among centenarian Sardinians (1/2 vs. 1/4 in other populations studied). The results indicate that none of the seven lineages that account for >97% of the Y chromosome diversity in Sardinia provide an advantage with respect to the extreme longevity. However, our results, although based on the male-specific Y chromosome polymorphisms, give a clear profile of the pattern of genetic variability in Sardinia. Indeed they indicate that the Sardinian population had two main founder populations that have evolved in isolation for at least the last 5,000 years. These findings set the stage for future studies on longevity and other complex traits in Sardinia.

Aged↗
PubMed2003

Aedes aegypti in south Vietnam: ecology, genetic structure, vectorial competence and resistance to insecticides.

In Vietnam, dengue hemorrhagic fever has been detected since the 1950s. In Southeast Asia, urban centers expanded rapidly in an uncontrolled and unplanned way. The Aedes aegypti populations and dengue viruses thrived in these new ecological and demographic settings. The result of these changes was a greatly extended geographic distribution, increased densities of Ae. aegypti and the maintenance of the four dengue serotypes leading to a dramatic increase in dengue transmission. To assess the role of the vector in the changing pattern of the disease in Southeast Asia, we studied the ecology of Ae. aegypti, genetic differentiation, variability in competence as a vector for dengue 2 virus, and resistance to insecticides.

Aedes↗