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Extinction and the loss of functional diversity.

Although it is widely thought to influence ecosystem processes, there is little consensus on an appropriate measure of functional diversity. The two major perspectives, to date, are to assume that every species is functionally unique, or to assume that some species are functionally identical, such that functional groups exist. Using a continuous measure of functional diversity (FD) derived from the quantitative functional traits of species, we show that the loss of functional diversity from six natural assemblages was rapid compared with rates of loss from comparable simulated assemblages. Loss of FD occurred faster than loss of functional-group diversity in four of the six natural assemblages. Patterns of functional-group diversity loss depended on the number of functional groups and the number of species in an assemblage. Extinctions that occurred first for species with particular traits (e.g. low leaf nitrogen concentration, deep roots and large body size) caused greater loss of FD than expected by chance in four of the six natural assemblages. In two real assemblages, these trait-dependent extinctions had more severe effects on FD than our simulated worst-case extinction scenario. These data suggest that conserving a large proportion of the functional traits of species requires conserving a large proportion of all species.

Animals↗

Competitive fates of bacterial social parasites: persistence and self-induced extinction of Myxococcus xanthus cheaters.

Cooperative biological systems are susceptible to disruption by cheating. Using the social bacterium Myxococcus xanthus, we have tested the short-term competitive fates of mixed cheater and wild-type strains over multiple cycles of cooperative development. Cheater/wild-type mixes underwent several cycles of starvation-induced multicellular development followed by spore germination and vegetative population growth. The population sizes of cheater and wild-type strains in each pairwise mixture were measured at the end of each developmental phase and each growth phase. Cheater genotypes showed several distinct competitive fates, including cheater persistence at high frequencies with little effect on total population dynamics, cheater persistence after major disruption of total population dynamics, self-extinction of cheaters with wild-type survival, and total population extinction. Our results empirically demonstrate that social exploitation can destabilize a cooperative biological system and increase the risk of local extinction events.

Biological Evolution↗

How species respond to multiple extinction threats.

It is well established that different species vary in their vulnerability to extinction risk and that species biology can underpin much of this variation. By contrast, very little is known about how the same species responds to different threat processes. The purpose of this paper is therefore twofold: to examine the extent to which a species' vulnerability to different types of threat might covary and to explore the biological traits that are associated with threat-specific responses. We use an objective and quantitative measure of local extinction risk to show that vulnerability to local population decline in primates varies substantially among species and between threat types. Our results show that a species' response to one threat type does not predict its response to others. Multivariate analyses also suggest that different mechanisms of decline are associated with each type of threat, since different biological traits are correlated with each threat-specific response. Primate species at risk from forestry tend to exhibit low ecological flexibility, while those species vulnerable to agriculture tend to live in the canopy and eat low-fruit diets; in further contrast, primates at risk from hunting tend to exhibit large body size. Our analyses therefore indicate that a species' vulnerability to local extinction can be highly variable and is likely to depend on both threat type and biology.

Agriculture↗

The causes of extinction.

A species may go extinct either because it is unable to evolve rapidly enough to meet changing circumstances, or because its niche disappears and no capacity for rapid evolution could have saved it. Although recent extinctions can usually be interpreted as resulting from niche disappearance, the taxonomic distribution of parthenogens suggests that inability to evolve may also be important. A second distinction is between physical and biotic causes of extinction. Fossil evidence for constant taxonomic diversity, combined with species turnover, implies that biotic factors have been important. A similar conclusion emerges from studies of recent introductions of predators, competitors and parasites into new areas. The term 'species selection' should be confined to cases in which the outcome of selection is determined by properties of the population as a whole, rather than of individuals. The process has been of only trivial importance in producing complex adaptations, but of major importance in determining the distribution of different types of organisms. An adequate interpretation of the fossil record requires a theory of the coevolution of many interacting species. Such a theory is at present lacking, but various approaches to it are discussed.

Animals↗

The astronomical pulse of global extinction events.

The linkage between astronomical cycles and the periodicity of mass extinctions is reviewed and discussed. In particular, the apparent 26 million year cycle of global extinctions may be related to the motion of the solar system around the galaxy, especially perpendicular to the galactic plane. The potential relevance of Milankovitch cycles is also explored in the light of current evidence for the possible causes of extinction events over a geological timescale.

Animals↗

Extinction of tyrosine aminotransferase gene activity in somatic cell hybrids involves modification and loss of several essential transcriptional activators.

Extinction is defined as the loss of cell type-specific gene expression that occurs in somatic cell hybrids derived by fusion of cells with dissimilar phenotypes. To explore the basis of this dominant-negative regulation, we have studied the activities of the control elements of the liver-specific gene encoding tyrosine aminotransferase (TAT) in hepatoma/fibroblast hybrid crosses. We show that extinction in complete somatic cell hybrids is accompanied by the loss of activity of all known cell type-specific control elements of the TAT gene. This inactivity is the result of first, lack of expression of genes coding for the transcriptional activators HNF4 and HNF3 beta and HNF3 gamma, which bind to essential elements of the enhancers; and second, loss of in vivo binding and activity of ubiquitous factors to these enhancers, including CREB, which is the target for repression by the tissue-specific extinguisher locus TSE1. Complete extinction of TAT gene activity is therefore a multifactorial process affecting all three enhancers controlling liver-specific and hormone-inducible expression. It results from lack of activation, rather than active repression, and involves both post-translational modification and loss of essential transcriptional activators.

Base Sequence↗

Extinction effect and Borrmann effect of resonant dynamical scattering in the Bragg case.

In the Bragg case, X-ray beams suffer from anomalous absorption due to extinction effects without photo-absorption and are localized in the surface when X-ray total reflection occurs around an exact Bragg angle from a perfect crystal. On the other hand, the Borrmann effect due to anomalous transmission occurs in a thin perfect crystal with photo-absorption under a proper condition. There is a clear distinction between the extinction effect and the Borrmann effect. It is found that it is possible to separate the Borrmann effect from the extinction effect when the real part of the atomic scattering factor is zero. The calculated rocking curves agree well with the measured ones around the Ge K-absorption edge of the Ge 844 reflection.

Journal Article↗

Secondary extinction and diffraction behaviors in cylindrical crystals.

The X-ray and neutron diffraction properties in absorbing cylindrical crystals are systematically explored within the framework of transfer equations and the kinematic diffraction approximation. The calculated power ratio distribution, the integrated reflection power ratio and the secondary-extinction factor y( micro ) are expressed as functions of the Bragg angle theta(B), the reduced radius sigma(0)rho = tau(0) and the ratio of absorption coefficient to diffraction cross section micro /sigma(0) = xi(0). Numerical solutions were obtained for all theta(B) (0-90 degrees ) and samples with tau(0) from 0 to 30, and xi(0) from 0 to 25. The relationship between the power ratio distribution curves, the integrated reflection power ratio and the diffraction geometry of cylindrical crystals is obtained for the first time and analyzed in detail. A dip was found in the curve of the extinction factor y( micro ) against tau(0) for given theta(B) and xi(0), and the position of this minimum shifts toward smaller tau(0) with increasing xi(0) or theta(B). A large decrease of y( micro ) with decreasing theta(B) at low angle appears when micro rho > 3.5 and 25 > xi(0) > 0.2. The rate of change of y( micro ) in this region increases with tau(0). All of this will be important for the refinement of diffraction data. The influence of different kinds of mosaic distributions on the integrated reflection power ratio and the extinction factor was also studied. The transmission coefficients A(*) were calculated using two different methods, and an inaccuracy of these numbers in Vol. II of International Tables for X-ray Crystallography (1972) in the range theta(B) < or = 15 degrees and micro rho > or = 15 was found by comparison.

Journal Article↗

Harvest reserves reduce extinction risk in an experimental microcosm.

Overharvesting by humans threatens a substantial fraction of endangered species. Reserves have recently received enormous attention as a means of better conserving harvested resources, despite limited empirical evidence of their efficacy. We used manipulated microcosms to test whether reserves reduce extinction risk in mobile populations of harvested Tetrahymena thermophila, a ciliate. Here we show that patterns of population distribution inside and outside reserves can be accurately predicted on the basis of simple models of diffusion coupled with logistic controls on local population growth. No extinctions occurred in eight experimental trials with reserves, whereas extinction occurred in seven of eight trials without reserves, as predicted by population viability models based on stochastic population processes. These results suggest that marine reserves may be an effective means of improving long-term viability in heavily harvested fish species.

Animals↗

Addressing data deficiency in classifying extinction risk: a case study of a radiation of Bignoniaceae from Madagascar.

Of the roughly 12,000 known plant species in Madagascar only 3% are found in the IUCN (World Conservation Union) Red List of Threatened Species. We assigned preliminary IUCN categories of threat to the species of a comparatively well-known tribe, Coleeae (Bignoniaceae), which comprises an endemic, species-rich radiation in Madagascar Because the IUCN Red List Categories and Criteria 3.1 discourage the use of the data-deficient category, we developed a novel method for differentiating between range-limited species and poorly sampled species. We used the Missouri Botanical Garden (MBG) gazetteer to determine where other collection efforts had taken place. We drew buffers around each Coleeae locality and determined how many times the surrounding area bad been visited since the last sighting of the specimens by intersecting the buffers with all known botanical localities from the MBG gazetteer We determined that at least 54% of the Coleeae species are threatened with extinction. Assignments of species to this category were often due to predicted future decline within their current area of occupancy and their lack of inclusion within the protected-area network (only 42% of species are known to occur in protected areas). Three species were presumed extinct, and an additional 12 have not been seen in decades. Among the species threatened with extinction, we "rescued" six of them from the data-deficient category by considering both the sample dates and localities of places where they occurred in relation to additional collections that took place in the immediate area. Due to their recent discovery, 15 species remained in the data-deficient category If Coleeae is representative of the Malagasy flora, or at least of other endemic-radiated plant groups, then species loss in Madagascar may be even more extreme than is realized.

Bignoniaceae↗

Measuring changes in articulate brachiopod morphology before and after the Permian mass extinction event: do developmental constraints limit morphological innovation?

The pattern of decreasing disparity has been observed in both the metazoans and metaphytes throughout the Phanerozoic. The pattern is manifest as a decreasing trend in the origination of higher taxa. Currently, two competing evolutionary hypotheses have been proposed to explain this phenomenon: the empty ecospace hypothesis and the developmental constraint hypothesis. To empirically distinguish between these hypotheses, the change in disparity before and after the end-Permian mass extinction event was measured in the articulated brachiopods. The assumption is that ecospace-limiting constraints are removed after mass extinctions revealing the effect of developmental constraints. For each taxon within the group, both continuous and discrete character sets were analyzed. Four different measures of disparity were used to analyze each character suite. Additionally, a separate analysis was performed on a subset of the articulated brachiopods, the rhynchonellids and terebratulids. In most cases investigated, disparity rebounded to comparable levels, with the rhynchonellids and terebratulids showing the largest increase in disparity after the end-Permian extinction, a clear example of an increase in disparity without a significant increase in taxonomic diversity. The results indicate that developmental constraints may not be responsible for the decreasing disparity in this group. The more likely scenario is that increasingly structured ecological guilds have made it much more difficult for large increases in disparity to occur.

Animals↗

Peculiar character of dialyzate ultraviolet extinction spectra as an indicator of nucleic acid metabolism in humans.

UV extinction spectra of effluent dialyzate in the process of hemodialysis and peritoneal dialysis are studied. It is found that they have distinctive individual features unique to each patient. The shape of the spectrum remains virtually invariable for a given subject during the whole period of the study (more than a year) and does not depend on the treatment modality or other factors like sex, age, the stage of chronic renal failure, and concomitant illnesses. Absorption bands in two spectral regions--255 to 265 nm and 288 to 298 nm--account for the unique character of dialyzate spectra. Spectra classification based on the ratio of integral extinctions in these regions are introduced. It is assumed that the shape of the spectrum depends on the relative contents of plasma components. Statistical analysis of individual features of spectra for the groups of patients undergoing hemodialysis (78 people) and peritoneal dialysis (42 people) is carried out. It is revealed that the distribution of patients by the ratio of integral extinctions in the specified spectral regions adheres to the normal law. Presumably individual features of spectra could be related to uric acid and a biochemically unidentified substance with an absorption peak near 260 nm.

Algorithms↗

Impact ejecta layer from the mid-Devonian: possible connection to global mass extinctions.

We have found evidence for a bolide impacting Earth in the mid-Devonian ( approximately 380 million years ago), including high concentrations of shocked quartz, Ni, Cr, As, V, and Co anomalies; a large negative carbon isotope shift (-9 per mil); and microspherules and microcrysts at Jebel Mech Irdane in the Anti Atlas desert near Rissani, Morocco. This impact is important because it is coincident with a major global extinction event (Kacák/otomari event), suggesting a possible cause-and-effect relation between the impact and the extinction. The result may represent the extinction of as many as 40% of all living marine animal genera.

Animals↗

Avian extinction and mammalian introductions on oceanic islands.

The arrival of humans on oceanic islands has precipitated a wave of extinctions among the islands' native birds. Nevertheless, the magnitude of this extinction event varies markedly between avifaunas. We show that the probability that a bird species has been extirpated from each of 220 oceanic islands is positively correlated with the number of exotic predatory mammal species established on those islands after European colonization and that the effect of these predators is greater on island endemic species. In contrast, the proportions of currently threatened species are independent of the numbers of exotic mammalian predator species, suggesting that the principal threat to island birds has changed through time as species susceptible to exotic predators have been driven extinct.

Animals↗

Cope's rule, hypercarnivory, and extinction in North American canids.

Over the past 50 million years, successive clades of large carnivorous mammals diversified and then declined to extinction. In most instances, the cause of the decline remains a puzzle. Here we argue that energetic constraints and pervasive selection for larger size (Cope's rule) in carnivores lead to dietary specialization (hypercarnivory) and increased vulnerability to extinction. In two major clades of extinct North American canids, the evolution of large size was associated with a dietary shift to hypercarnivory and a decline in species durations. Thus, selection for attributes that promoted individual success resulted in progressive evolutionary failure of their clades.

Animals↗

Reduced competition and altered feeding behavior among marine snails after a mass extinction.

Extinction may alter competitive interactions among surviving species, affecting their subsequent recovery and evolution, but these processes remain poorly understood. Analysis of predation traces produced by shell-drilling muricid snails on bivalve prey reveals that species interactions were substantially different before and after a Plio-Pleistocene mass extinction in the western Atlantic. Muricids edge- and wall-drilled their prey in the Pliocene, but Pleistocene and Recent snails attacked prey only through the shell wall. Experiments with living animals suggest that intense competition induces muricid snails to attack shell edges. Pliocene predators, therefore, probably competed for resources more intensely than their post-extinction counterparts.

Animals↗

U/Pb zircon geochronology and tempo of the end-permian mass extinction

The mass extinction at the end of the Permian was the most profound in the history of life. Fundamental to understanding its cause is determining the tempo and duration of the extinction. Uranium/lead zircon data from Late Permian and Early Triassic rocks from south China place the Permian-Triassic boundary at 251.4 +/- 0.3 million years ago. Biostratigraphic controls from strata intercalated with ash beds below the boundary indicate that the Changhsingian pulse of the end-Permian extinction, corresponding to the disappearance of about 85 percent of marine species, lasted less than 1 million years. At Meishan, a negative excursion in delta13C at the boundary had a duration of 165,000 years or less, suggesting a catastrophic addition of light carbon.

Journal Article↗

Edge effects and the extinction of populations inside protected areas

Theory predicts that small populations may be driven to extinction by random fluctuations in demography and loss of genetic diversity through drift. However, population size is a poor predictor of extinction in large carnivores inhabiting protected areas. Conflict with people on reserve borders is the major cause of mortality in such populations, so that border areas represent population sinks. The species most likely to disappear from small reserves are those that range widely-and are therefore most exposed to threats on reserve borders-irrespective of population size. Conservation efforts that combat only stochastic processes are therefore unlikely to avert extinction.

Journal Article↗