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Bounds for the scattering length of spin-polarized helium from high-accuracy electronic structure calculations.

We developed a series of correlation-consistent, polarized multiple zeta basis sets optimized specifically for the energy of the 2 3S state of helium atom. These basis sets were subsequently augmented with diffuse functions optimized for the van der Waals constants C6 through C14 which determine the asymptotic behavior of the second-order dispersion interaction between 2 3S helium atoms at large interatomic separation R. The resulting bases were applied to compute the Born-Oppenheimer (BO) potential for the lowest 5Sigmag+ state of the helium dimer. The coupled cluster and the full configuration-interaction techniques were employed to account for the electron correlation effects. The cardinal number extrapolation technique was used to obtain the complete-basis-set limit V(R) for the interaction potential and to find its lower VL(R) and upper VU(R) bounds. The resulting potentials were fitted to an analytical function containing accurate van der Waals constants C6 through C12 (including C11). We found that the complete-basis-set BO potential has a well depth De=1048.24+/-0.36 cm-1. The highest rotationless vibrational level is bound by D14=90.2+/-4.7 MHz, much stronger than the previous most accurate estimation of 15.2 MHz. The error bounds for De and D14 were obtained using the VL(R) and VU(R) potentials. The S-wave scattering length computed using the VL(R), V(R), and VU(R) potentials (assuming atomic masses) is aL=7.41 nm, a=7.54 nm, and aU=7.69 nm, respectively. We also computed the adiabatic, relativistic, and quantum electrodynamics (QED) corrections to the BO potential. When these corrections are taken into account the values of D14 and of a (both computed assuming nuclear masses) are 87.4+/-6.7 MHz and 7.64+/-0.20 nm; the error bounds reflect now also the uncertainty of the included adiabatic, relativistic, and QED corrections. The value of the scattering length resulting from our investigation lies outside the error bounds of all experimental determinations based on the properties of Bose-Einstein condensate of spin-polarized helium atoms.

Journal Article↗

The electronic structure of the hydrated proton: a comparative X-ray absorption study of aqueous HCl and NaCl solutions.

The oxygen K edge X-ray absorption spectra of aqueous HCl and NaCl solutions reveal distinct perturbations of the local water molecules by the respective solutes. While the addition of NaCl leads to large spectral changes, the effect of HCl on the observed X-ray absorption spectrum is surprisingly small. Density functional theory calculations suggest that this difference primarily reflects a strong blue shift of the hydrated proton (in either the Eigen (H9O4+) or Zundel (H2O5+) forms) spectrum relative to that of H2O, indicating the tighter binding of electrons in H3O+. This spectral shift counteracts the spectral changes that arise from direct electrostatic perturbation of water molecules in the first solvation shell of Cl-. Consequently, the observed spectral changes effected by HCl addition are minimal compared to those engendered by NaCl. Additionally, these results indicate that the effect of monovalent cations on the nature of the unoccupied orbitals of water molecules in the first solvation shell is negligible, in contrast to the large effects of monovalent anions.

Electrons↗

Investigation of the Unusual Electronic Structure of Pyrococcus furiosus 4Fe Ferredoxin by EPR Spectroscopy of Protein Reduced at Ambient and Cryogenic Temperatures.

The hyperthermophilic archaeon Pyrococcus furiosus contains a novel ferredoxin (Pf-Fd) in which, in the native 4Fe form, three of the Fe ions are coordinated to the protein by cysteinyl thiolato ligands, but the fourth Fe is coordinated by an aspartyl carboxylato ligand ([Fe(4)S(4)(cys)(3)(asp)](2)(-)(,3)(-)). Chemical reduction at ambient temperature of the oxidized 4Fe form (Pf-Fd 4Fe-ox, S = 0 ground state, with the cluster core indicated by [Fe(4)S(4)](2+)(ox)) produces a reduced 4Fe form (Pf-Fd 4Fe-red, with the cluster core indicated by [Fe(4)S(4)](+)(red)). Pf-Fd 4Fe-red, [Fe(4)S(4)](+)(red) core, in frozen solution exhibits S = (1)/(2) and (3)/(2) electronic states that are not in thermal equilibrium. The two spin states thus represent alternate ground states of the reduced cluster (cluster cores indicated by [Fe(4)S(4)](+)(red1) and [Fe(4)S(4)](+)(red2), respectively), rather than a ground and excited spin state. Low-temperature (77 K) reduction of 4Fe-ox in frozen solution by gamma-irradiation produces in high yield the reduced state of the cluster that is trapped in the structure of the oxidized parent cluster, and thus has a cluster core denoted by [Fe(4)S(4)](+)(ox). The [Fe(4)S(4)](+)(ox) form also exhibits non thermally converting S = (3)/(2) and (1)/(2) components in the same proportion as seen for [Fe(4)S(4)](+)(red). The EPR signal of the S = (3)/(2) component that results from cryoreduction ([Fe(4)S(4)](+)(ox2)) is indistinguishable, within experimental variability, from that seen in the ambient-temperature, chemically reduced protein ([Fe(4)S(4)](+)(red2)), and the signals of the two S = (1)/(2) components ([Fe(4)S(4)](+)(ox1) and [Fe(4)S(4)](+)(red1), respectively) closely resemble each other, although they are not identical. Previous NMR studies at ambient temperature showed evidence for only one species in fluid solution for both Pf-Fd 4Fe-ox and 4Fe-red. Taken together, the NMR and EPR results indicate that fluid solutions of either oxidized or reduced Pf-Fd contain only one conformer, but that frozen solutions of each contain two distinct conformers, with each one of the pair of oxidized protein forms having a corresponding reduced form. A shift in the coordination mode of the aspartyl carboxylato ligand is proposed to account for this conformational flexibility.

Journal Article↗

Spin-flip equation-of-motion coupled-cluster electronic structure method for a description of excited states, bond breaking, diradicals, and triradicals.

The spin-flip (SF) approach to multireference situations (e.g., bond breaking, diradicals, and triradicals) is described. Both closed- and open-shell low-spin states are described within a single reference formalism as spin-flipping, e.g., alpha --> beta, excitations from a high-spin reference state for which both dynamical and nondynamical correlation effects are much smaller than for the corresponding low-spin state. Formally, the SF approach can be viewed as an equation-of-motion model, where target states are sought on the basis of determinants conserving the total number of electrons but changing the number of alpha and beta electrons.

Journal Article↗

C28 fullerites-structure, electronic properties and intercalates.

Mechanical and electronic properties of hypothetical carbon nanostructures, on the basis of C28 building blocks, hyperdiamond and hyperlonsdaleite, have been investigated with DFT based methods. The low mass density and large internal surface suggest applications as catalyst, nanosieve and gas storage material. We estimate the active volume accessible by H2. Special emphasis is given to the possibility to tune their properties by endo- and exohedral intercalation with Zn, Ti and K. While endohedral intercalation with Zn does not affect the overall structure, endohedral Ti intercalation has different consequences on the structural stability of the two allotropes. Exohedral intercalation with K leads to an ionic fullerite phase with metallic conductivity.

Computer Simulation↗

Electronic structure of defect states in hydroxylated and reduced rutile TiO2(110) surfaces.

It has been experimentally observed that a bridging oxygen vacancy on the rutile TiO2(110) surface introduces localized Ti3+ 3d1 states about 1 eV below the conduction band which are not removed upon dissociation of a water molecule and formation of a pair of hydroxyl groups. Density functional calculations based on pure exchange-correlation functionals have not been able to satisfactorily reproduce and analyze these findings. Here we show that a correct description of the localized defect states on reduced and hydroxylated TiO2(110) is achieved only if proper geometry relaxation is accounted for using hybrid exchange functionals. We confirm the electron trapping nature of Ti(OH) groups but find no evidence that these defects should also act as hole traps by formation of Ti4+(OH)* radicals.

Journal Article↗

Ultraviolet photoelectron studies of biological purines: the valence electronic structure of adenine.

The UV photoelectron spectra of adenine, 9-methyladenine, and 6-methylaminopurine contain highly resolved bands arising from the six highest occupied molecular orbitals. The spectra have been analyzed using UV absorption data, photoelectron data from previous studies of heterocyclic compounds, and results from both semi-empirical and ab initio molecular orbital calculations. The analysis indicates that the first, third, and fifth photoelectron bands in adenine and the two methyl substituted derivatives arise from pi orbitals. The second, fourth, and sixth bands arise from nitrogen atom lone-pair orbitals. Compared to adenine, the six uppermost orbitals of 9-methyladenine and 6-methylaminopurine have lower ionization potentials. This destabilization of the valence electrons is expected to play an important role in causing the increase in base stacking forces observed in methyl substituted adenines.

2-Aminopurine↗

Electronic Structure and Substitution and Redox Reactivity of Imidazolate-Bridged Complexes of Pentacyanoferrate and Pentaammineruthenium.

The mixed-valence compound [(NC)(5)Fe(II)-Im-Ru(III)(NH(3))(5)](-),M(i), was prepared in solution and as a solid sodium salt from [Fe(CN)(5)H(2)O](3)(-) and [Ru(NH(3))(5)Im](2+). The binuclear complex shows two bands at 366 nm (epsilon = 3350 M(-)(1) cm(-)(1)) and 576 nm (epsilon = 1025 M(-)(1) cm(-)(1)), assigned as LMCT transitions, as well as a near-IR band at 979 nm (epsilon = 962 M(-)(1) cm(-)(1)) associated with an intervalence transition. By calculation of the Hush model parameters alpha(2) and H(ab) (delocalization and electronic coupling factors, respectively), the complex is defined as a valence-trapped Fe(II)-Ru(III) system; this is confirmed by the measured redox potentials at -0.20 V and 0.30 V, associated with redox processes at the ruthenium and iron center, respectively. The formation stability constant of the mixed-valence ion was obtained through independent measurements of k(f) and k(d), the formation and dissociation specific rate constants, respectively. The stabilization of M(i) with respect to disproportionation into the isovalent states, as well as toward the formation of the electronic isomer, Fe(III)-Im-Ru(II), was also estimated. The fully reduced (R(i)) and fully oxidized (O(i)) binuclear complexes were prepared in solution and characterized by UV-vis spectroscopy. The kinetics of the reactions of R(i) and M(i) with peroxydisulfate were measured and a mechanistic analysis was performed, showing the relevance of electronic isomerization in completing the full conversion to O(i), through the assistance of the Ru(II)(NH(3))(5)(2+) center in the oxidation of the neighboring Fe(II)(CN)(5)(3)(-) moiety. The latter results are compared with those obtained with related complexes comprising different X(5)M-L moieties bound to Ru(II)(NH(3))(5)(2+). A linear correlation is displayed by plotting ln k(et) against E degrees (Ru), associated with the intramolecular oxidation rate constant of Ru(II) in the ion pair (binuclear species + peroxydisulfate) and the reduction potential of the corresponding Ru(III,II) couple in the ion pair.

Journal Article↗

How many metal atoms are needed to dehydrogenate an ethylene molecule on metal clusters?: Correlation between reactivity and electronic structures of Fen+, Con+, and Nin+.

The absolute cross section for dehydrogenation of an ethylene molecule on Mn+ [Fen+ (n = 2-28), Con+ (n = 8-29), and Nin+ (n = 3-30)] was measured as a function of the cluster size n in a gas-beam geometry at a collision energy of 0.4 eV in the center-of-mass frame in an apparatus equipped with a tandem-type mass spectrometer. It is found that (1) the dehydrogenation cross section increases rapidly above a cluster size of approximately 18 on Fen+, approximately 13 and approximately 18 on Con+, and approximately 10 on Nin+ and (2) the rapid increase of the cross section for Mn+ occurs at a cluster size where the 3d electrons start to contribute to the highest occupied levels of Mn+. These findings lead us to conclude that the 3d electrons of Mn+ play a central role in the dehydrogenation on Mn+.

Journal Article↗

Molecular and electronic structures of tetrahedral complexes of nickel and cobalt containing N,N'-disubstituted, bulky o-diiminobenzosemiquinonate(1-) pi-radical ligands.

The reaction of 2 equiv of the bulky ligand N,N'-bis(3,5-di-tert-butylphenyl)-1,2-phenylenediamine, H2[3L(PDI)], excess triethylamine, and 1 equiv of M(CH3CO2)2.4H2O (M = Ni, Co) in the presence of air in CH3CN/CH2Cl2 solution yields violet-black crystals of [Ni(II)(3L(ISQ))2] CH3CN (1) or violet crystals of [Co(3L)2] (3). By using Pd(CH3CO2)2 as starting material, green-blue crystals of [Pd(II)(3L(ISQ))2].CH3CN (2) were obtained. Single-crystal X-ray crystallography revealed that 1 and 3 contain (pseudo)tetrahedral neutral molecules [M(3L)2] (M = Ni, Co) whereas in 2 nearly square planar, neutral molecules [Pd(II)(3L(ISQ))2] are present. Temperature-dependent susceptibility measurements established that 1 and 2 are diamagnetic (S = 0) whereas 3 is paramagnetic with an S = 3/2 ground state. It is shown that 1 contains two pi radical benzosemiquinonate(1-)-type monoanions, ((3L(ISQ))(1-*), S(rad) = 1/2), and a central Ni(II) ion (d8; S = 1) which are antiferromagnetically coupled yielding the observed S(t) = 0 ground state. This result has been confirmed by broken symmetry DFT calculations of 1. In contrast, the S(t) = 3/2 ground state of 3 is more difficult to understand: the two resonance structures [Co(III)(3L(ISQ))(3L(PDI))] <--> [Co(II)(3L(PDI))(3L(IBQ))] might be invoked (for tetrahedral [Co(II)(3L(ISQ))2] containing an S(Co) = 3/2 with two antiferromagnetically coupled pi-radical ligands an S(t) = 1/2 is anticipated). Complex 2 is diamagnetic (S = 0) containing a Pd(II) ion (d8, S(Pd) = 0 in an almost square planar ligand field) and two antiferromagnetically coupled ligand radicals (S(rad) = 1/2). The electrochemistry and spectroelectrochemistry of 1, 2, and 3 have been studied, and electron-transfer series comprising the species [M(L)2]z (z = 2+, 1+, 0, 1-, 2-) have been established. All oxidations and reductions are ligand centered.

Benzoquinones↗

Electronic structure and molecular properties of the heptacyanorhenate [Re(CN)7]3- and [Re(CN)7]4- complexes.

We report scalar relativistic and Dirac scattered wave (DSW) calculations on the heptacyanorhenate [Re(CN)7](3-) and Re(CN)7(4-) complexes. Both the ground and lowest excited states of each complex split by spin-orbit interaction by about 0.3 eV. The calculated molecular electronegativities chi indicate that the open-shell complex is less reactive than the closed-shell complex, in agreement with experimental observations. The calculations indicate that the ground state spin density is highly anisotropic and that spin-orbit effects are responsible for the magnetic anisotropy of the molecular g tensor of the Re(CN)7(3-) complex. The calculated optical electronic transitions for both complexes with a polarizable continuum model using a time-dependent density functional (TDDFT)/B3LYP formalism are in reasonable agreement with those observed in the absorption spectrum.

Journal Article↗

Direct observation of strain-induced change in surface electronic structure.

We have observed a novel modification of a surface state due to a local strain field induced by a nanopattern formation. N adsorption on the Cu(100) surface induces a nanoscale grid pattern, where the clean Cu regions remain periodically. The lattice is contracted on the clean region by adjacent c(2 x 2)N domains, which have a larger lattice constant. On this patterned surface, we have investigated the Tamm-type surface state at M by means of angle-resolved ultraviolet photoelectron spectroscopy. The binding energy of the Tamm state shifts toward the Fermi level continuously with increasing N coverage, i.e., the intensity of the strain field. This behavior due to the strain field is completely different from that caused by electron confinement observed on vicinal surfaces. The Brillouin zone extension corresponding to the lattice contraction was also detected.

Journal Article↗

Pseudomonas stutzeri soluble nitrate reductase alphabeta-subunit is a soluble enzyme with a similar electronic structure at the active site as the inner membrane-bound alphabetagamma holoenzyme.

A two-subunit (alphabeta) form of dissimilatory nitrate reductase from Pseudomonas stutzeri strain ZoBell was separated from the membrane-residing gamma-subunit by a heat solubilization step. Here we present an optimized purification protocol leading to a soluble alphabeta form with high specific activity (70 U/mg). The soluble form has the stoichiometry alpha(1)beta(1) consisting of the 130 kDa alpha-subunit and the 58 kDa beta-subunit. We did not observe any proteolytic cleavage in the course of the heat solubilization. The enzyme is competively inhibited by azide, but not by chlorate. It exhibits a K(M) value of 3.2 mM for nitrate. We compare the enzymatic and electron paramagnetic resonance (EPR) spectroscopic properties of the alphabeta form with the alphabetagamma holoenzyme which resides in the membrane and can be prepared by detergent extraction. The nearly identical EPR spectra for the Mo(V) signal of both enzyme preparations show that the active site is unaffected by the heat step. The factors influencing the binding of the alpha- and beta-subunit to the gamma-subunit are discussed.

Azides↗

Electronic structure, spectroscopic properties, and reactivity of molybdenum and tungsten nitrido and imido complexes with diphosphine coligands: influence of the trans ligand.

A series of molybdenum and tungsten nitrido, [M(N)(X)(diphos)2], and imido complexes, [M(NH)(X)(diphos)2)]Y, (M = Mo, W) with diphosphine coligands (diphos = dppe/depe), various trans ligands (X = N3-, Cl-, NCCH3) and different counterions (Y-= Cl-, BPh4-) is investigated. These compounds are studied by infrared and Raman spectroscopies; they are also studied with isotope-substitution and optical-absorption, as well as emission, spectroscopies. In the nitrido complexes with trans-azido and -chloro coligands, the metal-N stretch is found at about 980 cm(-1); upon protonation, it is lowered to about 920 cm(-1). The 1A1 --> 1E (n --> pi) electronic transition is observed for [Mo(N)(N3)(depe)2] at 398 nm and shows a progression in the metal-N stretch of 810 cm(-1). The corresponding 3E --> 1A (pi --> n) emission band is observed at 542 nm, exhibiting a progression in the metal-N stretch of 980 cm(-1). In the imido system [Mo(NH)(N3)(depe)2]BPh4, the n --> pi transition is shifted to lower energy (518 nm) and markedly decreases in intensity. In the trans-nitrile complex [Mo(N)(NCCH3)(dppe)2]BPh4, the metal-N(nitrido) stretching frequency increases to 1016 cm(-1). The n --> pi transition now is found at 450 nm, shifting to 525 nm upon protonation. Most importantly, the reduction of this nitrido trans-nitrile complex is drastically facilitated compared to its counterparts with anionic trans-ligands (Epred = -1.5 V vs Fc+/Fc). On the other hand, the basicity of the nitrido group is decreased (pKa{[Mo(NH)(NCCH3)(dppe)2](BPh4)2} = 5). The implications of these findings with respect to the Chatt cycle are discussed.

Journal Article↗

Molecular basis of the protonophoric and uncoupling activities of the potent uncoupler SF-6847 [3,5-di-tert-butyl-4-hydroxybenzylidene)malononitrile) and derivatives. Regulation of their electronic structures by restricted intramolecular rotation.

We reported recently (Yoshikawa, K. and Terada, H. (1982) J. Am. Chem. Soc. 104, 7644-7646) that the potent uncoupler of oxidative phosphorylation SF-6847 [3,5-di-tert-butyl-4-hydroxybenzylidene)malononitrile) shows unique intramolecular restricted rotation of the malononitrile moiety. In this study, values for the activation energy Ea of the restricted rotation of SF-6847 derivatives with the same alkyl chain R in both ortho positions of the phenolic hydroxyl group were determined from the temperature-dependent change in the 1H-NMR signals of their aromatic protons. The Ea values of the neutral forms of these derivatives were found to be the same irrespective of R, but those of the anionic forms increased with increase in the alkyl chain length of R. It was found that the restricted rotation of the malononitrile moiety regulates its electron-withdrawing ability in such a way as to keep the acid dissociability of these derivatives similar, overcoming the effect of steric hindrance by R. The protonophoric activity of these derivatives, in a phospholipid bilayer membrane and their uncoupling activity in rat-liver mitochondria were both found to depend on Ea of their anionic forms. The stability of the uncoupler anions regulated by the restricted rotation of the malononitrile group in a nonpolar membrane environment was found to be important for exhibition of these activities. The hydrophobicity of the anionic forms of these derivatives was suggested also to be affected by the intramolecular rotation.

Animals↗

Heats of formation of xenon fluorides and the fluxionality of XeF(6) from high level electronic structure calculations.

Atomization energies at 0 K and heats of formation at 0 and 298 K are predicted for XeF(+), XeF(-), XeF(2), XeF(4), XeF(5)(-), and XeF(6) from coupled cluster theory (CCSD(T)) calculations with new correlation-consistent basis sets for Xe. To achieve near chemical accuracy (+/-1 kcal/mol), up to four corrections were added to the complete basis set binding energies based on frozen core coupled cluster theory energies: a correction for core-valence effects, a correction for scalar relativistic effects, a correction for first-order atomic spin-orbit effects, and in some cases, a second-order spin-orbit correction. Vibrational zero-point energies were computed at the coupled cluster level of theory. The structure of XeF(6) is difficult to obtain with the C(3)(v)() and O(h)() structures having essentially the same energy. The O(h)() structure is only 0.19 kcal/mol below the C(3)(v)() one at the CCSD(T)/CBS level using an approximate geometry for the C(3)(v)() structure. With an optimized C(3)(v)() geometry, the C(3)(v)() structure would probably become slightly lower in energy than the O(h)() one. The calculated heats of formation for the neutral XeF(n)() fluorides are less negative than the experimental values from the equilibrium measurements by 2.0, 7.7, and 12.2 kcal/mol for n = 2, 4, and 6, respectively. For the experimental values, derived from the photoionization measurements, this discrepancy becomes even larger, suggesting a need for a redetermination of the experimental values. Evidence is presented for the fluxionality of XeF(6) caused by the presence of a sterically active, free valence electron pair on Xe.

Journal Article↗

[Electron structure of the heme of reduced cytochrome P450 and P420 from the data of low-temperature magnetic circular dichroism].

Magnetic circular dichroism spectra (MCD) of reduced cytochromes P450 and P420 from rabbit liver microsomes have been recorded and analyzed for the 350-600 nm spectral region in the temperature interval from 2 to 290 K. The shape, intensity and temperature dependence of the MCD of reduced P450 in the Soret region are quite different from that of other high-spin ferrous hemoproteins, whose heme iron is coordinated to the imidazole of histidine (deoxymyoglobin, deoxyhemoglobin, reduced peroxidase and cytochrome c oxidase). Assuming that in the reduced P450 as well as in its CO-complex the protein-derived ligand is mercaptide (RS-) the differences can be explained by the existence of two electronic transitions in the Soret region: the common for hemoproteins pi----pi porphyrin transition and sulfur to porphyrin charge-transfer transition, p+(Sp)----eg (pi). The unusual spectral characteristics of the CO-complex of P450 have been ascribed earlier to strong configurational interaction of these two transitions. From the similarities of the Soret MCD and their temperature dependences for the reduced P420 and for other high-spin ferrous hemoproteins one can conclude that heme iron of the reduced P420 is high-spin and is coordinated to the imidazole of histidine. The zero-field splitting parameter D of the spin Hamiltonian has been estimated from the MCD temperature dependences. The obtained splitting of approximately 30 cm-1 for P450 and of approximately 10 cm-1 for P420 exceeds that for myoglobin and hemoglobin (approximately 5 cm-1).

Animals↗