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At least 991 records · Page 55Linked to original sources
PubMed2001

Phase and amplitude analysis in time-frequency space--application to voluntary finger movement.

Two methods operating in time-frequency space were applied to analysis of EEG activity accompanying voluntary finger movements. The first one, based on matching pursuit approach provided high-resolution distributions of power in time-frequency space. The phenomena of event related desynchronization (ERD) and synchronization (ERS) were investigated without the need of band-pass filtering. Time evolution of mu- and beta-components was observed in a detailed way. The second method was based on a multichannel autoregressive model (MVAR) adapted for investigation of short-time changes in EEG signal. The direction and spectral content of the EEG activity propagation was estimated by means of short-time directed transfer function (SDTF). The evidence of 'cross-talk' between different areas of motor and sensory cortex was found. The earlier known phenomena, connected with voluntary movements, were confirmed and a new evidence concerning focal ERD/surround ERS and beta activity post-movement synchronization was found.

Algorithms↗
PubMed2001

Sources of error in maximum velocity estimation using linear phased-array Doppler systems with steady flow.

Using linear-array Doppler ultrasound (US) transducers, the measured maximum velocity may be in error and lead to incorrect clinical diagnosis. This study investigates the existence and cause of maximum velocity estimation errors for steady flow of a blood-mimicking fluid in a tissue-mimicking phantom. A specially designed system was used that enabled fine control of flow rate, transducer positioning and transducer angle relative to the flow phantom. Doppler machine settings (transducer aperture size, focal depth, beam-steering, gain) were varied to investigate a wide range of clinical applications. To estimate the maximum velocity, a new signal-to-noise ratio (SNR) independent method was developed to calculate the maximum frequency from an ensemble averaged Doppler power spectrum. This enabled the impact of each factor on the total Doppler error to be determined. When using the new maximum frequency estimator, it was found that the effect of transducer focal depth, intratransducer, intramachine, intermachine (that was tested) and beam-steering did not significantly contribute to maximum velocity estimation errors. Instead, it was the dependence of the maximum velocity on the Doppler angle that made, by far, the greatest contribution to the estimation error. Because our maximum frequency estimator took into account the effect of intrinsic spectral broadening, the degree of overestimation error was not as great as that previously published. Thus, the effects of Doppler angle and intrinsic spectral broadening are the chief sources of Doppler US error and should be the focus of future efforts to improve the accuracy.

Blood Flow Velocity↗
PubMed1999

Cortical activation, signal-to-noise ratio and stochastic resonance during information processing in man.

OBJECTIVES: The goal of this study was to determine the relation between EEG, event-related potentials and information processing as measured by an acoustical choice reaction time task. In particular, we wanted to find out to what extent reaction-time performance is related to the pre-stimulus EEG activity (frequency domain) and the magnitude of signal power as well as noise power (stimulus-uncorrelated activity) after the tones (time domain). MATERIALS AND METHODS: For parametrization, EEG-activity was factorized across pre-defined frequency bands and 19 electrode positions, applying spectral power and coherence analysis. Signal power was estimated by calculating the mean power of the evoked single sweeps. Noise power was computed by subtracting the latter minus the power of the average evoked potential. We investigated 254 healthy subjects who had to perform an acoustical choice reaction task during running EEG. RESULTS: In the frequency domain, it was found that high frontally pronounced delta-power in the pre-stimulus EEG correlates with fast reaction-time performance, which was regarded as the expression of a readiness potential in the frequency domain, reflecting increased cortical activation. In the time domain, fast reaction times were found to be correlated with the amplitude of the event-related potential N100 as well as with the signal power and signal-to-noise ratio of the evoked activity. This result pointed to the frequently described relation between evoked signals and information processing. In accordance with the theory of stochastic resonance, we also found a positive correlation between the magnitude of noise power after the stimulus and reaction-time performance. Besides, noise power was found to be positively correlated with pre-stimulus cortical activation (mainly in the delta and alphal frequency band), whereas no relation was found between pre-stimulus EEG and the signal power of the event-related activity, except for a weak relation to the alpha2 power. CONCLUSION: Our findings support the notion that information processing is not only dependent on signal strength but also on a certain amount of basic noise, reflecting the overall energy state of the brain.

Adolescent↗
PubMed1976

Studies on the 1967--68 foot and mouth disease epidemic: incubation period and herd serial interval.

The incubation period during this epidemic was studied using both a spectral analysis-cum-filtering method and analysis of case histories. Using spectral analysis, the modal herd serial interval was estimated to be 8--10 days based on the record of the daily number of outbreaks and an adjusted cattler series. The case histories tended to confirm these estimates but indicated that the serial interval varied considerably between species. The filtering method revealed that the herd serial interval apparently changed during the epidemic. For the first 4 weeks the interval was 8 days, while in the latter stages it was about 2 weeks.

Animals↗
PubMed2005

CopC protein from Pseudomonas syringae: intermolecular transfer of copper from both the copper(I) and copper(II) sites.

The CopC protein from Pseudomonas syringae pathovar tomato is expressed as one of four proteins encoded by the operon CopABCD that is responsible for copper resistance. It is a small soluble molecule (10.5 kDa) with a beta-barrel structure and features two distinct copper binding sites, which are highly specific for Cu(I) (K(D) > or = 10(-)(13)) and Cu(II) (K(D) approximately 10(-)(15)). These dissociation constants were estimated via ligand competition experiments monitored by electronic spectral and fluorescence probes. The chemistries of the two copper sites are interdependent. When the Cu(II) site is empty, the Cu(I) ion is oxidized by air, but when both sites are occupied, the molecule is stable in air. The availability of an unoccupied site of higher affinity induces intermolecular transfer of either Cu(I) or Cu(II) while maintaining free copper ion concentrations in solution at sub-picomolar levels. This intriguing copper chemistry is consistent with the proposed role of CopC as a copper carrier in the oxidizing periplasmic space. These properties would allow it to exchange either Cu(I) or Cu(II) with its putative partners CopA, CopB, and CopD, contrasting with the role of the Cu(I) (only) chaperones found in the reducing cytoplasm.

Bacterial Proteins↗
PubMed2005

Pulse radiolysis of supercritical water. 3. Spectrum and thermodynamics of the hydrated electron.

Spectra of the hydrated electron in pressurized light and heavy water at temperatures up to and beyond the critical temperature are reported, for wavelengths between 0.4 and 1.7 microm. In agreement with previous work, spectra can be approximately represented by a Gaussian function on the low-energy side, and a Lorentzian function on the high-energy side in subcritical water, but deviations from this form are very clear above 200 degrees C. The spectrum shifts strongly to the red as temperature rises. At supercritical temperatures, the spectrum shifts slightly to the red as density decreases, and the Gaussian-Lorentzian form is a very poor description. Application of spectral moment theory allows one to make an estimate of the average size of the electron wave function and of its kinetic energy. It appears that for water densities below about 0.6 g/cc, and down to below 0.1 g/cc, the average radius of gyration for the electron remains constant at around 3.4 angstroms, and its absorption maximum is near 0.9 eV. For higher densities, the electron is squeezed into a smaller cavity and the spectrum is shifted to the blue. The enthalpy and free energy of electron hydration are derived as a function of temperature on the basis of existing equilibrium data and absolute proton hydration energies derived from the cluster-based common point method. In a discussion, we compare the effective "size" of the hydrated electron derived from both methods.

Journal Article↗
PubMed2005

Preparation of ultrasmall, uncapped PbS quantum dots via electroporation of vesicles.

Electric-field-induced transient pore formation (electroporation) in synthetic unilamellar dioleoylphosphatidylcholine vesicles of 178-nm diameter is utilized for the preparation of subnanometer-size PbS quantum dots. With Pb2+ ions originally entrapped in the vesicles and S2- ions placed in the bulk, their reaction is initiated by the opening of pores and occurs in the bulk. The ensuing self-aggregation of PbS is slowed to the hour and day time scales by its adsorption at the exterior surface of the vesicles. The growth of the particles in the molecular size regime is found to exhibit novel, time-dependent, oscillating red and blue shifts of the characteristic UV absorption band. On the basis of similarities between the oscillating trend of the experimentally observed transition energy and that of the calculated highest occupied molecular orbital-lowest unoccupied molecular orbital gap of (PbS)n clusters with n = 1-9, the wavelengths of the sequential spectral peaks can be assigned to the PbS monomer (237.5 nm), dimer (282 nm), tetramer (232 nm), hexamer (281 nm), octamer (234.5 nm), and nonamer (278-280 nm). Growth beyond the octamer is associated with the customary monotonic red shift of the absorption band. Under the experimental conditions used, a stable system is reached with unchanging spectral features after 20 days. This solution is estimated to contain 1.82 x 10(-5) M (PbS)9 particles, each with a greatest dimension of <9 A.

Journal Article↗
PubMed2006

Parameters influencing the accuracy and practical applicability of UV indicator cards.

In order to evaluate the potential hazard for the skin and the eye presented by solar ultraviolet radiation, and to take appropriate precautions, it is necessary to characterise the biological effective irradiance or dose. Recently, inexpensive UV indicator cards became available that in principle would provide an attractive means to roughly indicate the local level of erythemal solar UV irradiance. We have characterised the properties of a number of different types of UV indicator cards. Several parameters which may influence the colour of the cards were examined with both outdoor trials under solar UV as well as indoor trials using a filtered xenon arc lamp. Our findings show that the tested cards do not give an appropriate estimation of the effective irradiance due to their spectral sensitivity and their temperature dependence. The application area of the tested UV indicator cards is therefore limited to certain temperature ranges and to seasons where a certain ratio between solar UV-A and solar UV-B occurs.

Humans↗
PubMed2006

DNA conformation on surfaces measured by fluorescence self-interference.

The conformation of DNA molecules tethered to the surface of a microarray may significantly affect the efficiency of hybridization. Although a number of methods have been applied to determine the structure of the DNA layer, they are not very sensitive to variations in the shape of DNA molecules. Here we describe the application of an interferometric technique called spectral self-interference fluorescence microscopy to the precise measurement of the average location of a fluorescent label in a DNA layer relative to the surface and thus determine specific information on the conformation of the surface-bound DNA molecules. Using spectral self-interference fluorescence microscopy, we have estimated the shape of coiled single-stranded DNA, the average tilt of double-stranded DNA of different lengths, and the amount of hybridization. The data provide important proofs of concept for the capabilities of novel optical surface analytical methods of the molecular disposition of DNA on surfaces. The determination of DNA conformations on surfaces and hybridization behavior provide information required to move DNA interfacial applications forward and thus impact emerging clinical and biotechnological fields.

DNA↗
PubMed1995

High resolution 2D-NMR studies indicating complete assignments and conformational characteristics of the NF-kappa B binding enhancer element of HIV-LTR.

The asymmetrical DNA duplex [5'd(AAGGGACTTTCC)].[5'-d(GGAAAGTCCCTT)] has been studied by one- and two-dimensional NMR techniques. The sequence is comprised of the actual 10 base-pair long binding site for the transcription factor NF-kappa B in the enhancer sequence of the long term repeat (LTR) region of HIV and SIV types of retroviruses associated with the AIDS syndrome. Two additional A.T base-pairs are also included on one end for an added interest in the 12-bp duplex sequence with a pseudo dyad-symmetric disposition of the oligopurine and oligopyrimidine segments, as it appears in the HIV-1 genome. Phase-sensitive two-dimensional spectra (NOESY, ROESY, COSY and TOCSY) were obtained at three different temperatures (5, 15 and 25 degrees C) for a complete assignment of the non-exchangeable protons by tracing through sequence specific intra- and internucleotide connectivities. 2D-NOESY spectra were also acquired in aqueous (90% H2O-D2O) solutions, with two different methods of water signal suppression, to assign the exchangeable protons from specific NOE correlations. Adenine H2 protons were assigned by the use of NOE correlations and from T1 relaxation time measurements. The general spectral features and semi-quantitative interproton distance estimates indicate a B-DNA type conformation. However, some distinctly unusual features associated with the nucleotides at and immediately adjacent to both the 5'-and 3'-ends of AAA/TTT and GGG/CCC segments were noted. The complete assignments, and the observed characteristics, will be of significant value in studying the complexes of this transcriptionally active DNA domain with the protein and other rationally designed DNA binding agents.

Base Sequence↗
PubMed2006

Entropy analysis of the EEG background activity in Alzheimer's disease patients.

Alzheimer's disease (AD) is the most common neurodegenerative disorder. Although a definite diagnosis is only possible by necropsy, a differential diagnosis with other types of dementia and with major depression should be attempted. The aim of this study was to analyse the electroencephalogram (EEG) background activity of AD patients to test the hypothesis that the regularity of the AD patients' EEG is higher than that of age-matched controls. We recorded the EEG from 19 scalp electrodes in 11 AD patients and 11 age-matched controls. Two different methods were used to estimate the regularity of the EEG background activity: spectral entropy (SpecEn) and sample entropy (SampEn). We did not find significant differences between AD patients and control subjects' EEGs with SpecEn. On the other hand, AD patients had significantly lower SampEn values than control subjects (p < 0.01) at electrodes P3, P4, O1 and O2. Our results show an increase of EEG regularity in AD patients. These findings suggest that nonlinear analysis of the EEG with SampEn could yield essential information and may contribute to increasing the insight into brain dysfunction in AD in ways which are not possible with more classical and conventional statistical methods.

Aged↗
PubMed1993

The effectiveness of beta-blockade and its influence on heart rate variability in vasovagal patients.

The aim of this study was to assess the effectiveness of chronic medical treatment with oral propranolol and its influence on heart rate variability in patients with vasovagal syndrome. A spectral frequency domain analysis was used for the estimation of heart rate variability characteristics. Thirty-six patients, mean age 49 +/- 17 years, with a history of recurrent syncope and positive tilt testing were involved in the study. All patients received oral propranolol (five patients also had a dual chamber inhibited DDI pacemaker implanted) for a mean time 12 +/- 6 months. One patient complained of syncope during this follow-up. The tilt test repeated in 29 patients during follow-up was negative in 28. In 20 patients treatment was discontinued for 4 days and a new tilt test was then performed. Eleven of these 20 patients (55%) had a positive test (P < 0.001 compared with the group in which treatment was continued). In the group of 11 patients in whom the tilt test became positive again after medical treatment had been withdrawn (mean age 43 +/- 20 years) and in 11 asymptomatic controls (mean age 52 +/- 19 years), with no history of syncope and negative tilt testing, the heart rate variability was assessed. The increase in the low frequency component from rest to the maximum value of heart rate variability during tilt testing was higher in the vasovagal group than in the controls (2.6 +/- 1.2 vs 1.5 +/- 0.7 P = 0.02).(ABSTRACT TRUNCATED AT 250 WORDS)

Administration, Oral↗
PubMed2001

Simultaneous measurement of hepatic tissue pH, venous oxygen saturation and hemoglobin by near infrared spectroscopy.

The purpose of this study was to investigate the feasibility of using near infrared (NIR) spectroscopy of the liver to simultaneously assess oxygen content in combination with tissue pH, an indicator of anaerobic metabolism. Six anesthetized swine were subjected to 45 min of hemorrhagic shock followed by resuscitation with blood and crystalloid. Calibration models between NIR spectra and reference measurements of tissue pH, hepatic venous oxygen saturation (S(V)O2), and blood hemoglobin concentration (Hb) were developed using partial least-squares regression. Model accuracy was assessed using cross validation. The average correlation (R2) between NIR and reference measurements was 0.87, 0.68, and 0.93, respectively for pH, Hb, and S(V)O2. Estimated accuracy, the root mean squared deviation between spectral, and reference measurements was 0.03 pH units, 0.3 g/dL, and 6%. NIR determination of hepatic oxygen content and tissue pH during shock and resuscitation demonstrated that there can be a variance between hepatic venous oxygenation and regional tissue acidosis. NIR spectroscopy provides a technique to explore the implications of post-shock depression of tissue pH and evaluate new methods of resuscitation.

Animals↗
PubMed2002

X-ray emission from betatron motion in a plasma wiggler.

The successful utilization of an ion channel in a plasma to wiggle a 28.5-GeV electron beam to obtain broadband x-ray radiation is reported. The ion channel is induced by the electron bunch as it propagates through an underdense 1.4-meter-long lithium plasma. The quadratic density dependence of the spontaneously emitted betatron x-ray radiation and the divergence angle of approximately (1-3)x10(-4) radian of the forward-emitted x-rays as a consequence of betatron motion in the ion channel are in good agreement with theory. The absolute photon yield and the peak spectral brightness at 14.2-keV photon energy are estimated.

Journal Article↗
PubMed2003

Two resonant magnetic modes in an overdoped high T(c) superconductor.

A detailed inelastic neutron scattering study of the overdoped high temperature copper oxide superconductor Y(0.9)Ca(0.1)Ba(2)Cu(3)O(7) reveals two-distinct magnetic resonant modes in the superconducting state. The modes differ in their symmetry with respect to exchange between adjacent copper oxide layers. Counterparts of the mode with odd symmetry, but not the one with even symmetry, had been observed before at lower doping levels. The observation of the even mode resolves a long-standing puzzle, and the spectral weight ratio of both modes yields an estimate of the onset of particle-hole spin-flip excitations.

Journal Article↗
PubMed1999

Modeling of surface myoelectric signals--Part I: Model implementation.

The relationships between the parameters of active motor units (MU's) and the features of surface electromyography (EMG) signals have been investigated using a mathematical model that represents the surface EMG as a summation of contributions from the single muscle fibers. Each MU has parallel fibers uniformly scattered within a cylindrical volume of specified radius embedded in an anisotropic medium. Two action potentials, each modeled as a current tripole, are generated at the neuromuscular junction, propagate in opposite directions and extinguish at the fiber-tendon endings. The neuromuscular junctions and fiber-tendon endings are uniformly scattered within regions of specified width. Muscle fiber conduction velocity and average fiber length to the right and left of the center of the innervation zone are also specified. The signal produced by MU's with different geometries and conduction velocities are superimposed. Monopolar, single differential and double differential signals are computed from electrodes placed in equally spaced locations on the surface of the muscle and are displayed as functions of any of the model's parameters. Spectral and amplitude variables and conduction velocity are estimated from the surface signals and displayed as functions of any of the model's parameters. The influence of fiber-end effects, electrode misalignment, tissue anisotropy, MU's location and geometry are discussed. Part II of this paper will focus on the simulation and interpretation of experimental signals.

Action Potentials↗
PubMed1992

On the mechanism of action of picrotoxin on GABA receptor channels in dissociated sympathetic neurones of the rat.

1. The mechanism of action of picrotoxin on GABA receptor channels in rat sympathetic neurones has been investigated with whole-cell clamp. In addition, the action of picrotoxin on single GABA channels has been examined in outside-out membrane patches from these cells. 2. Picrotoxin, at concentrations which dramatically reduced the amplitude of whole-cell GABA currents, did not alter the spectral time constants or single-channel conductance estimated by analysis of GABA-activated current noise. This was observed at potentials both negative and positive to the GABA reversal potential (i.e. for both inward and outward GABA currents). In control conditions, the slow and fast time constants from GABA noise were 40 +/- 14 ms and 2 +/- 0.4 ms, while the estimated single-channel conductance was 14 +/- 2 pS. In the presence of picrotoxin, the time constants and estimated single-channel conductance were 41 +/- 5 ms, 2.7 +/- 0.6 ms and 15 +/- 2.3 pS. 3. Picrotoxin did not alter the shape of the whole-cell GABA current-voltage relationship, indicating that the steady-state block was not voltage dependent. The lack of effect of picrotoxin on the GABA noise spectra and the lack of outward rectification makes it unlikely that picrotoxin acts by a simple voltage-dependent (or voltage-independent) channel blocking mechanism. In the presence of picrotoxin the reversal potential for GABA remained at approximately 0 mV in symmetrical chloride. 4. Distributions of total burst durations, obtained from single-channel records with low concentrations of GABA, were fitted with three or four exponential components. Picrotoxin had no consistent effect on the time constants of the total burst length distributions. It also did not alter the amplitude of the main conductance state. However, picrotoxin did reduce the frequency of channel openings. 5. The application of brief ionophoretic pulses of GABA, to cells under whole-cell voltage clamp, revealed that the rate of onset of block by picrotoxin was accelerated in the presence of GABA. In the absence of agonist, picrotoxin produced a more slowly equilibrating block. 6. Our data are consistent with a mechanism whereby picrotoxin binds preferentially to an agonist bound form of the receptor and stabilizes an agonist-bound shut state. This could, for example, mean that picrotoxin enhances the occurrence of a desensitized state or an allosterically blocked state.

Animals↗
PubMed1981

Thresholds for tones in maskers of various bandwidths and for signals of various bandwidths as a function of signal frequency.

Critical bandwidth (CB), which represents the narrowest filter the auditory system can achieve, may be estimated directly from either of two experiments. A breakpoint emerges from the threshold function of a pure tone presented with maskers of different bandwidth and from the threshold function of noise signals of different widths masked by wideband noise. The bandwidth at which the knee occurs in either function defines the CB. A "conjoint" CB estimate can also be obtained by extrapolating noise-signal thresholds to be threshold level of a tone in wideband noise. Compared to other estimation procedures, the conjoint estimate is less affected by the signal's spectral splatter, the masker's intensity variability in time, and assumptions about the listening band's placement.

Acoustic Stimulation↗