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Electrophoresis in the presence of Coomassie brilliant blue R-250 stains polyacrylamide gels during protein fractionation.

A method of staining polyacrylamide gels in which the dye is electrophoresed together with the sample is proposed. The method cuts short and simplifies the conventional electrophoresis procedure by eliminating the separate poststaining step. In the gels run in the presence of sodium dodecyl sulfate, the method produces protein staining patterns which are quantitatively identical to the ones obtained by conventional staining procedure. Additional advantages of the method are easy control over the degree of staining and homogenous staining independent of the gel thickness and concentration of the dye.

Electrophoresis, Polyacrylamide Gel↗

A method for the detection and differentiation of cellulase components in polyacrylamide gels.

Endoglucanase and exoglucanase components of cellulase can be detected and differentiated after polyacrylamide gel electrophoresis by performing activity stains. Endoglucanase activity was visualized in carboxymethyl cellulose agar replicas of gels by staining with Congo red. General beta-1,4-glucanase activity was located by soaking the gel in a solution of NaBH4-reduced cellulooligosaccharides, and detecting the formation of reducing sugars by reaction with triphenyl tetrazolium chloride. Endoglucanases are active in both assays, while exoglucanases can be distinguished by their activity in the cellulo-oligosaccharide assay only. This methodology has facilitated the purification and characterization of cellulase components from Trichoderma reesei and Microbispora bispora.

Cellulase↗

Blotting intact immunoglobulins and other high-molecular-weight proteins after composite agarose-polyacrylamide gel electrophoresis.

A composite agarose-polyacrylamide gel containing urea and sodium dodecyl sulfate reliably resolved unreduced human immunoglobulins according to their molecular weight. Intact immunoglobulins and a number of other macromolecules were readily transferred to nitrocellulose paper by either capillary or electrophoretic blotting, although the latter technique was more effective. Conventional antigen probing as well as immobilized antibody studies can be performed on the nitrocellulose transfers.

Autoradiography↗

An apparatus for reproducible large scale preparation of polyacrylamide gradient tube gels.

A device for the preparation of polyacrylamide tube gels for pore gradient gel electrophoresis is described. The glass tubes are arranged in the shape of a hollow cylinder, of which the outer as well as the inner surface can be cooled. By this arrangement, the maximum distance the heat of reaction has to be conducted is 7.5 mm. According to the outer diameter of the tubes, the number of gels held by one device ranges from 125 (5 mm) to 500 (2.5 mm). The gels are demonstrated to be identical, and allow for highly reproducible separations.

Acrylic Resins↗

Detection of protein in polyacrylamide gels using an improved silver stain.

A much improved silver staining procedure for the detection of protein in polyacrylamide gels of 0.8-3.0 mm thickness is described. It achieves very high sensitivity (detecting less than 0.01 ng bovine serum albumin/mm2) by overstaining and subsequently removing nonspecific background stain using a modified, reliable destaining procedure. Maximum sensitivity follows prediamine equilibration in 0.1% (w/v) formaldehyde solution. With two-dimensional electrophoresis the improved staining procedure reveals greater than 200 polypeptides in unconcentrated human urine and greater than 150 polypeptides in a single human fingerprint.

Electrophoresis, Polyacrylamide Gel↗

Specific indication of hemoproteins in polyacrylamide gels using a double-staining process.

Hemoproteins were revealed in polyacrylamide gels in the presence of sodium dodecyl sulfate by staining with different benzidine derivatives. When the protein samples were treated with either beta-mercaptoethanol or dithiothreitol, a significant decrease in peroxidase activity of the proteins possessing noncovalently bound heme led to diminished staining. However, when Coomassie blue R-250 staining followed the hemespecific stain it was observed that the hemoprotein bands stained more intensely than duplicate sample bands that had been stained only with the Coomassie blue R-250. This staining property allows the indication of hemoproteins in gels even after the peroxidase yield has been significantly depleted by reducing agents.

Benzidines↗

Quantitation of apolipoprotein A-I in pooled human serum by single radial immunodiffusion and sodium dodecyl sulfate-polyacrylamide gel electrophoresis.

Apolipoprotein A-I was released from human HDL particles by treatment with 8 M urea, and the free apolipoprotein exhibited identical antigenicity and the same low mobility as purified apolipoprotein A-I in electrophoresis. Treatment of serum with 8 M urea enabled enabled quantitation of apolipoprotein A-I by single radial immunodiffusion assay, as judged by comparison with sodium dodecyl sulfate-polyacrylamide gel electrophoresis.

Apolipoprotein A-I↗

Detection of lipopolysaccharides in polyacrylamide gels by transfer to nitrocellulose followed by immunoautoradiography with antibody and 125I-protein A: "LPS blotting".

Lipopolysaccharides (LPS), which constitute the somatic (O) antigen of gram-negative bacteria, were used to demonstrate the procedure of LPS blotting involving the electrophoretic transfer of electrophoretically resolved LPS from sodium dodecyl sulfate-polyacrylamide gels to nitrocellulose filters. Immobilized LPS could then be immunoautoradiographically visualized in situ by reaction with specific anti-LPS antibody and subsequent binding of radioiodinated Staphylococcus protein A. LPS blotting is expected to provide an efficient and specific means of investigating the LPS (O) antigens of gram-negative bacteria.

Antibodies, Bacterial↗

An economic "power supply" using a diode for agarose and polyacrylamide gel electrophoresis.

Gel electrophoresis using agarose and polyacrylamide is a technique widely used for the separation of DNA and protein of various molecular sizes. This type of electrophoresis involves use of a rather expensive dc power supply composed of a complicated circuit. A simple circuit consisting of a single diode was designed, which can be used as a substitute for the conventional power supply. There are no appreciable differences in the so-obtained electrophoretic patterns. This simple, economic system is expected to be applied for use in laboratory, industrial, educational, and clinical facilities.

DNA↗

Extraction of proteins for sodium dodecyl sulfate-polyacrylamide gel electrophoresis from protease-rich plant tissues.

A method of extracting proteins for sodium dodecyl sulfate-polyacrylamide gel electrophoresis from plant tissues with high protease activity was described. It resolved protein bands in high-molecular-weight regions of the gel and replaced commonly used procedures which showed severe degradation of proteins, even in the presence of protease inhibitors.

Electrophoresis, Polyacrylamide Gel↗

Quantitation of protein by alkaline extraction of naphthol blue black-stained polypeptides in sodium dodecyl sulfate-polyacrylamide slab-gels.

A sodium dodecyl sulfate-polyacrylamide slab-gel system was used to study the alkaline extraction of Naphthol Blue Black B-stained polypeptides. A simple, rapid, and reproducible method for quantitative assessment of 1- to 5-micrograms quantities of individual polypeptides in the molecular weight range of 14,000 to 120,000 is described. The working range of the assay may be extended to the 20-micrograms level at the expense of rapidity.

Amido Black↗

Visible labeling of proteins for polyacrylamide gel electrophoresis with dabsyl chloride.

Several proteins, which are used as molecular weight markers in polyacrylamide gel electrophoresis, were reacted with dabsyl chloride. This labeled them deep orange and the chromophore attachment was stable throughout the electrophoretic procedure and fixation. Small amounts (10-50 micrograms) of the labeled proteins could be loaded onto gels and seen with the unaided eye so that the separation during electrophoresis could be followed. Dabsylation did not affect the mobility of the proteins. The location of the orange band gave a good indication of the position of the protein in the gel so that molecular weight estimations could be made during and immediately following electrophoresis.

Chromogenic Compounds↗

Analytical isoelectric focusing using a high-voltage vertical slab polyacrylamide gel system.

A commercially supplied vertical slab electrophoresis system has been modified to permit electrofocusing of thin gels using electrical potentials of 3000 V and higher. Polyacrylamide gels (5.65% T, 2.65% C; 2.4-3.3% (w/v) ampholytes; 0.35 mm thick X 98-105 mm long X 140 mm wide) were run under native and denaturing conditions. Accurate temperature regulation and atmospheric control were obtained by casting the gel between two glass plates, and then completely submerging the gel in the lower tank buffer. As many as 18 samples were loaded into wells at the top of each gel. Protein standards and mouse ascites fluid were focused on gels in the native state using a broad-range blend of commercial ampholytes from pH 3.5 to 10. Narrow-range pH ampholyte blends were also used: pH 2.5 to 6 under denaturing conditions resolving bovine calmodulins; pH 4 to 6 under a native condition for human plasma proteins including immunoglobulin G, fibronectin, and fibrinogen; pH 4 to 6 under denaturing conditions for myosin light chains; pH 6 to 9 under native conditions for human hemoglobins; and pH 9 to 11 under denaturing conditions to separate 30 S ribosomal subunit proteins. High-voltage vertical slab electrofocusing provides a means for rapid resolution of multiple protein samples using stable pH gradients. The method is especially valuable in ranges near pH 2.5 and pH 10.5 in which difficulties have previously been encountered with regard to atmospheric control and temperature regulation using conventional focusing techniques.

Animals↗

Size-exclusion high-performance liquid chromatography and sodium dodecyl sulfate-polyacrylamide gel electrophoresis of proteins: a comparison.

When size-exclusion HPLC (SE-HPLC) is applied for the separation of hydrophilic and hydrophobic proteins, numerous problems can be encountered, which may present considerable difficulties. A major source of such complications is interaction between column packing and sample, especially on the so-called "Diol" and "Polyol" columns. In many cases interaction can be reduced only by adding detergents. Calibration proteins and hydrophobic membrane proteins of liver are separated by SE-HPLC. The influence of detergents on association and dissociation of protein subunits and protein configuration is shown. These factors can affect the elution volume during chromatography. Furthermore it is shown that a direct comparison can be drawn between the protein separation by SE-HPLC on the one hand and by sodium dodecyl sulfate-polyacrylamide gel electrophoresis on the other hand. As an example the separation of the delta-subunit of the acetylcholine receptor was shown under reducing and nonreducing conditions.

Animals↗

Detection of glutathione transferase activity on polyacrylamide gels.

A simple and sensitive assay for glutathione transferase activity on polyacrylamide gel is described. The method is based on the fast reduction of nitroblue tetrazolium salt by glutathione. Blue insoluble formazan colors the gel except in the glutathione transferase area. The stable and defined colorless zone is still detectable with 0.005 unit enzyme. This technique has been successfully applied with enzyme preparations of human heart and other tissues.

Animals↗