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Heuristic optimization algorithms applied to the quantification of spectroscopic data.

The quantification of in vivo MR spectra imposes severe problems because of low spectral resolution and poor signal-to-noise ratio. Maximum likelihood methods are often applied. However, with conventional spectrum analysis procedures, the search for a global minimum in a multidimensional space often terminates in only a local minimum. Heuristic optimization procedures are able to circumvent this difficulty. Two approaches, the genetic algorithm and the simulated annealing, have been adapted to the quantification of MR spectra. For evaluation purposes, the procedures have been applied to synthetic and in vivo spectra with different noise levels. They both allowed a reliable spectrum quantification. The areas of most peaks were quantified reproducibly, although in some cases, the discrimination between spectroscopically almost identical metabolites (e.g., glutamate and glutamine) was not completely satisfactory. The two algorithms are found to be valuable alternative methods in the quantification of in vivo MR spectra.

Algorithms↗

Application of modified supercritical carbon dioxide extraction to microbial quinone analysis.

Supercritical carbon dioxide (scCO2) was applied to extract microbial quinones from activated sludge. Identification and analysis was then performed using high-performance liquid chromatography (HPLC) equipped with ultraviolet-visible (UV-Vis) detector and photodiode array detector (PDA). Extracted microbial quinones were trapped and separated as menaquinones (MK) and ubiquinones (Q) species using two Sep-Pak Plus Silica cartridges joined in series. Four ubiquinones and 12 menaquinones species were identified in 0.1 g dried activated sludge based on retention time and spectrum analysis. Among the tested various polar solvents, methanol showed to be the best modifier, based on the highest total quinone content extracted and the lowest dissimilarity index. The diversity index of quinone and the number of quinone species using methanol-modified scCO2 were similar to that of the conventional method (organic solvent extraction).

Carbon Dioxide↗

Reliable and rapid identification of Listeria monocytogenes and Listeria species by artificial neural network-based Fourier transform infrared spectroscopy.

Differentiation of the species within the genus Listeria is important for the food industry but only a few reliable methods are available so far. While a number of studies have used Fourier transform infrared (FTIR) spectroscopy to identify bacteria, the extraction of complex pattern information from the infrared spectra remains difficult. Here, we apply artificial neural network technology (ANN), which is an advanced multivariate data-processing method of pattern analysis, to identify Listeria infrared spectra at the species level. A hierarchical classification system based on ANN analysis for Listeria FTIR spectra was created, based on a comprehensive reference spectral database including 243 well-defined reference strains of Listeria monocytogenes, L. innocua, L. ivanovii, L. seeligeri, and L. welshimeri. In parallel, a univariate FTIR identification model was developed. To evaluate the potentials of these models, a set of 277 isolates of diverse geographical origins, but not included in the reference database, were assembled and used as an independent external validation for species discrimination. Univariate FTIR analysis allowed the correct identification of 85.2% of all strains and of 93% of the L. monocytogenes strains. ANN-based analysis enhanced differentiation success to 96% for all Listeria species, including a success rate of 99.2% for correct L. monocytogenes identification. The identity of the 277-strain test set was also determined with the standard phenotypical API Listeria system. This kit was able to identify 88% of the test isolates and 93% of L. monocytogenes strains. These results demonstrate the high reliability and strong potential of ANN-based FTIR spectrum analysis for identification of the five Listeria species under investigation. Starting from a pure culture, this technique allows the cost-efficient and rapid identification of Listeria species within 25 h and is suitable for use in a routine food microbiological laboratory.

Bacteriological Techniques↗

Assistance of intraoperative microvascular Doppler in the surgical obliteration of spinal dural arteriovenous fistula: cases description and technical considerations.

BACKGROUND: Intraoperative microvascular Doppler may be valuable in assisting in the surgical obliteration of dural arteriovenous fistula of the spinal cord. It enables identification, through flow spectrum analysis, of the anatomic components and haemodynamic features of this type of vascular malformation. METHODS: In two cases, intraoperative microvascular Doppler was used to assist in the surgical obliteration of dural arteriovenous fistula of the spinal cord. The fistulas were identified prior to the dura opening, and for this only minimally invasive surgery was required. Direct recordings of the arterialised draining vein and the nidus of the fistula demonstrated a pathological spectrum caused by the arterial supply and the disturbed venous outflow in which a high-resistance flow pattern and low diastolic flow resembling an arterial-like flow velocity were observed. FINDINGS: The fistulas were obliterated by interruption of the draining vein, and Doppler measurements provided information on flow velocity changes in the medullary veins from an arterial to a venous pattern. The absence of any residual flow in the draining vein confirmed successful haemodynamic treatment. INTERPRETATION: Intraoperative microvascular Doppler recording is valuable assistance in surgical closure of spinal arteriovenous fistula.

Aged↗

[Study of numerical mapping methods for DNA sequences].

The first problem to be solved is to map DNA sequences onto numerical sequences in bio molecular sequence analysis by mathematical, physical and digital signal processing methods. The characters and the adaptability of eight existing mapping methods are analyzed in this paper. A new numerical mapping method based on the probability of bases in the segment DNA sequence is presented. Most of the coding sequences are characterized by 3 - base periodicity. Further more, eight numerical mapping methods are compared and the new method is verified by means of the spectrum analysis of DNA sequence with 3 - base periodicity. The computer simulation results show that the mapping method based complex plane is superior to the other seven methods in reflecting the original information of the bio-molecular sequence and the quality of the obtained power spectra. The identification rate the new method attains is approximately what the complex plane method has achieved.

Algorithms↗

[Biochemical and psychophysiological study of haloperidol-induced akathisia].

Plasma haloperidol (HPD) concentration, prolactin (PRL) and cortisol levels were monitered in eighteen normal adult men before and after intravenous administration of 2.5 mg haloperidol for 150 min. in order to elucidate emotional state and autonomic nervous function during state of akathisia psychophysiologically, power spectrum of photoelectric finger plethysmogram via Fourier transform, skin potential reflex (SPR) and heart rate (HR) before and after the injection were simultaneously examined in all subjects. Power distribution of spectrum of plethysmogram showed normal pattern (main peak power was observed on about 1 Hz and 2nd peak was less than 0.3 Hz.) in all subjects before injection. The spectrum of about 1 Hz was significantly decreased after the injection and that of less than 0.3 Hz tended to be increased in the akathisia group. There was no significant difference of Plasma PRL and HPD concentration in both akathisia and non-akathisia groups. However, significant correlation between these two parameters was found in both groups. The mean plasma cortisol level of the akathisia group was tended to be lower than that of the non-akathisia group. The former group was divided into the following two subgroups by power spectrum analysis; the high frequency dominant group (HF) and the low frequency dominant group (LF). The main peak of the former group was about 1 Hz, and that of the latter group was 0.3 Hz. The mean plasma cortisol level of LF was significantly lower than that of the non-akathisia group on 90 min after the injection of HPD. These results suggest that akathisia could be measured objectively by power spectrum of plethysmogram, and that some neurotransmitters other than dopamine also might be related with akathisia.

Action Potentials↗

Triggering of soman-induced seizures in rats: multiparametric analysis with special correlation between enzymatic, neurochemical and electrophysiological data.

Soman, an anticholinesterasic neurotoxic drug, induces epileptic seizures during severe intoxication. The neuropathological lesions then observed are linked to the appearance of these seizures, but their trigger conditions still remain unknown and a great variability between animals is observed. We have developed a technique allowing, in freely moving rats, the in vivo determination of three sets of neurophysiological data, before and during a soman intoxication. For the same rat, we associated cortical acetylcholinesterase (AChE) activity by microdialysis with both the assay of extracellular acetylcholine (ACh) concentrations and electroencephalographic (EEG) recording and power spectrum analysis (gamma band). Data have been analyzed to define the critical parameters which lead to the epileptic fit. Although we found thresholds for seizure occurrence, AChE inhibition having to be over 65% and ACh over 200-fold the baseline, these two criteria are not sufficient to predict the appearance of seizures. Only animals with no increase of energy in the gamma band early after soman poisoning will then exhibit an epileptic fit. Gamma band energy is modulated by noradrenergic activity and might be related to the sympathetic response to stress. So we can hypothesize, that the variation of energy in gamma band after intoxication, which might be related to stress adaptation strategy, may determine whether or not the animal will exhibit an epileptic fit.

Acetylcholine↗

An association between reduced interhemispheric EEG coherence in the temporal lobe and genetic risk for schizophrenia.

Previous studies have suggested that schizophrenic patients show resting changes such as frequency-slowing and decreased coherence in the frontal and temporal area. We sought to determine whether these findings are also found in clinically unaffected siblings of schizophrenics and estimate heritability by calculating relative risk. We investigated two independent data sets: (1) from the NIMH St. Elisabeth's campus (59 schizophrenics, 76 unaffected siblings and 32 unrelated normal controls) and (2) from the NIH-campus (Bethesda) (59 schizophrenics, 90 unaffected siblings and 26 unrelated normal controls). We computed power spectra and coherence on the first data set and then tried to replicate the results on the second data set. Power spectrum analysis suggested that schizophrenics are cortically hypoactivated, whereas in unaffected siblings, a tendency for hyperactivation was found. In contrast, spectral coherences (0.5-5Hz) were reduced in both data sets in the temporal lobe areas in schizophrenics and in their unaffected siblings. Changes were most pronounced for the interhemispheric coherence linking both posterior temporal lobe areas. Relative risk calculations (lambda(S)) ranged between 3.7 and 9.8, depending on phenotype definition. Thus, while power spectrum EEG abnormalities may be state-dependent, reduced coherence as a possible measure of neuronal synchronization is familial and potentially a heritable trait related to genetic risk for schizophrenia.

Adolescent↗

[Antiischemic and metabolic effects of nebivolol and metaprolol CR/XL (betalok ZOK) in patients with postinfarction heart dysfunction].

The purpose of the study was to evaluate anti-ischemic and metabolic effects of the cardioselective beta-adrenoblockers nebivolol and retarded metoprolol-metaprolol CR/XL (betalok ZOK) in patients with postinfarction heart dysfunction, associated with type II diabetes mellitus (DM). 40 patients with coronary heart disease (CHD), functional class (FC) II-III exertional angina, postinfarction left ventricular (LV) dysfunction, and NYHA FC II heart failure, associated with type II DM, were randomized into 2 groups. The 20 patients of the 1st group were administered nebivolol in a dose of 1.25 to 5 mg per day, the 20 patients of the 2nd group - betalok ZOK in a dose of 12.5 to 100 mg per day. The course therapy lasted 8 weeks. The effects of the treatment were evaluated using paired veloergometry, echoCG, and lipid spectrum analysis. The study found that nebivolol in a mean dose of 4.2 +/- 0.3 mg per day and betalok ZOK in a dose of 46.5 +/- 6.2 mg per day reduced the frequency and severety of angina attacks (by 73.8% and 67.8%, respectively) and daily nitroglycerine uptake (by 78.6% and 69.1%, respectively), and increased activity tolerance (by 7.9% and 25.3%, respectively). None of the preparations displayed any adverse effects on carbohydrate exchange and blood lipid spectrum. Nebivolol, unlike betalok ZOK, significantly (p = 0.02) reduced triglyceride blood level by 29%. Thus, the new generation cardioselective beta1-adrenoblockers nebivolol and metoprolol CR/XL (betalok ZOK) provide anti-ischemic and metabolic effects in patients with CHD and postinfarction LV dysfunction, associated with type 2 diabetes mellitus. Nebivolol is preferable as far as blood lipid spectrum is concerned.

Adrenergic beta-Antagonists↗

[Cardiac imaging by nuclear magnetic resonance. II. Spectroscopy].

Nuclear magnetic resonance (NMR) spectroscopy is a new technique to study myocardial metabolism in living tissues by noninvasive means. The biochemical studies on intact hearts are performed in multinuclear NMR spectrometers using Fourier transform techniques for data acquisition. The biological NMR experiments preserve the tissues and can be repeated with a temporal resolution of seconds to several minutes in a reproducible fashion. As a marker of the intermediary metabolism P-31, C-13, H-1, F-19, N-14, Na-23, and K-39 isotopes are commonly used. NMR spectrum analysis permits the identification of several important substrates of the myocardial metabolism and their concentrational changes. In addition, the biophysical parameters of magnetic relaxation properties are measured. In some instances enzyme kinetics can be assessed. The disadvantage of NMR spectroscopy is the low sensitivity: only substrates with a intracellular concentration of greater than or equal to 0.5 mM can be detected. Improvements in sensitivity can be achieved, if the number of scans per spectrum and magnetic field strength are increased. The application of NMR spectroscopy in cardiovascular medicine is new and systematic studies on myocardial metabolism in vivo are not yet available. However, using P-31 MR spectroscopy several important results concerning the changes of the high energy phosphates and the intracellular pH changes during myocardial ischemia, as well as interesting insights into the regulatory principles of the cellular respiration were obtained. Similarly, C-13 NMR spectroscopy successfully described some aspects of glycogen metabolism and the kinetics of citric acid cycle in the myocardium. The clinical application of NMR spectroscopy appears feasible in a near future. The practical importance of this promising technique in clinical cardiology will depend on availability of the whole-body MR spectrometers, on the development of pertinent techniques for spatial MR signal resolution, and on our ability to uncover and to understand the biochemical principles of cardiac diseases. However, it is already today evident that MR spectroscopy successfully shifted the research interests towards biochemical processes at the cellular level as important causes and markers of cardiac diseases and extended our knowledge of the pathophysiology of the myocardium.

Animals↗

Degradation characteristics and metabolic pathway of 17alpha-ethynylestradiol by Sphingobacterium sp. JCR5.

A 17alpha-ethynylestradiol (EE2)-degrading bacterium was isolated from the activated sludge of the wastewater treatment plant (WWTP) of an oral contraceptives producing factory in Beijing, China. On the basis of its morphology, biochemical properties and the 16S rDNA sequence analysis, this strain was identified as Sphingobacterium sp. JCR5. This strain grew on EE2 as sole source of carbon and energy, and metabolized up to 87% of the substrate added (30 mgl-1) within 10 d at 30 degrees C. In addition to EE2 the strain could be cultivated on steroidal estrogens like estrone (E1), 17beta-estradiol (E2), estriol (E3) and mestranol (MeEE2), the intermediates of contraceptive medicine processing and on some aromatic compounds. Mass spectrum analysis of the EE2 degradation showed that in the first step it is oxygenized to E1, 2-hydroxy-2,4-dienevaleric acid and 2-hydroxy-2,4-diene-1,6-dioic acid, which are the main catabolic intermediates. The former was analogous to the pathway of a previously reported testosterone-degrading bacterium Comamonas testosteroni TA441 and the latter is a metabolite with a different cleavage position of 3-hydroxy-4,5-9,10-disecoestrane-1(10),2-diene-5,9,17-trione-4-oic acid from the former.

Ethinyl Estradiol↗

Influence of caffeine ingestion on autonomic nervous activity during endurance exercise in humans.

The effects of caffeine ingestion on the activities of the autonomic nervous system (ANS) during endurance exercise at low intensity were investigated using a power spectrum analysis of heart rate variability. Placebo or caffeine (300 mg) capsules were randomly administered to the subjects. Each subject ingested the samples 2 h before cycling on an ergometer for 30 min at an intensity corresponding to 40%-50% of his ventilatory threshold. The electrocardiogram, blood pressure (BP) and gas exchange parameters were monitored during rest and exercise. The results indicated that there were no significant differences in heart rate and systolic blood pressure between the trials. The spectrum integrated values of the low frequency power and total power components in the caffeine trial were significantly greater than in the placebo trial during exercise, which implied that activities of the ANS were augmented by caffeine. Caffeine also induced enhanced lipid oxidation as shown by the significantly lower respiratory gas exchange ratio and increases in diastolic blood pressure during exercise. The results shed some light upon the relationship between the activity of the ANS, energy metabolism and BP. In conclusion, the results suggest that caffeinated beverages have a potential to be useful supplements to the prescription of exercise for individuals who experience a depressed activity of the ANS. The results also suggest that the experiment protocol used in this study is a sensitive and noninvasive method for evaluating the effects of various foods and nutrients on the activity of the ANS.

Adult↗

Fourier series analysis of the electrophysiological pattern of fatigue in healthy human beings, after curare administration.

Real time computer analysis of the electrophysiological development of muscular fatigue after small doses of d-tubocurarine (TC), has been examined in anesthetized human beings. As compared to a decrease of frequency in the control measurements, previous studies have shown an increase of the frequency of spikes after TC administration. The present experiments were carried out on the biceps brachii of 8 healthy human volunteers maintained in isometric contraction against a constant counter load until complete fatigue occurred. The Fourier spectrum analysis showed a statistically significant shift to lower frequencies before, and a milder statistically non significant shift after TC. These results may indicate that under mild curarization the early phase of muscular contraction requires a higher number of large motor units and thus, at a later stage of the contraction the pool of available large motor units becomes smaller. This conclusion supports the hypothesis that mild curarization causes a state of initial muscular fatigue.

Action Potentials↗

Cluster analysis of BOLD fMRI time series in tumors to study the heterogeneity of hemodynamic response to treatment.

BOLD-contrast functional MRI (fMRI) has been used to assess the evolution of tumor oxygenation and blood flow after treatment. The aim of this study was to evaluate K-means-based cluster analysis as a exploratory, data-driven method. The advantage of this approach is that it can be used to extract information without the need for prior knowledge concerning the hemodynamic response function. Two data sets were acquired to illustrate different types of BOLD fMRI response inside tumors: the first set following a respiratory challenge with carbogen, and the second after pharmacological modulation of tumor blood flow using flunarizine. To improve the efficiency of the clustering, a power density spectrum analysis was first used to isolate voxels for which signal changes did not originate from noise or linear drift. The technique presented here can be used to assess hemodynamic response to treatment, and especially to display areas of the tumor with heterogeneous responses.

Animals↗

Evidences of precession and obliquity orbital forcing in oxygen-18 isotope composition of Montalbano Jonico section (Basilicata, southern Italy)

Quantitative signal processing methods have been applied to a delta(18)O profile for a land-based stratigraphic section, extending from the upper part of lower Pleistocene to the lower part of middle Pleistocene. The section is well exposed with a continuous succession of muds and muddy silts, about 400 m thick, located in the southernmost part of Bradano Trough, near Montalbano Jonico in Basilicata (south Italy). The sampled part of the section is about 240 m thick, in which a foram benthic species (Cassidulina carinata) is continuously available for oxygen isotope ratio measurements. The aim of the data treatment is to discover how much of the Earth's orbital periodic movements, precession and obliquity, which represent the dominant periodicities in paleoclimatic variations from the base of the Pleistocene until 0.735 Myr BP, are responsible for the oscillations observed in the oxygen-18 record of the Montalbano Jonico section. A time framework of the section was constructed on the basis of calcareous nannofossil biostratigraphic analyses, preliminary magnetostratigraphic results and oxygen isotope correlation with the record from DSDP s607 (isotope data collected in the NOAA World Data Center). The resulting time-scale extends from 1.15 to 0.74 Myr. Power spectrum analysis was performed on the isotope data to illuminate the most important periodicity components of the Montalbano Jonico record. The periodic components of 41,000 and 21,000 yr are present in this record; the former associated with periodic changes in the tilt of Earth's axis and the latter with periodic changes with the precession of the equinoxes, as predicted by the astronomical theory of ice ages. They are, however, not the most important components of the power spectrum, in which a lower frequency component contains most of the variance. This low-frequency component is centered at a period around 208,000 yr. This periodicity seems not to be attributable to any known astronomical or paleoclimatic phenomenon. An attempt was made to verify if this periodicity was due to the composite effect of precession and obliquity signals together at different frequencies from their forcing frequencies. In order to investigate this effect, isotope data have been parameterized in terms of a sum of simple functions of precession and obliquity signals with unknown coefficients. The coefficients are estimated from the time series with the assumption that the best coefficients are those which minimize the 'noise' i.e. the difference between the data function and the precession and obliquity functions. Cross-spectra analyses were also performed on the data and the precession signal and on the data and the obliquity signal. The power spectrum of the residual 'noise' functions and the cross-spectra demonstrate that precession and obliquity signals are not in phase with the data at their forcing frequencies and so damp. The precession and obliquity signals were then shifted towards lower frequencies at equally spaced lags, the resultant 'noise' power spectra were plotted for every combination of lags of precession and obliquity. The results of this data processing demonstrate that it is possible to have a combination of precession and obliquity cyclicities that could be responsible for the signal with 208 kyr periodicity.

Journal Article↗

Pulse amplitude and frequency modulation of parathyroid hormone in primary hyperparathyroidism.

Pulsatile secretion of PTH in human subjects has been described recently. However, the pattern of PTH secretion in primary hyperparathyroidism (pHPT) remains to be characterized. In this study intact PTH was measured in 9 female patients with pHPT. As a control group we present data from 10 postmenopausal women. In addition to parameters of calcium metabolism and bone mass, PTH was measured in samples drawn over 4 or 6 h every 2 min by central venous blood sampling. The mean intact PTH concentration was 39.0 +/- 20.3 ng/L in healthy women and 193.2 +/- 127.9 ng/L in female patients with pHPT (P < 0.01). Pulse rhythm analysis showed significant differences between both groups for total PTH secretion per h (patients, 1196.4 +/- 485.3 ng/L; control group, 271.7 +/- 132.2 ng/L), basal PTH secretion per h (patients, 852.4 +/- 459.1 ng/L; control group, 185.6 +/- 126.1 ng/L), and average PTH secretion per pulse (patients, 112.6 +/- 54.8 ng/L; control group, 23.2 +/- 7.1 ng/L). Both patients and control subjects had, on an average, five pulses per h, and the pulsatile secretion accounted for about 50% of the total secretion. Differences in power spectrum analysis were consistent with these findings. The cross-correlation of PTH and calcium indicates an impaired feedback regulation in pHPT. PTH secretion in female patients with pHPT results from both an increased basal secretion and an increased amplitude of PTH pulses. Other features of secretion are the same as those in normal women. Feedback regulation of PTH and calcium is impaired in pHPT.

Aged↗

Studies on time-kill kinetics of different classes of antibiotics against veterinary pathogenic bacteria including Pasteurella, Actinobacillus and Escherichia coli.

A systematic analysis of the bacteriostatic/bactericidal effect of several antibiotics used in veterinary medicine was carried out by time-kill kinetic analysis using P. haemolytica, P. multocida, A. pleuropneumoniae, and E. coli. The antibiotics tested were enrofloxacin, danofloxacin, erythromycin, tilmicosin, penicillin G, ceftiofur and tetracycline. Unexpectedly, the antibiotics well characterized as bacteriostatic agents against human pathogens such as tetracycline and macrolides, showed bactericidal activity against P. haemolytica and A. pleuropneumoniae. In contrast, tetracycline and erythromycin were bacteriostatic and tilmicosin was bactericidal against P. multocida. In addition, P. multocida was killed by fluoroquinolones at a slower rate than the other bacteria. Spectrum analysis revealed that ceftiofur and tilmicosin were good substrates of the universal efflux pump, AcrA/B, but penicillin and tetracycline were not. The fluoroquinolones were modest substrates for AcrA/B.

Actinobacillus↗

Effect of chronic treatment with milnacipran on sleep architecture in rats compared with paroxetine and imipramine.

A number of studies in humans and various other species have shown that chronic treatment with antidepressants, such as tricyclics or selective serotonin reuptake inhibitors (SSRIs), induces a decrease or suppression of rapid eye movement (REM) sleep. The effect of a new selective serotonin and noradrenaline reuptake inhibiting (SNRI) antidepressant, milnacipran, on REM sleep has been investigated and compared with that of the SSRI, paroxetine, and the tricyclic, imipramine. Rats injected with vehicle or milnacipran twice a day showed, over 24 h, a similar amount of REM sleep, number and duration of REM sleep episodes to control rats. In contrast, rats treated acutely with imipramine or paroxetine showed a statistically significant decrease in the total quantity of REM sleep. The number of REM sleep episodes was decreased while their duration was increased. A more detailed analysis showed further that the quantity of REM sleep was decreased for the first 4 h following the 9 a.m. injection but not the 7 p.m. injection for milnacipran, during the first 6 h for paroxetine and for the entire light-dark period for imipramine. For all drugs, the quantities of slow-wave sleep and waking over 24 h were not significantly different from control conditions and no rebound of REM sleep occurred during the day following withdrawal. Power spectrum analysis revealed no global changes in the different electroencephalogram (EEG) waves (delta, theta, gamma) between the control condition and the different treatments during waking, slow-wave sleep or REM sleep. Taken together our results indicate that the SNRI, milnacipran, at therapeutic doses, induces only minor disturbances of REM sleep compared with a SSRI and tricyclic antidepressant used. Possible mechanisms responsible for the difference of action on REM sleep of milnacipran are discussed.

Adrenergic Uptake Inhibitors↗