[Stepwise factor analysis of the spatial organization of the EEG].
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Electroencephalography↗
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Evoked potentials from passive elbow movements. I. Quantitative spatial and temporal analysis.
Evoked potentials following perturbations of the forearm were recorded monopolarly at 8 scalp sites. Successive 10 msec bins of individual EPs were compared across subjects to determine intervals of consistent potential change. From this analysis it was possible to objectively sort subjects into two subpopulations with different common wave forms. Spatial vectors (potential gradient between two adjacent leads) were computed as well as Laplacian derivatives, to identify electrodes closest to source activity. Subsequently, temporal derivatives of the vectors were computed to define the timing of statistically significant response phases. To more precisely localize the largest potential gradients, component vectors (or their derivatives) in the Laplacians were resolved algebraically on a scaled representation of the scalp. Convergence of these resultant vectors from adjacent areas, identified zones of significant potential change which corresponded to known somatosensory areas. The two subpopulations had initial responses of similar topography localized to the central sulcal region. Subsequently, for one group the area of activated cortex expanded to include posterior parietal and more frontal areas. Prestimulus negative potential shifts had different distributions for the two groups and are described in relation to the poststimulus differences.
Adult↗
A quantitative analysis of the spatial organization of the vestibulo-ocular reflexes in lateral- and frontal-eyed animals--II. Neuronal networks underlying vestibulo-oculomotor coordination.
The neuronal connectivity underlying the vestibulo-ocular reflexes in cat and rabbit was evaluated in the light of quantitative data of the spatial orientation on semicircular canals and extraocular muscles. Neuronal connectivity was calculated using a matrix-analysis of the sensory and motor periphery, and of the brain stem pathways connecting semicircular canals and extraocular muscles. Two cases of vestibulo-ocular reflex compensation were considered. In the first case, vestibulo-oculor reflex compensation was assumed to be isotropic, i.e. the vestibulo-ocular reflex gain is the same for all directions of rotation. In the second case, the vestibulo-oculor reflex gain was assumed to be anisotropic with the "torsional" gain smaller than the "horizontal" and "vertical" gains. The theoretical calculation predicts that besides the principal vestibulo-ocular reflex pathways (classical three-neuron-arc connectivity), several accessory connections (other than principal connections, regardless of the synapses involved) exist which are characteristic for each species. These accessory connections were compared to physiological and anatomical data. In the cat theoretical connections for an isotropic vestibulo-ocular reflex gain agree with pathways observed experimentally, of which the most characteristic are excitatory connections to the superior rectus and inhibitory connections to the inferior rectus muscle from both of the anterior canals, and a mirror image pattern of connections from the posterior canals. In the rabbit experimentally obtained data and calculated connections rarely agree. However, for an anisotropic gain we find a higher rate of coincidence between experimental and theoretical connections. Our evaluation indicates, that accessory vestibulo-ocular reflex pathways serve to compensate for the incongruence between semicircular canal and extraocular muscle planes, at least in the cat. Available experimental data suggest an important role of a special subclass of accessory pathways via axon collaterals of principal projections (three-neuron-arc nature). With certain restrictions, the presented method of calculation promises to be a useful tool for a quantitative analysis of the vestibulo-ocular reflex.
Animals↗
A detailed analysis of rats' spatial memory in a probe trial of a Morris task.
In the present study, we evaluated the search behavior of rats during a probe trial of a Morris water escape task. More specifically, the spatial memory during different stages of a 2 min probe trial in different zones was examined. After rats were trained for 4 days with four trials per day, their spatial memory was tested in a first probe trial. The rats showed a preference for the target quadrant during each of four 30-s intervals. The time in the annulus decreased across the four 30-s intervals. The preference for the previous target quadrant was also observed in a second probe trial, when the rats had received additional training for 4 days with four trials per day. However, the time spent in the annulus was highest during the first 30-s of the probe trial, and was lower and similar during the next three 30-s intervals. Therefore, probe trials of 60s seem to underestimate the spatial ability of rats. It appears that using a quadrant for assessing the performance may overestimate the spatial ability of a rat. Our findings suggest that the evaluation of the spatial memory of rats in a probe trial in the Morris water escape task requires a more detailed analysis.
Animals↗
[Assessment of PCB pollution in spatial distribution and analysis of the PCB sources in sediments in China].
An assessment of the current state of pollution from polychlorinated biphenyls (PCBs) and PCBs spatial character in sediments are represented. The sources of PCBs and relative factors are also analyzed. Songhua River and Dalian Bay in Northeast, Baoding in Hebei Province, Ya-er Lake in Wuhan City, Pearl River and Taiwan Province in Southeast of China have relatively high level of PCBs, while most other regions have lower average concentrations of PCBs. Serious pollution of PCBs is found in some locations, most of which are harbors, industrial areas, the places where improper disposal of and leakage from PCB containers taken place Point source pollution is the common pattern of contamination, influenced primarily by local geographic, economic, management and historical factors, with Pearl River/Estuary as an example.
China↗
Spatial and temporal analysis of the microbial community in slow sand filters used for treating horticultural irrigation water.
An experimental slow sand filter (SSF) was constructed to study the spatial and temporal structure of a bacterial community suppressive to an oomycete plant pathogen, Phytophthora cryptogea. Passage of water through the mature sand column resulted in complete removal of zoospores of the plant pathogen. To monitor global changes in the microbial community, bacterial and fungal numbers were estimated on selective media, direct viable counts of fungal spores were made, and the ATP content was measured. PCR amplification of 16S rRNA genes and denaturing gradient gel electrophoresis (DGGE) were used to study the dynamics of the bacterial community in detail. The top layer (1 cm) of the SSF column was dominated by a variable and active microbial population, whereas the middle (50 cm) and bottom (80 cm) layers were dominated by less active and diverse bacterial populations. The major changes in the microbial populations occurred during the first week of filter operation, and these populations then remained to the end of the study. Spatial and temporal nonlinear mapping of the DGGE bands provided a useful visual representation of the similarities between SSF samples. According to the DGGE profile, less than 2% of the dominating bands present in the SSF column were represented in the culturable population. Sequence analysis of DGGE bands from all depths of the SSF column indicated that a range of bacteria were present, with 16S rRNA gene sequences similar to groups such as Bacillus megaterium, Cytophaga, Desulfovibrio, Legionella, Rhodococcus rhodochrous, Sphingomonas, and an uncharacterized environmental clone. This study describes the characterization of the performance, and microbial composition, of SSFs used for the treatment of water for use in the horticultural industry. Utilization of naturally suppressive population of microorganisms either directly or by manipulation of the environment in an SSF may provide a more reproducible control method for the future.
Bacteria↗
Normalization of microarray data using a spatial mixed model analysis which includes splines.
MOTIVATION: Microarray experiments with thousands of genes on a slide and multiple slides used in any experimental set represent a large body of data with many sources of variation. The identification of such sources of variation within microarray experimental sets is critical for correct deciphering of desired gene expression differences. RESULTS: We describe new methods for the normalization using spatial mixed models which include splines and analysis of two-colour spotted microarrays for within slide variation and for a series of slides. The model typically explains 45-85% of the variation on a slide with only approximately 1% of the total degrees of freedom. The results from our methods compare favourably with those from intensity dependent normalization loess methods where we accounted for twice as much uncontrolled and unwanted variation on the slides. We have also developed an index for each EST that combines the various measures of the differential response into a single value that researchers can use to rapidly assess the genes of interest.
Algorithms↗
Spatially resolved element analysis of historical violin varnishes by use of muPIXE.
External muPIXE has been used for characterisation of small samples of varnish from historical violins, and pieces of varnished wood from historical and modern stringed instruments. To obtain spatially resolved information about the distribution of elements across the varnish layers single-spot analysis, line-scans, and area-mapping were performed. Local resolution of approximately 20 mum was obtained from the 3 MeV, 1 nA proton micro-probe. Results from simultaneous multi-element determination of Na, Mg, Al, Si, P, S, K, Ca, Ti, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, As, Br, Rb, Sr, Ag, Cd, Sn, Ba, and Pb in historical varnishes are presented. Semi-quantitative evaluation of line-scans recorded on diverse historical varnishes is reported. The applied method is discussed in detail and the results obtained are critically reviewed and compared with those in the literature.
Journal Article↗
Dynamic contrast-enhanced imaging and analysis at high spatial resolution of MCF7 human breast tumors.
High resolution, dynamic GdDTPA-enhanced images of MCF7 human breast tumors in immunodeficient mice were analyzed at pixel resolution. The analysis, based on a physiological model, was performed by applying a nonlinear least-square algorithm using a color coded scale. The final output mapped at pixel resolution capillary permeability times surface area and fraction of extracellular volume, for each tumor slice. In addition, the output included assessment of the fit to the model by determining the proportion of variability (R2) for each pixel. The spatial variation in the R2 values served to identify regions where the predominant mechanism of enhancement was leakage from the intravascular volume to the extracellular volume (R2 close to 1). In regions with low R2 other mechanisms of enhancement appear to be dominating presumably diffusion within the extracellular space. As expected, in necrotic regions lacking microcapillaries and identified by analyzing T2-weighted images of the same tumors, the model failed to fit the dynamic contrast enhanced data. The heterogeneous distribution of the determined pathophysiological features demonstrates the importance of recording and analyzing breast tumor images at high spatial resolution.
Algorithms↗
Variogram analysis of the spatial genetic structure of continuous populations using multilocus microsatellite data.
A geostatistical perspective on spatial genetic structure may explain methodological issues of quantifying spatial genetic structure and suggest new approaches to addressing them. We use a variogram approach to (i) derive a spatial partitioning of molecular variance, gene diversity, and genotypic diversity for microsatellite data under the infinite allele model (IAM) and the stepwise mutation model (SMM), (ii) develop a weighting of sampling units to reflect ploidy levels or multiple sampling of genets, and (iii) show how variograms summarize the spatial genetic structure within a population under isolation-by-distance. The methods are illustrated with data from a population of the epiphytic lichen Lobaria pulmonaria, using six microsatellite markers. Variogram-based analysis not only avoids bias due to the underestimation of population variance in the presence of spatial autocorrelation, but also provides estimates of population genetic diversity and the degree and extent of spatial genetic structure accounting for autocorrelation.
Analysis of Variance↗
Phenylketonuria and complex spatial visualization: an analysis of information processing.
Recent neuropsychological studies have suggested that patients with early-treated phenylketonuria (PKU) and normal intelligence have a specific deficiency in solving complex spatial problems. In the present study a task involving the assembly of various shapes was used to compare the performance of 16 PKU patients and 11 sibling controls. Error rates generally were higher and response times slower among the PKU patients, but greater complexity did not produce differential changes in accuracy or speed in the PKU group compared to the controls. Correlations between task performance and IQ measures were significant for the PKU patients, but when IQ was controlled for the group differences vanished. The results suggest that choice of problem-solving strategy, attention span and accuracy of mental representation may be affected in PKU patients, despite efforts to maintain well-controlled phenylalanine concentrations in the blood.
Adolescent↗
Spatial and temporal analysis of human motor activity using noninvasive NIR topography.
The effect of motor activity on the left fronto-central region of the human brain was analyzed spatially and temporally by using noninvasive near-infrared light (NIR) topography. The changes in oxygenation states caused by motor activity were measured using intensity-modulated NIR spectroscopy at ten measurement positions on the head surface. The subject randomly performed unilateral finger opposition for 30 s as motor stimulation. When the subject performed contralateral (right) finger movement, significant increases in both oxygenated hemoglobin (oxy-Hb) and total hemoglobin (total-Hb) and decreases in deoxygenated hemoglobin (deoxy-Hb) were observed in a particular area. By mapping the static topograms of the changes of each Hb and comparing them with an anatomical image of MRI, it was found that the particular area was located on the motor cortex along the central sulcus. By mapping the dynamic topograms of the changes of total-Hb, which reflect the cerebral blood volume, and analyzing the spatiotemporal hemodynamic changes associated with the brain activity, it was found that the regional change in cerebral blood volume in the primary motor area overlaps the global change around the motor cortex. These results demonstrate that NIR topography can be used to effectively observe the human brain activity.
Adult↗
Laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) for spatially resolved trace analysis of early-medieval archaeological iron finds.
The suitability of laser ablation ICP-MS for minor and trace analysis of archaeological iron finds, produced by a direct reduction process in a 'bloomery' furnace, is reported. The analysis of elemental impurities in the iron can provide useful archaeometallurgical information on the production process and the provenance of the iron. Since, even after refinement, the iron resulting from this process may contain many inclusions (slag, charcoal, holes, etc.), a method should be used with sufficient spatial resolution to preclude the inclusions from the analysis. The ablation parameters are selected such that ablation craters of approx. 100 microm in diameter are obtained. The method is validated with low alloy steel and cast iron standard reference materials and by a comparative analysis with electron probe microanalysis (EPMA). The precision is limited mainly by the homogeneity of the iron, rather than by instrumental reproducibility. The advantages and drawbacks of the method are briefly compared with EPMA. Preliminary results from the analysis of archaeological iron samples from excavations at Develier-Courtetelle (Canton Jura, CH), Neftenbach (Canton Zurich, CH), Wartau (Canton St Gallen, CH) and Mont Chemin (Canton Valais, CH) are given.
Journal Article↗
Stability of active systems with a spatially periodic activity: Analysis of a simple model and application to the boiling crisis problem.
We investigate theoretically the possibility to control the transition between two metastable states in reactive systems by imposing a spatial modulation. In particular, we consider the technologically very important case of the transition between the low temperature (nucleate boiling) and the high temperature (film boiling) phases of boiling of a liquid over a heat generating element, also known as the boiling crisis. With the help of a simplified model, we demonstrate that the dangerous regime where the high temperature phase invades the whole system requires a larger heat power in a periodically spatially modulated system, than in a uniform system. The possibility that a local perturbation, such as a small gas bubble, may induce locally a transition to the film boiling state is also considered. We show that the transition to the film boiling regime is hindered in a spatially periodic system. (c) 2002 American Institute of Physics.
Journal Article↗
Proteomic analysis reveals the spatial heterogeneity of immobilized Taxus cuspidata cells in support matrices.
A proteomic approach was used to study the responses of Taxus cuspidata cells to local microenvironments in different zones of immobilized support matrices. Analysis of protein spots by 2-DE revealed significant differences in the abundance of 31 spots, 28 spots, and 23 spots in outer, middle, and central zone cells between the immobilized and suspended cells. Six of these proteins, identified by MALDI-TOF-MS, were involved in the regulation of carbohydrate, nitrogen, and sulfur metabolisms. Immobilization triggered an increase in taxol production of the immobilized cells in the middle and central zones compared to that of the suspended cells. A negative relation between taxol production and the mitotic index was observed in the cells in the immobilization support matrix. Cells in the outer zone had high mitotic index and low taxol production, while cells in the middle and central zones showed low mitotic index and high taxol production. The abundance of S-adenosylmethionine synthetase, which was identified as one of the differentially expressed proteins, was positively correlated to the cell division activity in the immobilized cell cultures.
Amino Acid Sequence↗
Coordinate-based voxel-wise meta-analysis: dividends of spatial normalization. Report of a virtual workshop.
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Brain Mapping↗
Neuronal and glial cell types revealed by NADPH-diaphorase histochemistry in the retina of a teleost fish, the grass goby (Zosterisessor ophiocephalus, Perciformes, Gobiidae).
The grass goby is a mud-burrowing fish with a rich retinal vasculature appropriate to its hypoxic habitat. NADPH-diaphorase histochemistry was performed on retinal sections and wholemounts to reveal cells that contain nitric oxide synthase and so may be presumed to synthesise nitric oxide, a gaseous intercellular messenger with many roles including vasodilation. Structures that were consistently stained by this method included cone ellipsoids, horizontal cells, Müller cells and their processes, large displaced ganglion cells in the inner nuclear layer (identified by their axons), large interstitial ganglion cells in the inner plexiform layer, and capillary endothelial cells. In wholemounts, horizontal cells were seen to form a regular pattern, contacting each other at their dendritic terminals. Some cells in the ganglion cell layer were weakly stained, but stained bipolar and amacrine cells were not seen. The diaphorase-positive large ganglion cells all formed large, sparsely branched dendritic trees, arborizing near the scleral border of the inner plexiform layer. The displaced and interstitial cells seemed to belong to distinct morphological types, the interstitial cells having smaller somata and trees. Analysis of their spatial distributions in one representative retina confirmed this: the displaced cells formed a highly regular mosaic with a mean spacing (nearest-neighbour distance) of 303 microm, whereas the interstitial cells formed a separate mosaic, almost as regular but with a smaller mean spacing of 193 microm, rising to 217 microm in a sample that excluded the area retinae temporalis. Spatial correlogram analysis showed that these two mosaics were spatially independent. Nitric oxide probably has many roles in the retina. The presence of its synthetic enzyme in Müller cells, which communicate with retinal blood vessels, is consistent with a role in the control of retinal blood flow. Its function in large, mosaic-forming retinal ganglion cells is unknown.
Animals↗
Point pattern analysis of the spatial proximity of residences prior to diagnosis of persons with Hodgkin's disease.
There is some evidence to suggest that the etiology of Hodgkin's disease includes an infectious component. One approach to investigating this possibility is a formal assessment of the geographic and temporal variation in the incidence of the disease. The present study was designed to better evaluate space-time patterns of residence prior to diagnosis of persons with Hodgkin's disease. Lifetime residential histories were obtained from 279 incident cases of Hodgkin's disease diagnosed between 1974 and 1982 in a defined population in northwestern Washington State, and a similar number of population controls matched to the cases by age, sex, and socioeconomic status. A method of point pattern analysis was modified for use in this context to compare the spatial proximity of case residences to that expected under the null assumption of no difference between the spatial pattern of case and control residences. Analyses were applied within temporal groupings of residences specified a priori assuming 1) no specified latency, 2) four different 5-year latent intervals, and 3) three age at exposure intervals. Assuming no latency, there is no evidence that case residences are more or less clustered than would be expected by chance. Assuming latent intervals of up to 15 years prior to diagnosis, case residences are less clustered than expected, particularly among those who developed Hodgkin's disease after the age of 40 years. In contrast, there is suggestive evidence that persons diagnosed with Hodgkin's disease after age 40 years lived closer together than expected as young children and teenagers. These results illustrate the need to focus such analyses on specific time intervals defined a priori to most likely represent periods of greatest etiologic relevance. To the extent that these findings are not the result of some unknown artifact of the method itself, they may serve to focus additional attention on childhood environment as a particularly important period in the etiology of this disease. Furthermore, the analytic method employed may be useful in identifying space-time clustering using population-based data in other etiologic settings.
Adolescent↗