Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “hypothesis testing”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 937 records · Page 52Linked to original sources

Analysis of cost data in randomized trials: an application of the non-parametric bootstrap.

Health economic evaluations are now more commonly being included in pragmatic randomized trials. However a variety of methods are being used for the presentation and analysis of the resulting cost data, and in many cases the approaches taken are inappropriate. In order to inform health care policy decisions, analysis needs to focus on arithmetic mean costs, since these will reflect the total cost of treating all patients with the disease. Thus, despite the often highly skewed distribution of cost data, standard non-parametric methods or use of normalizing transformations are not appropriate. Although standard parametric methods of comparing arithmetic means may be robust to non-normality for some data sets, this is not guaranteed. While the randomization test can be used to overcome assumptions of normality, its use for comparing means is still restricted by the need for similarly shaped distributions in the two groups. In this paper we show how the non-parametric bootstrap provides a more flexible alternative for comparing arithmetic mean costs between randomized groups, avoiding the assumptions which limit other methods. Details of several bootstrap methods for hypothesis tests and confidence intervals are described and applied to cost data from two randomized trials. The preferred bootstrap approaches are the bootstrap-t or variance stabilized bootstrap-t and the bias corrected and accelerated percentile methods. We conclude that such bootstrap techniques can be recommended either as a check on the robustness of standard parametric methods, or to provide the primary statistical analysis when making inferences about arithmetic means for moderately sized samples of highly skewed data such as costs.

Cognitive Behavioral Therapy↗

Animal models of depression reflect changing views on the essence and etiology of depressive disorders in humans.

1. Since it is ethically unacceptable to use human subjects to conduct manipulative experimental hypothesis-testing research on major depression, investigators interested in the development, the substrates or the mechanisms of treatment of depressive disorders have turned to observational models with humans or to interactive models with animals. 2. One of the earliest animal models of depression, the infant/mother separation in monkeys, is based on the Freudian notion of the loss-inward directed anger-depression connection. 3. The hypothesis that depression is caused by stress led to the development of numerous animal models of depression based on the behavioral abnormalities induced in animals, usually rats but occasionally other species, by exposure to prolonged or intense stress. 4. The selective therapeutic efficacy of antidepressant drugs suggested the hypothesis that depression is caused by a neurochemical abnormality that is alleviated by chronic exposure to antidepressants. This hypothesis has been refined to state that depressive disorders are caused by genetically based neurochemical dysregulation of neural activity in the limbic system. 5. Models based on the limbic dysfunction hypothesis could be used to explore the specific neural substrates of depression. At present, the rat with limbic dysfunction induced by olfactory bulbectomy appears to fulfill best the requirements for a model of depression. The future development or discovery of a genetic strain of animals that shows comparable behavioral and neurovegetative deficits and similar selective drug responses to those seen in patients with depressive disorder, would make tremendous contributions to the understanding not only of depression but also of the neurobiology of the limbic system.

Animals↗

Early intervention and a five year follow up in young adults with a short duration of untreated psychosis: ethical implications.

In a Dutch treatment intervention study of patients (n=76) with first psychotic episodes of schizophrenia the hypothesis tested was whether early differential treatment after an acute psychotic break improved outcome as compared with other studies. Patients had a relatively short duration of untreated psychosis. No significant effect between two treatment conditions on relapse rate was found. The 15-month intervention program kept the psychotic relapse rate as low as 15%; lower than comparable studies. Thus, the initial results were in support of the hypothesis. After completion of the 15 months study, patients were referred to other agencies and followed for five years. Results of the follow up study showed that the low relapse rate could not be maintained. Of the remaining 71 patients of the initial sample, 52% had one or more psychotic relapses, 25% developed chronic positive symptoms and 23% did not have another psychotic episode. In addition, the level of social functioning turned out to be low: the majority of patients were dependent upon their parents, few held down a skilled or paid job and also their quality of life seemed low, results indicate that early intervention may improve short term but not long term outcome in schizophrenia. Our results also suggest that referral to other mental health agencies after intervention is not sufficient. Continuity of outpatient care, including continuity of a professional relationship, continuity of support for the family, and the continuity in management of illness, medication and stress may be a key issue in the first five years after the onset of psychosis in schizophrenia. Early recognition and intervention may not nearly be as important for outcome as continuity in care and caregivers. At present, however, it remains questionable whether early intervention programs in first-episode patients with a short duration of untreated psychosis can offer the prospect of altering the course of schizophrenia without a sustained comprehensive treatment program.

Adolescent↗

Evaluation of the gemini infusion pump for the safe delivery of peripheral blood progenitor cells (stem cells).

The purpose of this in vitro study was to determine whether the Gemini PC-2TX infusion pump could safely deliver peripheral stem cells (PSC) for an autologous PSC transplant. For purposes of hypothesis testing, it was assumed that there would be no significant difference in CD34+ cell counts and colony-forming units-granulocyte, macrophage (CFU-GM) when the PSCs were administered by an IMED PC-2TX infusion pump as opposed to an intravenous push method. The American Red Cross collected 50-ml samples of PSCs from four donors by apheresis. These cells were tested for CD34+ using flow cytometry and for functional progenitor cells using a CFU-GM assay. The cells were cryopreserved after testing. For our study, samples were tested simultaneously at a single facility. Each sample was individually thawed and a baseline thaw sample collected; 10 ml of the donor specimen was pushed through a syringe into a specimen container (intravenous push sample). The remainder of the specimen was infused through the IMED Gemini PC-2TX pump into a specimen container (intravenous pump sample). All samples were assayed for CD34+ cell counts and CFU-GM. Data analyses were conducted using the t-test for paired samples, with values of P < 0.05 considered significant. Results failed to demonstrate a statistically significant difference between the CD34+ or CFU-GM results of the intravenous push and intravenous pump specimens. Additionally, we failed to find a statistically significant difference when we compared the intravenous push and the intravenous pump specimens with the baseline thaw sample. The results of this study support the hypothesis that the Gemini PC-2TX infusion pump can safely deliver PSCs for the purposes of stem cell transplantation.

Antigens, CD34↗

Interpreting statistics in the urological literature.

PURPOSE: Knowledge of statistical terminology and the ability to critically interpret research findings are critical skills in the practice of evidence based medicine. MATERIALS AND METHODS: We provide a series of nontechnical explanations of basic statistical concepts commonly encountered in the urological literature. In addition, we provide examples of common statistical pitfalls to increase awareness of limitations to consider when applying research findings to practice. RESULTS: Statistical goals encountered in the urological literature can be broadly categorized as summarizing outcome variables, comparing 2 or more groups, measuring association among variables or predicting 1 variable from another. Errors frequently include the use of an inappropriate test for the data type of interest or using statistical testing in a manner that increases the likelihood of false-positive results. Such errors pose a threat to the validity of research findings and they may undermine study conclusions. CONCLUSIONS: Editors and reviewers alike should strive for high standards of statistical analysis and reporting, and promote the publication of high quality evidence in the urological literature. The understanding of basic statistical concepts and the principles of the hypothesis testing framework is essential to the critical appraisal process and, therefore, important to all urologists. Statistical literacy should be fostered through educational materials and courses in the urological community.

Data Interpretation, Statistical↗

Unemployment and foster home placements: estimating the net effect of provocation and inhibition.

OBJECTIVES: This study sought, first, to explain and reconcile the provocation and inhibition theories of the effect of rising unemployment on the incidence of antisocial behavior. Second, it tested the hypothesis, implied by the provocation and inhibition theories, that the relationship between unemployment and foster home placements forms an inverted "U." METHODS: The hypothesis was tested with data from California for 137 months beginning in February 1984. RESULTS: Findings showed that the hypothesis was supported. CONCLUSIONS: Rising joblessness increases the incidence of foster home placements among families that lose jobs or income. Levels of joblessness that threaten workers who remain employed, however, inhibit antisocial behavior and reduce the incidence of foster home placements. This means that accounting for the social costs of unemployment is more complicated than assumed under the provocation theory.

Adaptation, Psychological↗

Randomization tests for assessing the equality of area under curves for studies using destructive sampling.

Testing the equality of the area under a curve (AUC) for different dose groups is frequently done in pharmacokinetic research. Equality of AUCs is one indicator of bioequivalence. When the experimental unit must be sacrificed to obtain a response, AUC can be simply estimated using a linear combination of response means at various time points. The distribution of this estimator is simply obtained using standard statistical theory, and statistical hypothesis tests are easily constructed. These tests assume a normal distribution of responses at each time point (or at least large enough samples to assure that the mean response is normally distributed). The applicability of this test to cases of non-normal response distributions when small numbers of observations are sampled at each time point is questionable. Randomization tests are suggested for this problem. These tests provide a valuable alternative to this normal-theory test. Discussion of the assessment of dose proportionality is also presented.

Administration, Inhalation↗

Alteration of photoresponses involved in diel vertical migration of a crab larva by fish mucus and degradation products of mucopolysaccharides.

Photoresponses involved in the descent phase of nocturnal diel vertical migration (DVM) of larvae of the crab Rhithropanopeus harrisii were measured in a laboratory system that mimicked the underwater angular light distribution. The test hypothesis was that kairomones from fish that activate zooplankton photoresponses involved in DVM are derived from polysaccharides from the external mucus of fishes. Studies considered fish mucus from the mummichog (Fundulus heteroclitus) and disaccharides (originating from chondroitin sulfate A and heparin polysaccharides) that are likely constituents of fish mucus. R. harrisii larvae descend at sunrise with an isolume and remain near the isolume during the day. Since depth maintenance near the isolume depends upon a negative phototaxis, the lowest light intensity (threshold) that induces this response was used to quantify the effects of the test chemicals. It was predicted that exposure to fish kairomones would lower the photoresponse threshold, thereby resulting in larvae remaining deeper in the water column where light for visual predation was reduced. The photoresponse threshold declined as the concentration of fish mucus increased. Disaccharides originating from chondroitin sulfate A and heparin also decreased the photoresponse threshold as compared to responses in aged, filtered seawater. Collectively, the results support the hypothesis and indicate that disaccharide degradation products of predator mucus containing sulfated and acetylated amines can serve as kairomones.

Journal Article↗

Metal-on-metal hip simulator study of increased wear particle surface area due to 'severe' patient activity.

This study investigated changes in metal-on-metal (MOM) hip wear and wear particle characteristics arising from a more aggressive patient activity level compared with normal walking. The test hypothesis was that 'severe'-gait conditions will change wear, wear particle sizes, and morphology owing to a decline in joint lubrication. Four carbon MOM hip bearings 40 mm high were subjected to normal-walking and fast-jogging simulations in an orbital hip joint simulator with 25 per cent alpha-calf serum as a lubricant. Co-Cr-Mo wear particles were extracted using an enzymatic method, and prolate ellipsoid equations were used to estimate particle volume and surface area. Fast-jogging simulations generated a sevenfold increase in volumetric wear, a 33 per cent increase in mean wear particle size, and a threefold increase in the number of larger (needle) particles compared with walking. This resulted in a twentyfold increase in total wear particle surface area per 10(6) cycles compared with walking, thereby confirming our hypothesis. The clinical significance of this result suggests that highly active MOM patients may exhibit greater ion release than less active patients.

Biocompatible Materials↗

Testing pairwise contrasts in one-way analysis of variance designs.

Research in the behavioral and health sciences frequently involves the application of one-factor analysis of variance (ANOVA) models. The goal may be to compare several independent groups of subjects on a quantitative dependent variable or, alternatively, to compare measurements made on different occasions or under different conditions on a single group of subjects. If there is reason to believe that there are differences among the groups (or occasions or conditions), the researcher frequently wishes to compare the means in a pairwise fashion. Although the procedures for conducting omnibus hypothesis tests for one-factor ANOVA models are familiar to most researchers, the issues that must be considered in choosing pairwise multiple comparison procedures (MCPs) are not as well understood. In this paper, the selection of pairwise MCPs for one-factor ANOVA models is considered, following a discussion of Type I error and power issues as they apply to the testing of multiple hypotheses. Although the paper focuses on the independent-sample case, repeated measures models are considered briefly as well.

Analysis of Variance↗

Modeling the uncertainty of surgical procedure times: comparison of log-normal and normal models.

BACKGROUND: Medical institutions are under increased economic pressure to schedule elective surgeries efficiently to contain the costs of surgical services. Surgical scheduling is complicated by variability inherent in the duration of surgical procedures. Modeling that variability, in turn, provides a mechanism to generate accurate time estimates. Accurate time estimates are important operationally to improve operating room utilization and strategically to identify surgeons, procedures, or patients whose duration of surgeries differ from what might be expected. METHODS: The authors retrospectively studied 40,076 surgical cases (1,580 Current Procedural Terminology-anesthesia combinations, each with a case frequency of five or more) from a large teaching hospital, and attempted to determine whether the distribution of surgical procedure times more closely fit a normal or a log-normal distribution. The authors tested goodness-of-fit to these data for both models using the Shapiro-Wilk test. Reasons, in practice, the Shapiro-Wilk test may reject the fit of a log-normal model when in fact it should be retained were also evaluated. RESULTS: The Shapiro-Wilk test indicates that the log-normal model is superior to the normal model for a large and diverse set of surgeries. Goodness-of-fit tests may falsely reject the log-normal model during certain conditions that include rounding errors in procedure times, large sample sizes, untrimmed outliers, and heterogeneous mixed populations of surgical procedure times. CONCLUSIONS: The authors recommend use of the log-normal model for predicting surgical procedure times for Current Procedural Terminology-anesthesia combinations. The results help to legitimize the use of log transforms to normalize surgical procedure times before hypothesis testing using linear statistical models or other parametric statistical tests to investigate factors affecting the duration of surgeries.

Databases, Factual↗

Assessing organisational development in primary medical care using a group based assessment: the Maturity Matrix.

OBJECTIVE: To design and develop an instrument to assess the degree of organisational development achieved in primary medical care organisations. DESIGN: An iterative development, feasibility and validation study of an organisational assessment instrument. SETTING: Primary medical care organisations. PARTICIPANTS: Primary care teams and external facilitators. MAIN OUTCOME MEASURES: Responses to an evaluation questionnaire, qualitative process feedback, hypothesis testing, and quantitative psychometric analysis (face and construct validity) of the results of a Maturity Matrix assessment in 55 primary medical care organisations. RESULTS: Evaluations by 390 participants revealed high face validity with respect to its usefulness as a review and planning tool at the practice level. Feedback from facilitators suggests that it helped practices to prioritise their organisational development. With respect to construct validity, there was some support for the hypothesis that training and non-training status affected the degree and pattern of organisational development. The size of the organisation did not have a significant impact on the degree of organisational development. CONCLUSION: This practice based facilitated group evaluation method was found to be both useful and enjoyable by the participating organisations. Psychometric validation revealed high face validity. Further developments are in place to ensure acceptability for summative work (benchmarking) and formative feedback processes (quality improvement).

Benchmarking↗

Effects of resin hydrophilicity on dentin bond strength.

The purpose of this study was to determine if hydrophobic resins can be coaxed into dentin wet with ethanol instead of water. The test hypothesis was that dentin wet with ethanol would produce higher bond strengths for hydrophobic resins than would dentin wet with water. This study examined the microtensile bond strength of 5 experimental adhesives (50 wt% ethanol/50% comonomers) of various degrees of hydrophilicity to acid-etched dentin that was left moist with water, moist with ethanol, or air-dried. Following composite buildups, hourglass-shaped slabs were prepared from the bonded teeth for microtensile testing. For all 3 types of dentin surfaces, higher bond strengths were achieved with increased resin hydrophilicity. The lowest bond strengths were obtained on dried dentin, while the highest bond strengths were achieved when dentin was bonded moist with ethanol. Wet-bonding with ethanol achieved higher bond strengths with hydrophobic resins than were possible with water-saturated matrices.

Analysis of Variance↗

Pudendal nerve decompression in perineology: a case series.

BACKGROUND: Perineodynia (vulvodynia, perineal pain, proctalgia), anal and urinary incontinence are the main symptoms of the pudendal canal syndrome (PCS) or entrapment of the pudendal nerve. The first aim of this study was to evaluate the effect of bilateral pudendal nerve decompression (PND) on the symptoms of the PCS, on three clinical signs (abnormal sensibility, painful Alcock's canal, painful "skin rolling test") and on two neurophysiological tests: electromyography (EMG) and pudendal nerve terminal motor latencies (PNTML). The second aim was to study the clinical value of the aforementioned clinical signs in the diagnosis of PCS. METHODS: In this retrospective analysis, the studied sample comprised 74 female patients who underwent a bilateral PND between 1995 and 2002. To accomplish the first aim, the patients sample was compared before and at least one year after surgery by means of descriptive statistics and hypothesis testing. The second aim was achieved by means of a statistical comparison between the patient's group before the operation and a control group of 82 women without any of the following signs: prolapse, anal incontinence, perineodynia, dyschesia and history of pelvi-perineal surgery. RESULTS: When bilateral PND was the only procedure done to treat the symptoms, the cure rates of perineodynia, anal incontinence and urinary incontinence were 8/14, 4/5 and 3/5, respectively. The frequency of the three clinical signs was significantly reduced. There was a significant reduction of anal and perineal PNTML and a significant increase of anal richness on EMG. The Odd Ratio of the three clinical signs in the diagnosis of PCS was 16,97 (95% CI = 4,68 - 61,51). CONCLUSION: This study suggests that bilateral PND can treat perineodynia, anal and urinary incontinence. The three clinical signs of PCS seem to be efficient to suspect this diagnosis. There is a need for further studies to confirm these preliminary results.

Adult↗

Partitioning species diversity across landscapes and regions: a hierarchical analysis of alpha, beta, and gamma diversity.

Species diversity may be additively partitioned within and among samples (alpha and beta diversity) from hierarchically scaled studies to assess the proportion of the total diversity (gamma) found in different habitats, landscapes, or regions. We developed a statistical approach for testing null hypotheses that observed partitions of species richness or diversity indices differed from those expected by chance, and we illustrate these tests using data from a hierarchical study of forest-canopy beetles. Two null hypotheses were implemented using individual- and sample-based randomization tests to generate null distributions for alpha and beta components of diversity at multiple sampling scales. The two tests differed in their null distributions and power to detect statistically significant diversity components. Individual-based randomization was more powerful at all hierarchical levels and was sensitive to departures between observed and null partitions due to intraspecific aggregation of individuals. Sample-based randomization had less power but still may be useful for determining whether different habitats show a higher degree of differentiation in species diversity compared with random samples from the landscape. Null hypothesis tests provide a basis for inferences on partitions of species richness or diversity indices at multiple sampling levels, thereby increasing our understanding of how alpha and beta diversity change across spatial scales.

Animals↗

A comparative trial of the safety and efficacy of 0.1 percent pemirolast potassium ophthalmic solution dosed twice or four times a day in patients with seasonal allergic conjunctivitis.

PURPOSE: To compare efficacy and safety between twice-daily and four-times-daily regimens of pemirolast 0.1% in allergic conjunctivitis patients. METHODS: This investigator-masked trial recruited 169 patients, with a positive skin prick test, +2 itching and hyperemia. Patients were randomized to two times daily (t.i.d.) or four times daily (q.i.d.) treatment during allergy season. Evaluation was at 0, 2 and 4 weeks, with itching and hyperemia at week 4 as the primary endpoints. Analysis used last observation carried forward (LOCF) and analysis of variance (ANOVA) for efficacy, factoring treatment and center variations. The basis of the statistical evaluation was to confirm parity between two treatments, via noninferiority hypothesis testing. A 95% confidence interval (CI) with an upper limit of < or = 0.5 was set to assess non-inferiority or to conclude if schedules were statistically similar. RESULTS: B.i.d. and q.i.d. baselines were similar, respectively, for itching (2.6 and 2.8) and hyperemia (2.3 and 2.2). Week 4 itching was statistically non-inferior between treatments (1 b.i.d. versus 0.8 q.i.d.), with a mean treatment difference of 0.17 (-0.13, 0.47, Delta < or = 0.5). Week 4 hyperemia was comparable (1.2 for b.i.d. versus 1.0 for q.i.d). Week 2 scores and mean change from baseline (weeks 2 and 4), patient diary data, and investigator assessments were comparable. Both regimens were well tolerated with no differences in adverse events were observed. CONCLUSIONS: B.i.d. dosing was statistically non-inferior to q.i.d. dosing with respect to itching and hyperemia. Both regimens were similarly well tolerated in allergic conjunctivitis patients.

Adolescent↗

Degrees of differential gene expression: detecting biologically significant expression differences and estimating their magnitudes.

MOTIVATION: Many methods of identifying differential expression in genes depend on testing the null hypotheses of exactly equal means or distributions of expression levels for each gene across groups, even though a statistically significant difference in the expression level does not imply the occurrence of any difference of biological or clinical significance. This is because a mathematical definition of 'differential expression' as any non-zero difference does not correspond to the differential expression biologists seek. Furthermore, while some current methods account for multiple comparisons in hypothesis tests, they do not accordingly adjust estimates of the degrees to which genes are differentially expressed. Both problems lead to overstating the relevance of findings. RESULTS: Testing whether genes have relevant differential expression can be accomplished with customized null hypotheses, thereby redefining 'differential expression' in a way that is more biologically meaningful. When such tests control the false discovery rate, they effectively discover genes based on a desired quantile of differential gene expression. Estimation of the degree to which genes are differentially expressed has been corrected for multiple comparisons. AVAILABILITY: R code is freely available from http://www.davidbickel.com and may become available from www.r-project.org or www.bioconductor.org SUPPLEMENTARY INFORMATION: Applications to cancer microarrays, an application in the absence of differential expression, pseudocode, and a guide to customizing the methods may be found at www.davidbickel.com and www.mathpreprints.com

Algorithms↗

Robustness of path analysis of family resemblance against deviations from multivariate normality.

Path analysis is one of several methods available for quantitative genetic analysis, providing for both tests of hypotheses and estimates of relevant parameters. Central to the theory is the assumption that the observations follow a multivariate normal distribution within families. The purpose of the present investigation is to assess the effects of a certain type of departures from multivariate normality using quantitative family data on lipid and lipoprotein levels. The results show that even large departures produce reasonably unbiased parameter estimates. Whereas moderate departures lead to few inferential errors in hypothesis testing, gross departures from multivariate normality may have considerable effects on likelihood ratio tests.

Environment↗