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PubMed2006

Synthesis and characterization of metal-organic frameworks based on 4-hydroxypyridine-2,6-dicarboxylic acid and pyridine-2,6-dicarboxylic acid ligands.

The self-assembly of 4-hydroxypyridine-2,6-dicarboxylic acid (H(3)CAM) and pyridine-2,6-dicarboxylic acid (H2PDA) with Zn(II) salts under hydrothermal conditions gave two novel coordination polymers {[Zn(HCAM)].H2O}n (1) and {[Zn(PDA)(H2O)(1.5)]}n (1a). 1 and 1a comprise of a 2D (4,4) net and a 1D zigzag chain, respectively, in which a new coordination mode of PDA is found. The reactions of H(3)CAM and H2PDA with Nd2O3 in the M/L ratio 2:3 gave {[Nd2(HCAM)3(H2O)4].2H2O}n (2) and {[Nd(2)(PDA)3(H2O)(3)].0.5H2O}n (2a). In 2, a square motif as a building block constructed by four Nd(III) ions was further assembled into a highly ordered 2D (4,4) grid. 2a is a 3D microporous coordination polymer. It is interesting to note that, when Ln(III) salts rather than oxides were employed, the reaction produced {[Ln(CAM)(H2O)3].H2O}n (Ln = Gd, 3; Dy, 4; Er, 5) for H(3)CAM and {[Gd2(PDA)3(H2O)3].H2O}n (3a) for H2PDA. 3-5 are 2D coordination polymers with a 3(3)4(2) uniform net, where hydroxyl groups of H3CAM coordinate with metal ions. The reaction of H3CAM and Er2O3 instead of Er(ClO4)3 produced {[Er2(HCAM)3(H2O)4].2H2O}n (6). The compounds 2a and 3a, 2 and 6 are isomorphous. The stereochemical and supramolecular effects of hydroxyl groups result in the dramatic structural changes from 1D (1a) to 2D (1) and from 2D (2) to 3D (2a). When Ln(III) salts instead of Ln2O3 were employed in the hydrothermal reactions with H(3)CAM, different self-assembly processes gave the products of different metal/ligand ratio with reactants (3-5).

Journal Article↗
PubMed2007

Crystal-engineering studies of coordination polymers and a molecular-looped complex containing dipyridyl-amide ligands.

We report herein crystal-engineering studies of coordination polymers and a molecular-looped complex containing two dipyridyl-amide ligands, 1,3-bis-pyridin-4-ylmethyl urea (L1) and N,N'-bis-4-methylpyridyl oxalamide (L2). The reaction of Cd(OAc)2 with L1 gives rise to [Cd(OAc)2(L1)]n (1), a 1-D chain through coordination to two L1 and two acetate ligands, and then the axial coordination to one urea's carbonyl group through the third L1 ligand leads 1 to form "a dimer of 1-D chains". With a slight change in the structural backbone from L1 to L2, the reaction of L2 with Cd(OAc)2 gives [Cd(OAc)2(L2)(H2O)]n (2), a 1-D chain structure. The reaction of Cd(NO3)2, instead of Cd(OAc)2, with L2 gives [Cd(NO3)2(L2)3/2]n (3), where the coordinated-anion effect on the assembly process has been observed for 2 and 3. The former forms a 1-D chain structure, and the latter, a 2-D sheet structure, depending on the coordinated anions used. [HgCl2(L1)]n (4) and [CuCl2(L2)]n (5), which are 1-D chain structures, show tetrahedral [Hg(II)] and square-planar [Cu(II)] centers, respectively. Surprisingly, 4 shows a typical amide-amide hydrogen bonding and 5 shows none. Instead, a hydrogen-bonding interaction between Cl and the amide group is observed in 5. Finally, the different structural conformation of L2 (a syn or anti form) leads to the formation of different structural motifs, coordination polymers (2, 3, and 5 with an anti form), and a macrocycle ([Pd(PPy)(L2)]2(ClO4)2 (6) with a syn form, PPy = 2-phenylpyridine). Each side of the boat form of 6 (pseudo-cyclohexane) ranges from 6.12 to 6.39 A, and the molecular loop is further hydrogen-bonded to stack into a 1-D hydrogen-bonded framework with a ladder pattern through amide-amide hydrogen bonding. Interestingly, one ClO4- anion is encapsulated inside the cavity through multiple CH...O interactions.

Journal Article↗
PubMed1996

Self-Assembly of an 11-Component Cylindrical Inorganic Architecture: Electrospray Mass Spectrometry and Thermodynamic Studies.

Two hexaphenylhexaazatriphenylene L(1)()and three quaterpyridine L(2)() ligands are well-known to associate around six copper(I) ions to form a cylindrical inorganic cage 1. Spectrophotometric and electrospray mass spectrometry (ESMS) titrations have been conducted to gain information on the thermodynamics and the formation pathway of the assembly 1. From these data, the nature of intermediates present in solution was determined and the association constants of these species were calculated. It was also found that this assembling process occurs with positive cooperativity.

Journal Article↗
PubMed1999

Deprotonation-Induced Enantioselective Aggregation and Deprotonation-Induced Ligand Rearrangement of Copper(II) Complexes Yield 1D Homochiral and Heterochiral Chains and a Cyclic Tetramer, Respectively.

The copper(II) complexes of protonated pentadentate Schiff-base ligands with [Cu(H(2)L(n))](ClO(4))(2) formula (n = 3-6, 3-6) have been synthesized and characterized (H(2)L(3) = N-((2-methylimidazol-4-yl)methylene)-3-aminpropyl-N'-((2-methylimidazol-4-yl)methylene)-4'-aminobutylamine, H(2)L(4) = N-((2-phenylimidazol-4-yl)methylene)-3-aminpropyl-N'-((2-phenyl-imidazol-4-yl)methylene)-4'-aminobutylamine, H(2)L(5) = N,N'-bis((2-phenylimidazol-4-yl)methylene)-3,3'-diaminodipropylmethylamine, H(2)L(6) = N-((2-methylimidazol-4-yl)methylene)-2-aminoethyl-N'-((2-methylimidazol-4-yl)methylene)-3'-aminopropylamine. The mono-deprotonated complexes 3', 4', and 5' contain one imidazole and one imidazolate groups per unit and are Delta (clockwise) or Lambda (anticlockwise) enantiomorphs due to the spiral arrangement of the ligand around copper(II) ion. They function as chiral building components for a self-assembly process resulting from the formation of hydrogen bonds between the imidazole and imidazolate groups of adjacent units to yield 1D zigzag-chain structures. The distance between hydrogen-bonded nitrogen atoms is 2.81(2), 2.832(9), and 2.875(9) Å for 3', 4', and 5', respectively. The crystal lattice of 3' yielded either.DeltaDeltaDelta. or.LambdaLambdaLambda. isotactic 1D zigzag-chains, while the crystal lattices of 4' and 5' yielded.DeltaLambdaDeltaLambda. syndiotactic 1D zigzag-chains. In 3', two adjacent methyl groups at the 2-position connected by hydrogen bond array in the same direction, thus allowing homochiral aggregation of the complex molecules in a 1D chain. On the other hand, in 4' and 5', two adjacent bulky phenyl groups require opposite orientations, thus allowing heterochiral aggregation. Enantioselective aggregation with homochirality or heterochirality can thus be controlled with suitable substituents. While its mononuclear precursor 6 is pentacoordinated with the N(5) donor set of the pentadentate ligand H(2)L(6), the deprotonated complex 6' has an imidazolate-bridged tetranuclear cyclic structure with a Cu-Cu distance of 6.086(2) Å. The ligand in 6' is tetradentate and includes an hexahydropyrimidine ring resulting from a deprotonation induced rearrangement reaction.

Journal Article↗
PubMed2000

A rational design for imidazolate-bridged linear trinuclear compounds from mononuclear copper(II) complexes with 2-[((imidazol-2-ylmethylidene)amino)ethyl]pyridine (HL): syntheses, structures, and magnetic properties of [Cu(L)(hfac)M(hfac)2Cu(hfac)(L)] (M = ZnII, CuII, MnII).

Two mononuclear copper(II) complexes with the unsymmetrical tridentate ligand 2-[((imidazol-2-ylmethylidene)amino)ethyl]pyridine (HL), [Cu(HL)(H2O)](ClO4)2.2H2O (1) and [Cu(HL)Cl2] (2), have been prepared and characterized. The X-ray analysis of 2 revealed that the copper(II) ion assumes a pentacoordinated square pyramidal geometry with an N3Cl2 donor set. When 1 and 2 are treated with an equimolecular amount of potassium hydroxide, the deprotonation of the imidazole moiety promotes a self-assembled process, by coordination of the imidazolate nitrogen atom to a Cu(II) center of an adjacent unit, leading to the polynuclear complexes [[Cu(L)(H2O)](ClO4)]n (3) and [[Cu(L)Cl].2H2O]n (4). Variable-temperature magnetic data are well reproduced for one-dimensional infinite regular chain systems with J = -60.3 cm(-1) and g = 2.02 for 3 and J = -69.5 cm(-1) and g = 2.06, for 4. When 1 is used as a "ligand complex" for [M(hfac)2] (M = Cu(II), Ni(II), Mn(II), Zn(II)) in a basic medium, only the imidazolate-bridged trinuclear complexes [Cu(L)(hfac)M(hfac)2Cu(hfac)(L)] (M = Zn(II), Cu(II)) (5, 6) can be isolated. Nevertheless, the analogous complex containing Mn(II) as the central metal (7) can be prepared from the precursor [Cu(HL)Cl2] (2). All the trinuclear complexes are isostructural. The structures of 5 and 6 have been solved by X-ray crystallographic methods and consist of well-isolated molecules with Ci symmetry, the center of symmetry being located at the central metal. Thus, the copper(II) fragments are in trans positions, leading to a linear conformation. The magnetic susceptibility data (2-300 K), which reveal the occurrence of antiferromagnetic interactions between copper(II) ions and the central metal, were quantitatively analyzed for symmetrical three-spin systems to give the coupling parameters JCuCu = -37.2 and JCuMn = -3.7 cm(-1) with D = +/-0.4 cm(-1) for 6 and 7, respectively. These magnetic behaviors are compared with those for analogous systems and discussed on the basis of a localized-orbital model of exchange interactions.

Chemical Phenomena↗
PubMed2001

Supramolecular staircase via self-assembly of disklike molecules at the solid-liquid interface.

A series of soluble hexabenzocoronene (HBC) derivatives with pendant optically active (S)-3,7-dimethyloctanyl and (R,S)-3,7-dimethyloctanyl (mixture of stereoisomers) hydrocarbon side chains with and without a phenylene spacer were assembled into differently ordered arrays at the interface between a solution and the basal plane of highly oriented pyrolytic graphite (HOPG). Molecularly resolved scanning tunneling microscopy (STM) images revealed that all derivatives self-assemble into oriented crystals in quasi-two dimensions. However, while for the alkyl-substituted HBCs (1,4) all of the single aromatic cores within a monolayer exhibit the same contrast in the STM, the single aromatic cores with a phenylene group between the alkyl side chains and the aromatic core (2a,2b,3) exhibit different contrasts within a monolayer. For the disks carrying racemic branched or n-alkyl side chains (2b,3) a random distribution of the two different contrasts within the 2D-crystal is observed, while the optically active phenylene-alkyl-substituted HBC (2a) exhibits a periodical distribution of three contrasts within the monolayer. We attribute the different contrasts of the aromatic cores in the presence of the phenylene groups to a loss of the planarity of the whole molecule and different conformations, which allow the conjugated disks to attain different equilibrium positions above the surface of HOPG. In the case of the optically active side chains a regular superstructure with three distinctly different positions such as in a staircase is attained. The self-assembly processes are governed by the interplay of intramolecular as well as intermolecular and interfacial interactions. In the present case, the interactions may induce both the molecules to acquire well distinct positions along the z axis and to adopt different conformations. The reported results open new avenues of exploration. For instance, the different couplings of conjugated molecules with the substrate at different separations can be investigated by means of scanning tunneling spectroscopy (STS). Furthermore, experiments on the STM tip-induced switching of single molecules embedded in a monolayer appear feasible.

Journal Article↗
PubMed2002

Designed self-assembly of molecular necklaces.

This paper reports an efficient strategy to synthesize molecular necklaces, in which a number of small rings are threaded onto a large ring, utilizing the principles of self-assembly and coordination chemistry. Our strategy involves (1) threading a molecular "bead" with a short "string" to make a pseudorotaxane and then (2) linking the pseudorotaxanes with a metal complex with two cis labile ligands acting as an "angle connector" to form a cyclic product (molecular necklace). A 4- or 3-pyridylmethyl group is attached to each end of 1,4-diaminobutane or 1,5-diaminopentane to produce the short "strings" (C4N4(2+), C4N3(2+), C5N4(2+), and C5N3(2+)), which then react with a cucurbituril (CB) "bead" to form stable pseudorotaxanes (PR44(2+), PR43(2+), PR54(2+), and PR53(2+), respectively). The reaction of the pseudorotaxanes with Pt(en)(NO(3))(2) (en = ethylenediamine) produces a molecular necklace [4]MN, in which three molecular "beads" are threaded on a triangular framework, and/or a molecular necklace [5]MN, in which four molecular "beads" are threaded on a square framework. Under refluxing conditions, the reaction with PR44(2+) or PR54(2+) yields exclusively [4]MN (MN44T or MN54T, respectively), whereas that with PR43(2+) or PR53(2+) produces exclusively [5]MN (MN43S or MN53S, respectively). The products have been characterized by various methods including X-ray crystallography. At lower temperatures, on the other hand, the reaction with PR44(2+) or PR54(2+) affords both [4]MN and [5]MN. The supermolecules reported here are the first series of molecular necklaces obtained as thermodynamic products. The overall structures of the molecular necklaces are strongly influenced by the structures of pseudorotaxane building blocks, which is discussed in detail on the basis of the X-ray crystal structures. The temperature dependence of the product distribution observed in this self-assembly process is also discussed.

Journal Article↗
PubMed2002

Nonactin biosynthesis: the initial committed step is the condensation of acetate (malonate) and succinate.

Nonactin is a macrotetrolide antibiotic produced by Streptomyces griseus subsp. griseus ETH A7796 that has shown activity against the P170-glycoprotein efflux pump associated with multiple drug resistant cancer cells. Nonactin is a polyketide, albeit a highly atypical one. The structure is composed of two units of each of the enantiomers of nonactic acid, arranged in a macrocycle, so that the molecule has S4 symmetry and is achiral. The monomer units, (+)- and (-)-nonactic acid, are derived from acetate, succinate, and propionate, although the exact details of the assembly process are quite unclear. We have used feeding experiments with a series of multiple stable isotope labeled precursors to elucidate the details of the first committed step of nonactic acid biosynthesis. We have found that the (13)C label from 3-ketoadipate is incorporated specifically into both nonactic acid and its homologue, homononactic acid. The data conclusively show that the first committed step of nonactin biosynthesis is the coupling of a succinate derivative with either acetate or malonate. The differentiation into either nonactate or homononactate occurs after the initial condensation; the homologues are not derived from use of a different "starter unit" by the nonactate polyketide synthase. The first step of nonactin biosynthesis involves achiral intermediates; differentiation between the known enantiocomplementary biosynthesis pathways to form each enantiomer of the precursor monomer units likely occurs after the initial condensation reaction.

Anti-Bacterial Agents↗
PubMed2002

Substrate-facilitated assembly of elastin-like peptides: studies by variable-temperature in situ atomic force microscopy.

Extended duration in situ variable-temperature atomic force microscopy performed on a series of coacervating hydrophobic peptides based on human elastin revealed a novel multistage surface assembly process. Formation of epitaxially arranged peptide rods was preceded by rapid expansion of a two-dimensional film on the nucleating substrate, a process facilitated by specific hydrophobic peptide-substrate and intrapeptide interactions.

Base Sequence↗
PubMed2003

Supramolecular assembly of dendritic polymers elucidated by 1H and 13C solid-state MAS NMR spectroscopy.

Advanced solid-state NMR methods under fast magic-angle spinning (MAS) are used to study the structure and dynamics of large supramolecular systems, which consist of a polymer backbone with dendritic side groups and self-assemble into a columnar structure. The NMR experiments are performed on as-synthesized samples, i.e., no isotopic enrichment is required. The analysis of (1)H NMR chemical-shift effects as well as dipolar (1)H-(1)H or (1)H-(13)C couplings provide site-specific insight into the local structure and the segmental dynamics, in particular, of phenyl rings and -CH(2)O- linking units within the dendrons. Relative changes of (1)H chemical shifts (of up to -3 ppm) serve as distance constraints and allow protons to be positioned relative to aromatic rings. Together with dipolar spinning sideband patterns, pi-pi packing phenomena and local order parameters (showing variations between 30% and 100%) are selectively and precisely determined, enabling the identification of the dendron cores as the structure-directing moieties within the supramolecular architecture. The study is carried out over a representative selection of systems which reflect characteristic differences, such as different polymer backbones, sizes of dendritic side groups, or length and flexibility of linking units. While the polymer backbone is found to have virtually no effect on the overall structure and properties, the systems are sensitively affected by changing the generation or the linkage of the dendrons. The results help to understand the self-assembly process of dendritic moieties and aid the chemical design of self-organizing molecular structures.

Journal Article↗
PubMed2003

Mesoporous polyhedral cages and shells formed by textured self-assembly of ZnO nanocrystals.

We report a new structure, mesoporous structured polyhedral drum and spherical cages and shells formed by textured self-assembly of ZnO nanocrystals, which are made by a novel self-assembly process during epitaxial surface oxidation. The cages/shells exhibit unique geometrical shapes, and their walls are composed of mesoporous and textured ZnO nanocrystals. The structures of the cages and shells are studied, and a growth mechanism is proposed to be a process following solidification of the Zn liquid droplets, surface oxidation, and sublimation.

Journal Article↗
PubMed2003

Adsorbed surfactants as templates for the synthesis of morphologically controlled polyaniline and polypyrrole nanostructures on flat surfaces: from spheres to wires to flat films.

Nanostructures of polyaniline (PAni) and polypyrrole (PPy) with controlled morphologies have been synthesized on atomically flat surfaces using adsorbed surfactant molecules as templates. Atomic force microscopy (AFM) has been used to investigate polymer film formation on highly oriented pyrolytic graphite (HOPG) and chemically modified HOPG. Morphological control over the resulting polymer film is possible by the addition of coadsorbing molecules, manipulation of the length of the surfactant hydrophobe, or by changing the surface chemistry of the adsorbing substrate. Phase transitions between spheres, cylinders/wires, and featureless films have been observed which exactly parallel transitions between spheres, cylinders, and flat layers in the adsorbed surfactant. Parallel arrays of PAni nanowires can be synthesized with alignment evident over large areas in a simple self-assembly technique in which fabrication and arrangement take place simultaneously. Such a technique in which one can engineer sub-100-nm-ordered nanoscale pi-conjugated polymer structures of a desired shape by a simple self-assembly process presents potential as templates, sensors, and microelectronic devices.

Journal Article↗
PubMed2003

Self-assembly of monodispersed, chiral nanoclusters of cysteine on the Au(110)-(1 x 2) surface.

The self-assembly of monodispersed supramolecular nanoclusters was observed by scanning tunneling microscopy (STM). The clusters form from the naturally occurring amino acid cysteine by vapor deposition onto the Au(110)-(1 x 2) surface under ultrahigh vacuum conditions. Enantiomerically pure l- and d-cysteine yields clusters with mirror-image STM signatures. Racemic ld-cysteine segregates into homochiral clusters, evidencing specific intermolecular interactions during the self-assembly process.

Cysteine↗
PubMed2004

Cavitand-based nanoscale coordination cages.

This communication reports design, self-assembly, solution, and solid-state characterization of nanoscale coordination cages formed by tetradentate cavitand ligands and appropriate metal precursors. The preorganization of the cavitand ligand in terms of structural rigidity and relative orientation of the pyridyl units leads to the exclusive formation of coordination cages in a wide temperature and concentration range. Desired features of the cage self-assembly process, such as reversibility in the presence of a competitive ligand and self-recognition of the cavitand components, have been assessed.

Journal Article↗
PubMed2005

Localized surface plasmon resonance sensing of lipid-membrane-mediated biorecognition events.

Supported phospholipid bilayers (SPBs) have emerged as important model systems for studies of the natural cell membrane and its components, which are essential for the integrity and function of cells in all living organisms, and also constitute common targets for therapeutic drugs and in disease diagnosis. However, the preferential occurrence of spontaneous SPB formation on silicon-based substrates, but not on bare noble-metal surfaces, has so far excluded the use of the localized surface plasmon resonance (LSPR) sensing principle for studies of lipid-membrane-mediated biorecognition reactions. This is because the LSPR phenomenon is associated with, and strongly confined to, the interfacial region of nanometric noble-metal particles. This problem has been overcome in this study by a self-assembly process utilizing localized rupture of phospholipid vesicles on silicon dioxide in the bottom of nanometric holes in a thin gold film. The hole-induced localization of the LSPR field to the voids of the holes is demonstrated to provide an extension of the LSPR sensing concept to studies of reactions confined exclusively to SPB-patches supported on SiO2. In particular, we emphasize the possibility of performing label-free studies of lipid-membrane-mediated reaction kinetics, including the compatibility of the assay with array-based reading (approximately 7 x 7 microm2) and detection of signals originating from bound protein in the zeptomole regime.

Adsorption↗
PubMed2004

pH-triggered assembly of organometallic receptors for lithium ions.

The reaction of half-sandwich complexes of ruthenium, rhodium, and iridium with amino-substituted 3-hydroxy-2-pyridone ligands in aqueous solution gives monomeric O,O'-chelate complexes. Upon addition of base, the complexes assemble to form trimeric metallamacrocycles, as evidenced by NMR spectroscopy and single-crystal X-ray analyses. The macrocycles are able to act as highly selective receptors for lithium ions. The binding constants depend on the nature of the half-sandwich complex, the ligand, and the pH. With a commercially available (cymene)Ru complex, a receptor with a Li+ binding constant of K(a) = 5.8 (+/-1.0) x 10(4) M(-1) and a Li+-Na+ selectivity of 10 000:1 can be obtained. The fact that the assembly process of the receptor is pH-dependent can be used to detect the presence of lithium ions by a pH measurement. Furthermore, it is possible to transduce the binding of Li+ into a change of color by means of a chemical reaction with FeCl(3). This allows the detection of Li+ in the pharmacologically relevant concentration range of 0.5-1.5 mM by the "naked eye".

Cations, Monovalent↗
PubMed2004

Anion-templated assembly of a [2]catenane.

The first example of a [2]catenane structure to be synthesized using anion templation is described. The nature of the anion template is demonstrated to be crucial to the assembly process, with only chloride anion producing the [2]catenane in acceptable yield. Anion binding studies reveal a dramatic catenation effect on anion selectivity properties as compared to a noncatenated acyclic receptor.

Journal Article↗
PubMed2004

Temperature-dependent behavior of a symmetric long-chain bolaamphiphile with phosphocholine headgroups in water: from hydrogel to nanoparticles.

The temperature-dependent self-assembly of the single-chain bolaamphiphile dotriacontan-1,1'-diyl-bis[2-(trimethylammonio)ethyl phosphate] (PC-C32-PC) was investigated by transmission electron microscopy (TEM), differential scanning calorimetry (DSC), Fourier transform infrared spectroscopy (FT-IR), X-ray scattering, rheological measurements, and dynamic light scattering (DLS). At room temperature this compound, in which two phosphocholine headgroups are connected by a C(32) alkyl chain, proved to be capable of gelling water very efficiently by forming a dense network of nanofibers (Kohler et al. Angew. Chem., Int. Ed. 2004, 43, 245). A specific feature of this self-assembly process is that it is not driven by hydrogen bonds but solely by hydrophobic interactions of the long alkyl chains. The nanofibers have a thickness of roughly the molecular length and show a helical superstructure. A model for the molecular structure of the fibrils which considers the extreme constitution of the bolaamphiphile is proposed. Upon heating the suspensions three different phase transitions can be detected. Above 49 degrees C, the temperature of the main transition where the alkyl chains become "fluid", a clear low-viscosity solution is obtained due to a breakdown of the fibrils into smaller aggregates. Through mechanical stress the gel structure can be destroyed as well, indicating a low stability of these fibers. The gel formation is reversible, but as a drastic rearrangement of the molecules takes place, metastable states occur.

Antifungal Agents↗