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Results for “spatial patterning”

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PubMed1989

Developmental and environmental regulation of a phenylalanine ammonia-lyase-beta-glucuronidase gene fusion in transgenic tobacco plants.

A 1.1-kilobase promoter fragment of the bean (Phaseolus vulgaris L.) phenylalanine ammonia-lyase (EC 4.3.1.5) gene PAL2 was translationally fused to the beta-glucuronidase reporter gene and transferred to tobacco by Agrobacterium tumefaciens-mediated leaf disk transformation. The distribution of beta-glucuronidase activity in these transgenic plants is very similar to that of endogenous PAL2 transcripts in bean, with very high levels in petals; marked accumulation in anthers, stigmas, roots, and shoots; and low levels in sepals, ovaries, and leaves. Histochemical analysis of the spatial pattern of beta-glucuronidase activity showed that the PAL2 promoter is highly active in the shoot apical meristem, the zone of cell proliferation immediately adjacent to the root apical meristem, and in the early stages of vascular development at the inception of xylem differentiation. Wounding and light evoke specific changes in the spatial pattern of beta-glucuronidase activity in stems, including induction in the epidermis. These data indicate that the PAL2 promoter transduces a complex set of developmental and environmental cues into an integrated spatial and temporal program of gene expression to regulate the synthesis of a diverse array of phenylpropanoid natural products.

Ammonia-Lyases↗
PubMedDate not supplied

Effects of stimulus content and brain lateralization on the habituation of the electrodermal orienting reaction (OR).

Slides with either a six-letter word or a complex spatial pattern were repeatedly flashed either to the left or to the right of a center fixation point (i.e. visual half-field technique) in an electrodermal orienting paradigm. Skin conductance (SC) was recorded from both the left and right hand. Half of the subjects had the slides projected 6.0 degrees of visual angle lateral to fixation, the other half had the stimuli projected 2.5 degrees lateral to fixation. There were 15 presentations of each stimulus with a mean inter-trial interval (ITI) of 30 sec. Results showed significantly larger mean SCR-amplitudes across trials to the verbal stimuli compared to the spatial patterns when presented in the right visual half-field, and larger amplitudes to the spatial stimuli when presented in the left half-field. However, this was only true for the 6.0 degrees condition, but not for the 2.5 degrees condition. No differences were found between left and right hand recording. The present data imply a functional relationship between electrodermal orienting habituation and hemispheric asymmetry.

Adult↗
PubMedDate not supplied

Evaluating UV-B effects and EDU protection in soybean leaves using fluorescence.

A growth-chamber experiment was conducted to evaluate whether ethylenenediurea (EDU), a chemical shown to be protective against ozone pollution, could ameliorate foliar damage induced by ultraviolet-B (UV-B) radiation exposure in 'Roanoke' soybean (Glycine max L.), a UV-B-sensitive cultivar, and whether these effects could be discriminated using fluorescence (F) observations. The experiment had four treatment groups: control; biologically effective UV-B (18 kJ m(-2) day(-1)); EDU (500 micromol mol(-1)); and both UV-B and EDU (UV/EDU). Measurements included photosynthetic pigments, F image system (FIS) images of adaxial surfaces in four spectral regions (blue, green, red and far-red) and F emission spectra of the pigment extracts produced at two excitation wavelengths, 280 nm (280EX) and 380 nm (380EX). Several F ratios from 280EX, 380EX and the FIS images successfully separated the low UV vs high EDU group responses based on means alone, with intermediate values for controls and the combined UV/EDU groups. A UV-B/blue emission ratio, F315/F420 (280EX), was correlated with chlorophyll content (microg cm(-2))(R = 0.88, P < 0.001), as was a ratio of emissions at two UV-A wavelengths: F330/F385 (280EX) (R = 0.87). These two 280EX ratios were also linearly correlated with emission ratios produced by 380EX, such as the far-red/green ratio, F730/F525 (380EX) (R = 0.92, P < 0.001), and clearly distinguished the UV-B and EDU groups separately, and which bracketed the similar intermediate responses of the UV/EDU and control groups. The FIS images additionally captured the following anatomical spatial patterns across the leaf surfaces: (1) emissions of UV-B-irradiated leaves were more uniform but lower in intensity than those of other groups; and (2) emissions of EDU-treated leaves exhibited the greatest variation in spatial patterns because veins had elevated blue F and leaf edges had enhanced red and far-red F. This experiment supports the hypothesis that EDU substantially ameliorated UV-B damage to foliage, a result that relied on the combined use of FIS images and emission spectra.

Phenylurea Compounds↗
PubMed1993

Visual and statistical assessment of spatial clustering in mapped data.

Maps have seen increasing use to examine regional variation in health, but there has been little research on the visual perception of spatial patterns in mapped data. Theories of graphical perception suggest that the interpretation of maps is complex relative to other types of graphical material. This paper describes an experiment in which observers assessed a series of maps with respect to their amount of clustering. Maps with various types of spatial pattern were visually distinguishable; comparisons between variants of the same map, however, using different shading and plotting symbols indicated that the method of data representation also had a strong effect on visual perception. There was some evidence for a learning effect in complex maps. The relationship between the visual assessments and a statistical measure of spatial autocorrelation was significant but imperfect.

Cluster Analysis↗
PubMed1988

Mathematical simulation of proton tracks in water vapor and their microdosimetric analysis.

The spatial pattern of primary physical events was calculated for protons in water vapor by means of a Monte Carlo program. Two different cross section data sets were used to cover the proton energy range from 0.2 to 15 MeV. From the spatial pattern of primary energy deposition, proximity functions were derived and from these the dose mean lineal energy yD was calculated. The contributions of different track components to yD for spherical target volumes of 1-100 nm were analysed. The results are compared with the LET approximation and with analytical calculations of yD based on expectation values of the radial energy deposition around the proton path (radial dose profiles). Finally the associated volume of proton tracks was calculated using the so called 'linear approximation', and energy deposition distributions were derived. These were compared with distributions calculated by means of restricted-LET.

Algorithms↗
PubMed1982

Coding of gustatory information in the pontine parabrachial nuclei of the rabbit: magnitude of neural response.

An electrophysiological analysis was carried out on 82 neurons in the parabrachial nuclei to study coding of gustatory stimuli. The magnitude of neural discharge evoked by two concentrations of each of 4 basic taste stimuli were subjected to two types of analyses to evaluate neuronal specificity and across-element spatial patterning in the coding of taste quality. Results were compared and contrasted to those in rodents. Profiles of taste response of individual neurons were analyzed mathematically by Q-technique principal components analysis and cluster analysis to identify basic neuronal patterns of response. Four distinct patterns emerged which, based on the average profiles of response, were characterized as: NaCl-dominant, NaCl-HCl, sucrose-dominant, and non-specific. Analysis of the NaCl- and sucrose-dominant types of neurons indicated that neurons with the most narrowly tuned patterns of response to the taste stimuli could not effectively code specific taste qualities. Comparison of interstimulus correlations in magnitude of response across neurons between qualitatively different tastants and intrastimulus correlations between intensities of given tastants also revealed difficulties with the spatial pattern model of coding. The discrepant findings raise questions about an assumption utilized in the analysis of the model, viz., that all elements contribute homogeneously to the patterning code.

Animals↗
PubMed2004

[Population structure and distribution pattern of rare plant communities in Houhe Nature Reserve].

An investigation on the size structure and spatial pattern of 26 major tree species with a diameter at breast height (DBH) > or = 5 cm was made on a 1 hm2 fixed plot in the mixed evergreen and deciduous broad-leaved forest in Houhe National Nature Reserve of Central China. The results showed that 7 populations of the 26 species, i.e., Dipteronia sinensi, Aesculus wilsonii, Pterostyrax psilophyllus, Davidia involucrate, Euptelea pleiosperma, Tetracentron sinense and Cercidiphyllum japonicum, were rare endangered, species, and two of the 7 populations, T. sinense and C. japonicum, were very limited in numbers. The population structure of P. psilophyllus was in declining, and that of the rest was in growing. The spatial distribution pattern of P. psilophyllus, A. wilsonii and T. sinense was in random, and that of the others was clumped. Among the other 19 non-rare populations, the population structure of P. wilsonii was in declining, that of D. lotus, A. palmatum, A. wilsonii, A. franchetii, M. cuneifolia and H. dulcis was stable, and the rest was in growing. The spatial distribution pattern of D. lotus and H. dulcis was in random, and that of the others was clumped. On the whole, the growing populations were dominant, amounting to 61.54%, and the stable and declining populations accounted for 6.92% and 11.54%, respectively. The results of the two judging methods were consistent, showing that the distribution pattern of clumping (80.77%) was dominant, while the random and even distribution patterns were infrequent.

Aesculus↗
PubMed2007

The interplay between a self-organized process and an environmental template: corpse clustering under the influence of air currents in ants.

Many spatial patterns observed in nature emerge from local processes and their interactions with the local environment. The clustering of objects by social insects represents such a pattern formation process that can be observed at both the individual and the collective level. In this paper, we study the interaction between air currents and clustering behaviour in order to address the coordinating mechanisms at the individual level that underlie the spatial pattern formation process in a heterogeneous environment. We choose the corpse clustering behaviour of the ant Messor sanctus as an experimental paradigm. In a specifically designed experimental set-up with a well-controlled laminar air flow (approx. 1 cm s-1), we first quantify the modulation of the individual corpse aggregation behaviour as a function of corpse density, air flow intensity and the ant's position with respect to corpse piles and air flow direction. We then explore by numerical simulation how the forming corpse piles modify the laminar air flow around them and link this result with the individual behaviour modulation. Finally, we demonstrate on the collective level that this laminar air flow leads to an elongation and a slow displacement of the formed corpse piles in the direction of the air current. Both the individual behaviour modulated by air flow and the air flow modulated by the forming corpse piles can explain the pile patterns observed on the collective level as a stigmergic process. We discuss the generality of this coordinating mechanism to explain the clustering phenomena in heterogeneous environments reported in the literature.

Animals↗
PubMed2006

Leg muscles differ in spatial activation patterns with differing levels of voluntary plantarflexion activity in humans.

BACKGROUND/AIMS: The purpose of this study was to investigate the differential activity between and within individual muscles commonly grouped as plantarflexors. Much of the previous information gathered on plantarflexor activity has been attained using electromyographic recordings. In this study, we used magnetic resonance imaging which allowed us to look at spatial differences in activation. METHODS: Twenty-two human subjects exercised under four different conditions - combinations of loads of 25 or 65% of maximum voluntary contraction (MVC) and the direction of plantarflexion at a sagittal and off-sagittal angle. Before and after each exercise condition, T2-weighted magnetic resonance images were collected. Regions of interest were drawn around the lateral gastrocnemius (LG), medial gastrocnemius (MG), soleus (SOL), peroneus longus (PER) and tibialis anterior (TA) muscles and analyzed for differences. RESULTS: Significant increases in T2 relaxation times during 25% MVC conditions were found for PER and, during the 65% MVC, for all four muscles considered plantarflexors (LG, MG, SOL, PER). No significant differences were found between sagittal and off-sagittal conditions. Within LG and MG, greater increases in T2 times with exercise were found in proximal regions compared with distal regions. CONCLUSION: These results are consistent with suggestions that individual members of muscle groups are capable of differential activity and that for at least some muscles, such differential activity may exist within subvolumes of individual muscles.

Adolescent↗
PubMed2000

[Stratification of a hyperendemic city in hemorrhagic dengue].

Any effort to control dengue hemorrhagic fever (DHF) faces a number of challenges. Among these are the great environmental heterogeneity of homes and neighborhoods in urban centers where the primary dengue vector, Aedes aegypti, breeds, as well as shortages of resources and of personnel trained in mosquito control. Adequate epidemiological surveillance could serve as a basis to begin to stratify urban communities and identify the areas in them where control efforts should be focused. In this study we stratified Maracay, Venezuela, a city with hyperendemic dengue hemorrhagic fever, using a geographic information system and analyzing the persistence, incidence, and prevalence of dengue, by means of clinical diagnoses reported from 1993 through 1998. Maracay has around one million inhabitants living in some 349 neighborhoods in the six communities that make up the greater Maracay metropolitan area. During that 1993-1998 period the Maracay area reported 10,576 cases of dengue, 2,593 cases of DHF, and 8 deaths. The incidence of DHF was related to the incidence of dengue, the number of inhabitants in an area, and population density. The spatial pattern of dengue incidence was stable over the years that were studied, and significant, positive relationships were found between pairs of years and the incidence of dengue by neighborhood. The persistence of dengue was related directly to monthly incidence by neighborhood. These spatial patterns helped to divide the city into three strata: 68 neighborhoods without apparent dengue, 226 neighborhoods with low persistence and prevalence, and 55 neighborhoods with high persistence and prevalence. We recommend giving the highest priority for control efforts to these 55 neighborhoods, which make up just 35% of the Maracay urban area but had 70% of all the reported dengue cases.

Aedes↗
PubMedDate not supplied

Regional patterns of birthweights in Papua New Guinea in relation to diet, environment and socio-economic factors.

Regional differences in mean birthweight in rural Papua New Guinea (PNG) and the importance of differences in family diet and maternal education and socio-economic status on such patterns were explored using birthweight data collected by the 1982/83 PNG National Nutrition Survey. A total of 6137 birthweight measurements from 85 PNG districts were available, representing 22% of all children included in the survey. The nature of possible selection biases are assessed and their implications discussed. Hierarchical Bayesian spatial models based on conditional autoregressive (CAR) priors were used to model spatial patterns in birthweights and their relation to different sets of covariates. Birthweights were found to exhibit striking geographical differences. Children from the central PNG highlands and from affluent lowland areas had the highest birthweights, while they were lowest in the (largely lowland) Sepik, Western, Madang and Milne Bay Provinces and in remote highland fringe areas. Maternal education, socio-economic status and diet were all important predictors, but only differences in family diet were correlated with the observed spatial patterns. The results of the present study highlight the importance of nutrition and socio-economic status in explaining differences in birthweights in PNG. Besides improving maternal health, interventions for improving birthweights in PNG should therefore aim at strengthening the economic base of rural populations and promote the cultivation and consumption of high quality foods.

Birth Weight↗
PubMed1999

Pathogenic mechanisms in ischemic damage: a computational study.

The pathogenesis of penumbral tissue infarction during acute ischemic stroke is controversial. This peri-infarct tissue may subsequently die, or survive and recuperate, and its preservation has been a prime goal of recent therapeutic trials in acute stroke. Two major hypotheses currently under consideration are that penumbral tissue is recruited into an infarct by cortical spreading depression (CSD) waves, or by a non-wave self-propagating process such as glutamate excitotoxicity (GE). Careful experimental attempts to discriminate between these two hypotheses have so far been quite ambiguous. Using a computational metabolic model of acute focal stroke we show here that the spatial patterns of tissue damage arising from artificially induced foci of infarction having specific geometric shapes are inherently different. This is due to the distinct propagation characteristics underlying self-regenerating waves and non-wave diffusional processes. The experimental testing of these predicted spatial patterns of damage may help determine the relative contributions of the two pathological mechanisms hypothesized for ischemic tissue damage.

Acute Disease↗
PubMed1986

Differentiation, cell sorting and proportion regulation in the slug stage of Dictyostelium discoideum.

Recent experimental work suggests that under normal conditions cell sorting plays an important part in maintaining and re-establishing the axial pattern of cell types in the slug stage of the cellular slime mold Dictyostelium discoideum. Following removal of the anterior zone of the slug, anterior-like cells that are normally distributed throughout the posterior of the slug rapidly migrate to the anterior end of the transected slug, and new anterior-like cells appear in the posterior portion. These results provide evidence that the direct linkage between spatial location and differentiation hypothesized in positional information models of spatial pattern formation is not universal. In this paper we develop and analyze a class of mathematical models of the slug in which cell determination can be less rigidly tied to spatial location, and which involve chemotactic cell sorting to re-establish and maintain the spatial pattern of cell types. We show that these models can reproduce the qualitative aspects of the experimental observations and that sorting takes place on the observed time scale when reasonable values of the parameters are used.

Cell Differentiation↗
PubMed2006

From biochemistry to morphogenesis in myxobacteria.

Many aspects of metazoan morphogenesis find parallels in the communal behavior of microorganisms. The cellular slime mold D. discoideum has long provided a metaphor for multicellular embryogenesis. However, the spatial patterns in D.d. colonies are generated by an intercellular communication system based on diffusible morphogens, whereas the interactions between embryonic cells are more often mediated by direct cell contact. For this reason, the myxobacteria have emerged as a contending system in which to study spatial pattern formation, for their colony strutures rival those of D.d. in complexity, yet communication between cells in a colony is carried out by direct cell contacts. Here I sketch some of the progress my laboratory has made in modeling the life cycle of these organisms.

Animals↗
PubMed1996

Biphasic Temporal and Spatial Induction Patterns of Defense-Related mRNAs and Proteins in Fungus-Infected Parsley Leaves.

Previous experiments using in situ RNA hybridization have shown that the mRNAs encoding phenylalanine ammonia-lyase, 4-coumarate:coenzyme A ligase, and pathogenesis-related protein 1 accumulated transiently around fungal infection sites in parsley (Petroselinum crispum) leaf buds. These studies have now been extended by (a) analyzing different stages of the infection process and (b) monitoring the timing of appearance and the spatial distribution of the proteins as well as the corresponding mRNAs. An early and short period of mRNA induction throughout a large portion of the infected leaf was followed by a longer period, during which the mRNA levels remained high in a more localized area around the site of fungal penetration with sharp borders toward the surrounding tissue. This biphasic pattern of mRNA accumulation was followed after some delay by the same pattern of protein accumulation.

Journal Article↗
PubMedDate not supplied

Visual discrimination of target displacement remains after damage to the striate cortex in humans.

Damage to the striate cortex usually causes blindness in those regions of the visual field which map to the area of neural damage. Nonetheless, there are reports that some patients with such damage can localize and perform certain visual discriminations between light stimuli presented within the 'blind' area of the visual field. Experiments on animals with different brain areas ablated suggest that visual function is served by two principal projection pathways from the retina. That to the striate cortex is primarily responsible for fine discrimination between stimulus parameters such as colour and spatial pattern, whereas that to the superior colliculus in the midbrain is responsible for visual localization of stimuli. The residual visual functions in patients with cortical damage are usually attributed to the non-striate retinal projection to the superior colliculus. We now present measurements of spatial discrimination in two observers with large visual field defects (scotomata) caused by damage to the striate cortical region. Both exhibit a near normal ability to discriminate displacements of targets when two lights are flashed sequentially in their defective visual field, but they are unable to discriminate spatial pattern or size. We argue that these results are consistent with the 'two visual systems' interpretation of ablation studies on non-human species.

Adult↗
PubMed1998

Correlation between apoptosis distribution and BMP-2 and BMP-4 expression in vestigial tooth primordia in mice.

The eutherian dental formula consists of three incisors, one canine, four premolars and three molars in each dental quadrant. Muroid evolution led to a reduction in the number of teeth, with one incisor separated from three molars by a long diastema. However, seven vestigial tooth primordia (D1-5, R1-2) have been detected in the embryonic diastemal area of the mouse maxilla between embryonic days (ED) 12.5 and 13.5. Computer-aided 3D reconstructions were used to analyse the temporo-spatial pattern of apoptosis during regression in the two largest and most distal vestiges (R1, R2). These structures have been widely considered as the primordium of the first upper molar and, accordingly, related molecular data have been interpreted exclusively in terms of progressive molar development. The spatial distribution of epithelial apoptosis, which affected the R1 and R2 rudiments in two consecutive waves on ED 12.5 and 13.5, respectively, was compared with our earlier data on expression of genes encoding bone morphogenetic proteins (BMP-2 and BMP-4). Similar temporo-spatial patterns of apoptosis and expression of BMP, specifically confined to the epithelium of the rudimentary tooth primordia, strongly support involvement of BMPs in the regulation of epithelial apoptosis during odontogenesis.

Animals↗
PubMed2006

A spatially explicit resource-based approach for managing stream fishes in riverscapes.

The article describes a riverscape approach based on landscape ecology concepts, which aims at studying the multiscale relationships between the spatial pattern of stream fish habitat patches and processes depending on fish movements. A review of the literature shows that few operational methods are available to study this relationship due to multiple methodological and practical challenges inherent to underwater environments. We illustrated the approach with literature data on a cyprinid species (Barbus barbus) and an actual riverscape of the Seine River, France. We represented the underwater environment of fishes for different discharges using two-dimensional geographic information system-based maps of the resource habitat patches, defined according to activities (feeding, resting, and spawning). To quantify spatial patterns at nested levels (resource habitat patch, daily activities area, subpopulation area), we calculated their composition, configuration, complementation, and connectivity with multiple spatial analysis methods: patch metrics, moving-window analysis, and least cost modeling. The proximity index allowed us to evaluate habitat patches of relatively great value, depending on their spatial context, which contributes to the setting of preservation policies. The methods presented to delimit potential daily activities areas and subpopulation areas showed the potential gaps in the biological connectivity of the reach. These methods provided some space for action in restoration schemes.

Animals↗