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Further evidence for the existence of PCDD/Fs in the environment prior to 1900.

PCDD/Fs and PCBs have been analyzed in a series of archived soil samples collected from various depths during the 1800s and early 1900s. PCBs were not found in soil samples collected before 1900, whereas PCDD/Fs were present in concentrations between 43 and 110 pg/g in surface soils, and between 9 and 150 pg/g in soils collected from below the surface. The PCDD/F homologue patterns of all surface soils were consistent with each other. The homologue pattern of deeper soils altered with depth to one that was dominated by highly chlorinated PCDDs. The highest sigma(4-8)PCDD/F concentration (150 pg/g) was found in the deepest soil analyzed (230-250 cm below the surface). The cork from one of the storage bottles contained considerable quantities of both PCBs and PCDD/Fs. However, contamination of the soils, either by diffusion through the cork or by cork particles, was discounted on the basis that no PCBs were evident in the soil, and that the PCDD/F homologue pattern in the cork was very different to that found in the soil. Similar arguments were used to discount contamination of the soil by dust. A sample of ashed vegetation from the archive, that had no cork stopper, contained high concentrations of PCBs (78 ng/g), concentrations of mono- to tri-CDFs that were higher than in any of the soils (190 pg/g), but very low concentrations of sigma(4-8)PCDD/F (12 pg/g). This pattern of analytes was considered to be representative of contamination from store room air and was completely different from the pattern observed in the soils. Taken together these observations indicate that contamination during storage, or subsequent handling, is unlikely to have occurred in archived soil samples that were stored with cork and wax seal intact. The results imply surface soil sigma(4-8)PCDD/F concentrations of around 60 pg/g at Rothamsted (southeast England) in the late 1800s, compared with approximately 300 pg/g reported for rural UK soils in the 1990s.

Benzofurans↗

Presence of monohydroxy bile acids in the urinary precipitates: a pitfall in the analysis of urinary bile acids.

The importance of the method of handling the urinary precipitates frequently present in urine samples, especially after freezing-thawing, for bile acid analysis is emphasized because of the presence of a considerable proportion of monohydroxy bile acids such as lithocholic and 3 beta-hydroxy-5-cholenoic acids. Filtration of the urinary precipitates may lead to the underestimation of these important bile acid species.

Bile Acids and Salts↗

Protocols for surveys, sampling, post-collection handling, and analysis of grain samples involved in mycotoxin problems.

This report examines and summarizes current knowledge regarding mycotoxin surveys, sampling techniques, conditions conducive to post-collection production of mycotoxins in grain samples, and analytical methods for mycotoxin analysis. Priority attention is given to samples of corn suspected of containing aflatoxin. The report includes recommendations where deems appropriate by the Ad Hoc Work Group.

Aflatoxins↗

The effect of sampling time and sample handling on the detection of Staphylococcus aureus in milk from quarters with subclinical mastitis.

Staphylococcus aureus mastitis is an important cause of economic loss for the dairy industry. Control programs rely on the timely and accurate identification of positive quarters. The effects of sampling time and sample handling were examined in an attempt to improve the accuracy of detection of S. aureus. Premilking and postmilking milk samples were collected from 55 lactating quarters with subclinical S. aureus infection. Each sample was divided into 2 aliquots; one of which was cultured fresh, the other was frozen at -20 degrees C for 14 days before being cultured. Analysis of variance was used to determine the effect of sampling time (premilking vs postmilking) and sample handling (fresh vs frozen) on the detection of S. aureus, as measured by the mean category for colony-forming units per millilitre (cfu/mL). A stratified analysis was required, due to interaction between sampling time and sample handling. Only a fresh postmilking sample was inferior, yielding a lower mean category for cfu/mL (P < 0.05). The ability to detect S. aureus in quarters with subclinical intramammary infection, as measured by the mean category of cfu/mL, was maximized in fresh or frozen premilking samples and in frozen postmilking samples.

Animals↗

HER2 analysis in breast cancer: reduced immunoreactivity in FISH non-informative cancer biopsies.

Due to the central role in predicting response to herceptin and possibly also other anticancer drugs, accurate and reproducible detection of the HER2 status is important. Fluorescence in situ hybridization (FISH) and immunohistochemistry (IHC) are the most commonly used methods for HER2 analysis. It is a disadvantage of FISH that a fraction of cases remain not interpretable probably due to suboptimal tissue handling before analysis. To investigate a possible influence of tissue damage on the results of HER2 IHC we compared the HER2 IHC results obtained in tumors with and without interpretable FISH in a breast cancer tissue microarray. The HER2 IHC results differed greatly between 1551 tumors with interpretable HER2 FISH signals and 405 breast cancers showing no FISH signals. FISH informative tumors had an IHC score of 3+ in 12.6%, 2+ in 3% and 1+ in 9.2% of cases. FISH non-informative tumors showed significantly lower IHC scores (p < 0.0001). They were IHC 3+ in 3.9%, 2+ in 3.7% and 1+ in 4.4% of cases. Overall, the data show that not only FISH but also IHC results are dependent on good tissue quality for successful analysis. Poor tissue quality can be easily identified in FISH analyses because of a lack of hybridization signals. Inappropriate tissue handling is more dangerous in IHC because an artificial lack of staining can be regarded as 'negative' result.

Adult↗

Ethical aspects to be considered in brain banking.

A brain bank is a prospective source of adequately collected and preserved tissues of the central nervous system obtained via a donor program, which are supplied for neurobiological research. Brain tissue banks collect brains, serum and cerebro-spinal fluid from patients suffering from neurological disorders such as Alzheimer's diseases, Parkinson's disease and multiple sclerosis for diagnostic purposes and for the development of future diagnostic tests. To create and develop the right infrastructure underlying brain bank activities, one should have a medico-legal and ethical support according to local legislation. From an ethical point of view, brain bank activities can be divided into the following categories: a) factors related to the donor program; b) factors related to handling and management of organs; c) factors related to scientific research. The present paper deals with the above mentioned issues according to world-wide recognised ethical considerations and recommendations of several official statements, and specifies the objectives of the European Brain Bank Network (EBBN).

Adult↗

[The current method of handling of test samples and medical reimbursement for POCT in Japan].

Point of care testing(POCT) is defined as clinical testing done at or near the site of patient treatment and care in the medical field, and includes all clinical test other than those performed at hospital laboratories and outside testing centers. Home testing is also a form of POCT relating to residential medical care. The ratio of clinical tests based on POCT has not tended to increase as rapidly in Japan, although such tests are greatly increasing in the US while clinical tests performed at hospital laboratories are decreasing. POCT products are generally applied to direct analysis of test samples obtained from patients. Since storage, transportation or pretreatment after sampling is not necessary in POCT, test data can be obtained in real time. Therefore, it is important to complete testing immediately after obtaining samples without transporting or storing them, when handling POCT samples. Consideration of POCT as a part of health care services covered by health insurance is the same as in the case of conventional testing. Recent technological innovation has provided a wide variety of POCT products that do not require medical equipment or reagents. Further development of novel, innovative POCT procedures in the near future is promising.

Autoanalysis↗

Handling and pathology reporting of prostate biopsies.

Appropriate handling and processing of prostate needle biopsies is critical for an optimal examination by pathologists. Reporting by pathologists should be accurate, unequivocal and concise, giving the information needed for the urologist. Quality parameters need to be developed to survey the performance of pathology laboratories.

Humans↗

Enumeration of cells in bone marrow and peripheral blood stem cell collections: technical issues and prospects for standardization.

Enumeration of total nucleated cells and mononuclear cells is a fundamental part of the laboratory evaluation and quality control program for bone marrow and peripheral blood stem cell collections intended for transplantation. Measurement of the total nucleated cell content is especially useful for providing rapid feedback about the bone marrow product during or immediately after the harvest. However, the mononuclear cell content may be more informative because the nucleated cell population contains a variable number of mature granulocytes and nucleated red cells, which do not contribute to hematopoietic engraftment. The lack of comparative data among various laboratories and among different types of cell counting methods has hindered standardization of these assays among bone marrow processing laboratories. Specific issues needing attention in assay standardization include sample preparation and handling, identification and elimination of artifacts in automated counting, relative advantages and disadvantages of manual and automated counting methods, and criteria for differential counting of nucleated cells. The establishment of standards for bone marrow and other stem cell counting methods, as well as other evaluation procedures, should be preceded by collection and analysis of comparative data, and followed by a proficiency testing program for bone marrow processing laboratories.

Artifacts↗

The effect of leupeptin on progestin receptors of human uterine tissues.

In preparation for studies of progestin receptor dynamics in human uterine tissues, we have investigated the effect of tissue handling and the protease inhibitor leupeptin on the molecular forms of progestin receptors in human endometrium, myometrium, and leiomyoma. Tritiated R5020 [17,21-dimethyl-19-nor-4,9-pregnadiene-3.20-dione) (promegestone)] was the labeled ligand, and sucrose density gradient ultracentrifugation was used to determine the sedimentation coefficients of the receptors. Scatchard plots of saturation analyses were used to determine the number of binding sites and dissociation constants. We found that rapid chilling of tissue at surgery was necessary to maintain specific progestin binding in myometrium, that leupeptin permitted demonstration of 8S receptors in myometrium and leiomyoma, and that 8S receptors were present in endometrium, with or without leupeptin. With careful handling of tissue and minimal homogenization, leupeptin may not be necessary to preserve 8S receptors in myometrium and leiomyoma cytosols; however, the use of leupeptin gives greater assurance that 8S receptors will be preserved. The number of binding sites varied from 0.6-2.0 pmol/mg cytosol protein, and the Kd values observed were between 1.7-6.9 X 10(-10) M.

Centrifugation, Density Gradient↗

Handling and culture of bovine embryos: survey of media used by 26 embryo transfer companies in the USA.

Embryo transfer has evolved from a few highly centralized clinics to a widespread number of clinics offering both clinic and on-the-farm services. Practitioners in the field have made very few changes in the handling and culture of embryos. A short review of general handling techniques, plus a survey of media used by 26 companies in the USA, is presented here. Currently, phosphate-bufferend saline (PBS) plus two other commercially available media (EMCARE and ViGro) are used by these companies. Fourteen different combinations of these products were reported and only 11 of the 26 consistently used the same medium for flushing, culture and freezing.

Animals↗

Breast tissue banking: collection, handling, storage, and release of tissue for breast cancer research.

A "tumor bank" provides a resource tool that can efficiently address the limitations of other tissue resources, such as clinical archives and research study collections. A tumor bank allows formal accreditation of ethics and security procedures, and through a dedicated management, processing, storage, retrieval, and release structure, can provide selected and preassembled material and data for research and discovery. This chapter describes the design, operating protocols, and methods for processing, storage, and release of the Manitoba Breast Tumor Bank.

Animals↗

MALDI-TOF-MS analysis of bacterial spores: wet heat-treatment as a new releasing technique for biomarkers and the influence of different experimental parameters and microbiological handling.

Short wet heat-treatment is presented as a new technique to release high-mass biomarkers to obtain strain-specific fingerprints of intact bacterial spores by matrix-assisted laser desorption/ionization-mass spectrometry (MALDI-MS). Wet heat-treatment was applied for several minutes (3-30) by two techniques using either a screw-cap tube submerged in a glycerol bath at 120 degrees C or an Eppendorff-tube submerged in a water bath at 100 degrees C. Both techniques turned out to be successful for releasing high-mass biomarkers. The influence of different experimental parameters and microbiological handling on the peak pattern of the released high-mass biomarkers was studied. While the sporulation medium, the applied washing procedure, and the choice of matrix crucially influenced the peak pattern, other parameters like storage conditions were found to be insignificant. A protocol of optimized experimental conditions for MALDI-MS of wet heat-treated spores is presented.

Bacillus↗

AIDS and related conditions--infection control. Guidelines for health care workers involved in patient management and investigation.

The aetiology, transmission, clinical spectrum, complicating opportunistic infections and neoplasias (such as Kaposi's sarcoma) and the diagnosis of acquired immune deficiency syndrome (AIDS) are described. Precautions to be observed by health care workers with regard to the handling of patients with AIDS and AIDS-related conditions are detailed, as are instructions relating to the handling of blood, secretions, excretions and tissues for laboratory and health care workers. These include the use of protective clothing and sterilization of instruments, and the correct disposal of infected fomites, needles, syringes and other disposable hardware. The need for counselling patients infected with the AIDS virus is stressed.

Acquired Immunodeficiency Syndrome↗

Measurement of apolipoprotein E (apoE) in cerebrospinal fluid.

Apolipoprotein E (apoE) is a protein involved in transport of lipids and has been implicated to play an important role in regeneration after nerve injury. Determination of apoE in cerebrospinal fluid (CSF) thus have a potential interest when studying different forms of brain damage and as a marker of ongoing regenerative processes in the brain. However, previous studies on CSF-ApoE in Alzheimer's disease (AD) have given inconclusive results. Such inconsistent results might be related to confounding factors interfering with sample handling and/or analyses, which have not been fully elucidated. We therefore examined different potential confounding factors for analyses of apoE in CSF and also developed a new enzyme linked immunosorbent assay (ELISA). The hydrophobic character of ApoE resulted in adsorption to different types of test tubes commonly used for collection of CSF at lumbar puncture, resulting in falsely low levels. This makes CSF handling critical, especially if samples are taken in different types of tubes, or is transferred to new tubes. Taking this confounding factors in consideration and analysing patient and control CSF handled in the same way and using the new ELISA, we could confirm our previous finding of reduced levels of ApoE in AD, (3.4 +/- 1.3 mg/l) compared with controls (4.5 +/- 2.7 mg/l) (p = 0.045). Both in the AD and in the control group, higher levels of CSF-ApoE was found in individuals possessing the ApoE4 alleles. Our results support that CSF-ApoE is reduced in AD, and that handling of CSF is a critical factor, which may explain the discrepant results from previous studies. Differences in the amount of patients and controls possessing the ApoE4 allele included might also increase the variance between different studies.

Aged↗

Measurement of oxygen and carbon dioxide partial pressures in synovial fluid after tonometry.

A commercially available gas analyser was used to measure tension of oxygen (PO2) and carbon dioxide (PCO2) in synovial fluid samples after tonometry. Measured values of PCO2 were close to the expected (median difference 0.2 kPa, range -0.4 to 0.4) within the analysed concentration range of 4-10 kPa. No consistent difference between measured and expected values of PO2 were found for oxygen in the range 3-11 kPa (median difference 0.1 kPa, range -0.3 to 1.2). For oxygen tensions below 3 kPa, however, the measured values invariably overestimated the actual PO2, the errors ranging from 0.3 to 1.9 kPa, median 1.1. The importance of proper handling of samples was investigated and storage for 1 h at 0 degrees C in plastic syringes resulted in elevation of the PO2 levels measured (range of elevation 0.2 to 3.6 kPa, median 1.15), whilst no significant differences were found when stored in glass syringes. Within the limits stated, commercially available gas analysers may thus be used to investigate these parameters related to local tissue metabolism in effusive joint conditions.

Carbon Dioxide↗

Monoamine concentrations in the human brain. A comparison between two methods of tissue handling.

The brains of five neurologically healthy humans were analyzed for their content of various monoamines and metabolites using two different dissection methods. The left hemisphere was frozen immediately and subsequently dissected in the frozen state. The right hemisphere was dissected fresh in the autopsy room whereupon the brain parts were put in a freezer. Few significant differences were noted with respect to the monoamine content, indicating that the methods could be considered to be equivalent for the purpose of monoamine analysis.

Aged↗

[Muscle tissue for diagnosis of neuromuscular diseases. Procedures of specimen taking, transport and preparation].

In this review we describe surgical methods for open muscle biopsy. In order to obtain optimal tissue quality, correct handling of the muscle specimens at all stages of the procedure is essential. A technologist who is familiar with the procedure should be present in the operating room. This is important to ensure that specimens for histochemical or biochemical studies are frozen immediately and specimens for electron microscopy are fixed without delay. We describe procedures for processing the specimens for cryostat sections, paraffin sections and electron microscopy, and a simple method for handling muscle specimens in local hospitals before transfer to a hospital with a neuropathological service.

Biopsy↗