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PubMed2004

Big questions, small worlds: microbial model systems in ecology.

Although many biologists have embraced microbial model systems as tools to address genetic and physiological questions, the explicit use of microbial communities as model systems in ecology has traditionally been more restricted. Here, we highlight recent studies that use laboratory-based microbial model systems to address ecological questions. Such studies have significantly advanced our understanding of processes that have proven difficult to study in field systems, including the genetic and biochemical underpinnings of traits involved in ecological interactions, and the ecological differences driving evolutionary change. It is the simplicity of microbial model systems that makes them such powerful tools for the study of ecology. Such simplicity enables the high degrees of experimental control and replication that are necessary to address many questions that are inaccessible through field observation or experimentation.

Journal Article↗
PubMed2005

The CD19-CD21 signal transduction complex of B lymphocytes regulates the balance between health and autoimmune disease: systemic sclerosis as a model system.

Cell-surface CD19 functions as a general rheostat for defining intrinsic and antigen receptor-induced signaling thresholds critical for clonal expansion of the B cell pool and humoral immunity. CD19 also governs B cell responses initiated through the CD21 receptor, where complement C3d binding to CD21 links humoral immune responses with the innate immune system. Alterations in this signaling pathway can predispose mice and humans to autoantibody production and systemic autoimmunity. Transgenic mice that overexpress CD19 by 20-170% lose tolerance and generate autoantibodies. Likewise, B cells from CD21-deficient mice overexpress CD19 by approximately 50%, which leads to autoantibody production. Autoimmune patients with systemic sclerosis also overexpress CD19 by approximately 20%, which may contribute to their intrinsic B cell abnormalities and autoantibody production. Thus, chronic B cell activation resulting from augmented CD19 expression or signaling through the CD19 pathway may reveal a prototype autoimmune disease susceptibility pathway in mice and humans.

Animals↗
PubMed1978

A visual system model and a new distortion measure in the context of image processing.

Underlying many techniques of image restortation, quantization, and enhancement is the mathematically convenient, but visually unsuitable distortion measure of squared difference in intensity. Squared-intensity differences has an indirect phenomenological correspondence in a model of the visual system. We have undertaken, therefore, an experiment that derives a new distortion measure from an acceptable visual system model and compares it in a fair test against squared difference in intensity in an image restoration task. We start with an eye-brain system model inferred from the works of current vision researchers, which consists of a bank of paralles spatial frequency channels and image detectors. From this model we derive a new distortion criterion that is related to changes in the per-channel detection probability and phase angle. The optimal linear (Wiener) filters for each distortion measure operate in turn on the same noisy incoherent images. The results show that the filter for the new distortion measures yields a superior restoration. It is more visually agrreable, more sharply detailed, and truer in contrast compared to the squared-difference filter, and impressive in its own right. Its mathematical properties suggest that significantly increased efficeincy in the storage or communication of images my be gained by its use.

Humans↗
PubMed2005

Orientations of axially coordinated imidazoles and pyridines in crystal structures of model systems of cytochromes.

Many properties of cytochromes and model systems depend on orientations of axial ligands. In this work, we elucidated the role of porphyrin substituents on orientation of axial ligands in model systems of cytochromes. The orientations of axially coordinated imidazoles and pyridines in crystal structures of model systems of cytochromes were analyzed and data were compared with previous quantum-chemical calculations. The results show that eight ethyl groups on porphyrin ring strongly favor parallel orientation, hence, in all these complexes axial ligands, pyridines or imidazoles, are mutually parallel. Four phenyl or mesityl groups at meso-carbons also favor parallel orientation but less strongly. Hence, in most of the bis-imidazole complexes the orientation is parallel, while in bis-pyridine complexes the orientation of pyridines depends on oxidation state of Fe. In bis-pyridine Fe(II) complexes orientation is parallel, in Fe(III) it is orthogonal. This analysis is in agreement with previous quantum-chemical calculations.

Crystallography, X-Ray↗
PubMed2006

Emerging developmental model systems.

This primer briefly describes four emerging animal model systems that promise to provide insights into specific aspects of developmental biology. Highlighted here are two relatively well-characterized model systems, Gasterosteus aculeatus (three-spine stickleback fish) and Schmidtea mediterranea (planarian), as well as two organisms on which research is in its infancy, Carollia perspicillata (short-tailed fruit bat), and the basal metazoan, Trichoplax adhaerens. Scientists who helped develop these species into model systems discuss why they chose to research these animals.

Animals↗
PubMed1993

Effects of edible oils and fatty acids on the formation of mutagenic heterocyclic amines in a model system.

The effects of glycerol, fatty acids and oils on the yield and species of mutagenic heterocyclic amines were studied in a model system. The addition of lipids to the model system did not affect the species of food mutagens formed, but did affect the yield of 2-amino-3,8-dimethylimidazo[4,5-f]quinoxaline (MeIQx). When heating creatinine, glycine and glucose dissolved in water, at 180 degrees C for 10 and 30 min, 9 and 18 nmol MeIQx/mmol creatinine were formed respectively. Corresponding figures of MeIQx formed, after addition of various fatty acids or edible oils to the model system, were as follows: oleic acid (9 and 11 nmol MeIQx/mmol creatinine), stearic acid (16 and 19 nmol), linoleic acid (8 and 16 nmol), linolenic acid (5 and 20 nmol), corn oil (10 and 33 nmol) and olive oil (10 and 28 nmol) after heating at 180 degrees C for 10 and 30 min respectively. Addition of corn or olive oil in a model system heated at 180 degrees C for 30 min, almost doubled the yield of MeIQx formed, compared with the amount formed in a model system without fat. This increase was not observed if glycerol or a fatty acid was added to the model system.

Amines↗
PubMed1990

A model system for the study of food container leakage.

A model system to study food container leakage was developed. The model system allows the independent investigation of the effect of physical factors such as vacuum and contents viscosity, and microbial factors on the leakage process. The design, construction and operation of the container leakage model system is described.

Bacteria↗
PubMed2003

The Neuman Systems Model Institute: testing middle-range theories.

The credibility of the Neuman systems model can only be established through the generation and testing of Neuman systems model-derived middle-range theories. However, due to the number and complexity of Neuman systems model concepts/concept interrelations and the diversity of middle-range theory concepts linked to these Neuman systems model concepts by researchers, no explicit middle-range theories have yet been derived from the Neuman systems model. This article describes the development of an organized program for the systematic study of the Neuman systems model. Preliminary work, already accomplished, is detailed, and a tentative plan for the completion of further preliminary work as well as beginning the actual research conduction phase is proposed.

Academies and Institutes↗
PubMed1976

Model systems for dissolution of finely divided (multisized) drug powders.

Several reports have dealt with model systems for the dissolution of log-normally distributed powders. A numerical solution is presented for the previously published Higuchi-Hiestand equations for a log-normal particle-size distribution. This solution was realized via an application of the System 360 Continuous System Modeling Program (CSMP). The resulting computer-aided calculations were utilized in the comparisons between the Higuchi-Hiestand model and other existing models. These comparisons provided a basis for the development of an adaptation of the Nielsen moving sphere model for log-normally distributed powders. The adaptation of the Nielsen equation for multisized particle systems is suggested as being potentially useful for treating experimental data where hydrodynamic effects must be considered.

Chemical Phenomena↗
PubMed2000

Structure-related aspects on water diffusivity in fatty acid-soap and skin lipid model systems.

Simplified skin barrier models are necessary to get a first hand understanding of the very complex morphology and physical properties of the human skin barrier. In addition, it is of great importance to construct relevant models that will allow for rational testing of barrier perturbing/occlusive effects of a large variety of substances. The primary objective of this work was to study the effect of lipid morphology on water permeation through various lipid mixtures (i.e., partly neutralised free fatty acids, as well as a skin lipid model mixture). In addition, the effects of incorporating Azone((R)) (1-dodecyl-azacycloheptan-2-one) into the skin lipid model mixture was studied. Small- and wide-angle X-ray diffraction was used for structure determinations. It is concluded that: (a) the water flux through a crystalline fatty acid-sodium soap-water mixture (s) is statistically significantly higher than the water flux through the corresponding lamellar (L(alpha)) and reversed hexagonal (H(II)) liquid crystalline phases, which do not differ between themselves; (b) the water flux through mixtures of L(alpha)/s decreases statistically significantly with increasing relative amounts of lamellar (L(alpha)) liquid crystalline phase; (c) the addition of Azone((R)) to a skin lipid model system induces a reduction in water flux. However, further studies are needed to more closely characterise the structural basis for the occlusive effects of Azone((R)) on water flux.

Azepines↗
PubMed1999

Describing behavioral states using a system model of the primate brain.

A system model of the primate neocortex is presented, based mainly on the neuroanatomy of the rhesus macaque monkey and consisting of a set of processing modules arranged as a perception-action hierarchy. These modules correspond to regions of the neocortex and their connectivity to that of the neocortex. A computational approach based on predicate logic is explained, and the results of a computer implementation of the model are reported, which demonstrate social behaviors involving affiliation and social conflict. The behavioral states of primates involved in these behaviors can be represented by the states of the system model, which have a logical representation and a diagrammatic form. It is shown how the behavioral states in goal-directed behaviors can be represented and also their short term moment-to-moment development in time. It is then shown how the state of social interaction among two or more primates can be represented, using their individual behavioral states, with interindividual action and perception. The causal dynamics of behavioral states is explained and also a control mechanism, namely, the use of confirmation signals, which stabilizes behavioral states and their dynamics. Stabilized behavioral states are seen as corresponding to coherent activations of the system, resulting from successful selection of module activations and intermodule communication with confirmation.

Animals↗
PubMed1980

Transepithelial migration of human neutrophils: an in vitro model system.

An in vitro model system for studying transepithelial migration of human neutrophils has been developed. Canine kidney epithelial cells grown on micropore filters form a confluent, polarized monolayer with an average transepithelial electrical resistance of 181 ohms.cm2. Neutrophils in a chemotactic chamber are stimulated to undergo random migration, chemokinesis, or chemotaxis through the epithelium. When stimulated by a gradient of the synthetic chemoattractant fMet-Leu-Phe, significantly more neutrophils traverse the low-resistance epithelium than do under conditions of random migration or chemokinesis. Transmission and scanning electron microscopy of this process reveal that neutrophils traverse the epithelium through the intercellular space. After leukocyte emigration, lateral epithelial cell membranes reapproximate. Neutrophils undergoing chemotaxis can also traverse the polarized epithelium from the basal epithelial surface, which suggests that the chemotactic gradient and not the apical-basal polarity of the epithelial cells determines the direction of transepithelial migration. The data further suggest that (i) the in vitro model of leukocyte transepithelial migration morphologically simulates the in vivo process, (ii) neutrophils more readily penetrate the epithelium when attracted by a chemotactic factor, and (iii) neutrophils can traverse a low-resistance epithelium in the absence of serum and connective tissue factors.

Animals↗
PubMed2006

A geometric system model of finite aperture in small animal pinhole SPECT imaging.

Accurate system modeling of the photon acquisition process is essential for optimizing quality in pinhole SPECT imaging. Conventional pinhole SPECT imaging assumes ideal pinhole geometry. However, neglect of pinhole finite aperture could lead to unfavorable quality degradations, such as positioning bias and image distortion. In this work, we develop a system model in which the aperture width of a pinhole collimator is explicitly included. The system model describes the probability of a single photon from its emission to detection. The probability value is calculated based on the effective intersection area resulting from a simulated cone-beam light source emitting from the image voxel, passing through a finite aperture, and reaching the detector's frontal face. The proposed model can be integrated with the ordered subsets expectation maximization (OSEM) algorithm for fast 3D statistical image reconstruction. Monte Carlo-based phantom experiments are used to evaluate the performance of the proposed system model compared to the ideal pinhole model. Reconstructed image results demonstrate that the proposed model can improve image quality in terms of reducing location bias and maintaining better contrast recovery.

Algorithms↗
PubMed2005

Kinetics of acrylamide formation and elimination during heating of an asparagine-sugar model system.

The kinetics of acrylamide (AA) was analyzed by heating a simple model system consisting of asparagine and glucose, fructose, or sucrose (0.01 M, pH 6) at temperatures between 140 and 200 degrees C. The AA concentration appeared to be the net result of simultaneous formation and elimination. A general kinetic model describing the AA yield was identified, and kinetic parameters were obtained by nonlinear regression on the nonisothermally derived data. On the basis of kinetic parameters, the AA formation appeared to proceed faster and to be more temperature sensitive in the asparagine-glucose than in the asparagine-fructose model system. The AA elimination kinetics, on the other hand, was similar. Significantly less AA was formed in the asparagine-sucrose model system as compared to the model systems with glucose or fructose.

Acrylamide↗
PubMed1976

Stresses created by occlusal prematurities in a new photoelastic model system.

A new photoelastic model system incorporating a simulated periodontal ligament sleeve around an experimental first molar has been developed. The system was used to visualize internal compressive stresses created by various premature occlusal incline relationships in both buccolingual and mesiodistal dimensions. When prematurities were applied singly and observed buccolingually, both class 1 and and class 2 prematurities produced stresses along the lingual aspect of the root, whereas the class 3 prematurity produced stresses along the buccal aspect of the root. When viewed buccolingually, combinations of class 1 and class 2 prematurities resulted in stresses along the lingual aspect of the root. The stress pattern was similar to those created by the single class 1 or class 2 prematurities. A combination of class 2 and class 3 prematurities did not produce a well-defined indication of stress distribution. There was slightly more stress along the buccal aspect of the root. Comparison of this combination with individual class 2 and class 3 prematurities indicates that such a combination tended to diminish tipping of the tooth in any one direction. A combination of class 1 and class 3 prematurities showed slightly greater stress along the buccal aspect of the root surface. Again, the combination produced less tipping of the tooth in any one direction when compared with tipping caused by the individual prematurities. When all three prematurities were tested at the same time, the stress pattern was almost coincident with that achieved in the absence of prematurities. When prematurities were observed mesiodistally, the location of stresses was dependent on the mesial or distal placement of the prematurity, irrespective of its position buccolingually.

Dental Occlusion, Traumatic↗
PubMed2005

A first order system model of fracture healing.

A first order system model is proposed for simulating the influence of stress stimulation on fracture strength during fracture healing. To validate the model, the diaphyses of bilateral tibiae in 70 New Zealand rabbits were osteotomized and fixed with rigid plates and stress-relaxation plates, respectively. Stress shielding rate and ultimate bending strength of the healing bone were measured at 2 to 48 weeks postoperatively. Ratios of stress stimulation and fracture strength of the healing bone to those of intact bone were taken as the system input and output. The assumed first order system model can approximate the experimental data on fracture strength from the input of stress stimulation over time, both for the rigid plate group and the stress-relaxation plate group, with different system parameters of time constant and gain. The fitting curve indicates that the effect of mechanical stimulus occurs mainly in late stages of healing. First order system can model the stress adaptation process of fracture healing. This approach presents a simple bio-mathematical model of the relationship between stress stimulation and fracture strength, and has the potential to optimize planning of functional exercises and conduct parametric studies.

Animals↗
PubMed2000

Lipid oxidation in a chicken muscle model system: oxidative response of lipid classes to iron ascorbate or methemoglobin catalysis.

Catalysis by iron ascorbate and activated methemoglobin generated different oxidative responses in chicken muscle model systems. In iron ascorbate systems, large increases in hydroperoxides and thiobarbituric acid-reactive substances (TBARS) occurred during the initial stage of incubation. Thereafter, iron ascorbate catalysis led to a slow increase in the oxidation of triacylglcyerol (TG) and sarcoplasmic reticulum (SR) membrane lipids. By the end of incubation, 24, 36, and 32% of the initial content of n-3 fatty acids in free fatty acids, TG, and SR single-lipid model systems catalyzed by iron ascorbate had been lost. Reduced losses of n-3 fatty acids were observed in the SR and TG fractions (0 and 24%, respectively) when iron ascorbate model systems contained all three lipid fractions (mix). Hydroperoxides and TBARS in model systems catalyzed by activated methemoglobin were characterized by a lag phase during most of the incubation. Consistent with their role as antioxidants, losses of alpha-tocopherol (42-49%), gamma-tocopherol (36-42%), and protein sulfhydryls (41-52%) were observed in model systems catalyzed by activated methemoglobin. SR and mix model systems were 30-50% slower to oxidize than TG model systems when activated methemoglobin served as the catalytic agent.

Animals↗