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At least 91 records · Page 5Linked to original sources
PubMed1996

Is there a link between changes in the vertebral "hox code" and the shape of vertebrae? A quantitative study of shape change in the cervical vertebral column of mice.

Homeobox (hox) genes are of considerable importance in the formation of the body axis of invertebrates and vertebrates. The postulation of a hox-code (i.e. the simultaneous activity of a certain subset of hox genes) for structures at different metameric levels and which differ from each other in shape suggests a relationship between hox-code and shape, which is reinforced by the possibility of homeotic transformation when the hox-code is changed experimentally. This paper considers the possible nature of such a relationship between the hox genes governing vertebral formation in the upper part of the mouse vertebral column and the shape of the adult vertebrae formed in this region.

Animals↗
PubMed2002

Measuring size and shape of the hippocampus in MR images using a deformable shape model.

A method for segmentation and quantification of the shape and size of the hippocampus is proposed, based on an automated image analysis algorithm. The algorithm uses a deformable shape model to locate the hippocampus in magnetic resonance images and to determine a geometric representation of its boundary. The deformable model combines three types of information. First, it employs information about the geometric properties of the hippocampal boundary, from a local and relatively finer scale to a more global and relatively coarser scale. Second, the model includes a statistical characterization of normal shape variation across individuals, serving as prior knowledge to the algorithm. Third, the algorithm utilizes a number of manually defined boundary points, which can help guide the model deformation to the appropriate boundaries, wherever these boundaries are weak or not clearly defined in MR images. Excellent agreement is demonstrated between the algorithm and manual segmentations by well-trained raters, with a correlation coefficient equal to 0.97 and algorithm/rater differences statistically equivalent to interrater differences for manual definitions.

Algorithms↗
PubMed2003

Neural activity in prefrontal cortex during copying geometrical shapes. II. Decoding shape segments from neural ensembles.

We trained two monkeys to draw copies of geometrical shapes (e.g. squares, triangles) using a joystick, and found that several variables describing the arm trajectories were encoded in the activity of individual prefrontal neurons (Averbeck et al. 2003). Copy trajectories were drawn as sequences of segments, identified by the serial order in which they were drawn and the shape that they together produced. Here we use linear discriminant analysis to test how well the segments of copied shapes could be decoded from the neural activity patterns of small ensembles (3-22 neurons) of simultaneously recorded cells in prefrontal cortex. Using this analysis, the proper segment (drawn by the monkey) was correctly decoded from the ensemble activity pattern during the drawing of that segment in 60-80% of the cases when the largest ensembles were considered. The information transmitted by these ensembles, as well as by single neurons, was also calculated. We found that the information transmitted by the ensembles increased on average with the number of neurons they contained. Each neuron conveyed information about multiple segments within the drawing trajectory, suggesting that neurons were 'broadly tuned' across segments and that the neural code of segment was distributed.

Action Potentials↗
PubMed2004

About the equilibrium shape of fibred structures, and biological shapes.

Biological morphogenesis has often been modeled with reaction-diffusion models [A.M. Turing, The chemical basis of morphogenesis, Phil. Trans. R. Soc. Lond. B 237 (1952) 37-72]. The interplay of bio-chemical fields is supposed to generate shapes by positional information carried by the values in the field. However, the structure of the biological tissue at the microscopic scale is absent from these models. We show that the fibred nature of biological tissue induces specific morphogenic properties. Fibred shapes can be calculated from physical principles borrowed from the theory of crystallogenesis. These give an intuitive insight into the shape of fruits or vegetables, buds and pins in botany, fingers, muscles, insects abdomen and heart in the animal realm, and also into other fibred structures such as the mitotic spindle. We predict the existence of bumps, apices or cusps at poles of fibred structures. An extrapolation to out-of-equilibrium growth predicts that these structures grow forward in the direction of the cusp, and that fibred organs should have a regular branching ordering. However, our model does not take into account the elasto-plastic properties, or the composite nature of the living material.

Biophysical Phenomena↗
PubMed2002

Echinocyte shapes: bending, stretching, and shear determine spicule shape and spacing.

We study the shapes of human red blood cells using continuum mechanics. In particular, we model the crenated, echinocytic shapes and show how they may arise from a competition between the bending energy of the plasma membrane and the stretching/shear elastic energies of the membrane skeleton. In contrast to earlier work, we calculate spicule shapes exactly by solving the equations of continuum mechanics subject to appropriate boundary conditions. A simple scaling analysis of this competition reveals an elastic length Lambda(el), which sets the length scale for the spicules and is, thus, related to the number of spicules experimentally observed on the fully developed echinocyte.

Animals↗
PubMed1992

Shapes of reaction-time distributions and shapes of learning curves: a test of the instance theory of automaticity.

The instance theory assumes that automatic performance is based on single-step direct-access retrieval from memory of prior solutions to present problems. The theory predicts that the shape of the learning curve depends on the shape of the distribution of retrieval times. One can deduce from the fundamental assumptions of the theory that (1) the entire distribution of reaction times, not just the mean, will decrease as a power function of practice; (2) asymptotically, the retrieval-time distribution must be a Weibull distribution; and (3) the exponent of the Weibull, which is the parameter that determines its shape, must be the reciprocal of the exponent of the power function. These predictions were tested and mostly confirmed in 12 data sets from 2 experiments. The ability of the instance theory to predict the power law is contrasted with the ability of other theories to account for it.

Attention↗
PubMed1998

'D-shaped' and 'reverse-D-shaped' pupil in a cat with lymphosarcoma.

A 7-year-old female spayed European shorthair cat was presented because of visual reduction and a green reflex in the right eye. Examination revealed a 'D-shaped' pupil in the right eye and a 'reverse-D-shaped' pupil in the left eye. Both eyes showed fibrinous anterior uveitis with exudates in the anterior chamber and precipitates on the posterior surface of the cornea. In both eyes a chorioretinitis was diagnosed which caused partial retinal detachment and peripapillary oedema in the left eye. Histopathology revealed intestinal and ocular lymphosarcoma. The aberrant pupil shapes which persisted after death were due to infiltration of the iris stroma and were not caused neurologically. The observation that in both eyes only the medial parts of the iris were affected could not be explained.

Journal Article↗
PubMed2005

Alcohol and atherosclerotic vascular disease risk factors in French men: relationships are linear, J-shaped, and U-shaped.

BACKGROUND: Although it is well admitted that alcohol displays a U-shaped relationship with atherosclerotic vascular disease, individual relationships between alcohol and atherosclerosis risk factors may be different and have not been determined precisely for several of them. METHODS: A cross-sectional study within the SU.VI.MAX French cohort study was performed to assess the curve of potential relationships between alcohol and atherosclerosis risk factors in 2126 healthy men. Mean daily alcohol intake was derived from 37 alcoholic beverages in twelve 24-hr dietary recalls. Logistic models were adjusted for age. RESULTS: Apolipoprotein B (ApoB), fasting glucose, body mass index, waist-to-hip ratio, and waist circumference displayed a linear relationship with alcohol. The odds ratios and 95% confidence intervals associated with abnormal values of the markers for the highest quintile of alcohol intake were 1.45 (1.06-1.97) for ApoB, 1.98 (1.40-2.80) for fasting glucose, and 1.74 (1.30-2.34) for body mass index. An inverse J-shaped relationship was assumed for ApoA1 and ApoB/ApoA1 ratio, whereas a U-shaped relationship was observed for serum triglycerides and mixed hyperlipidemia. Only the highest quintile of alcohol was associated with hypertension, although the test for linearity was also significant. No association was observed for Lp(a) or homocysteine. Associations were unmodified by further adjustment for carbohydrates, fiber, lipids, tobacco, or exercise. CONCLUSIONS: The aggregate of the disparate alcohol risk factor relationships suggests probable net benefit at 15 to 25 g of alcohol/day.

Alcohol Drinking↗
PubMed2004

Shape deformation and circle instability in two-dimensional lipid domains by dipolar force: a shape- and size-dependent line tension model.

The dipolar energy of a solid monolayer domain surrounded by a fluid phase at an air-water interface is derived approximately as a sum of an additionally negative line tension and a curvature-elastic energy at the boundary. Variation of the domain energy yields an equilibrium domain shape equation. The obvious solutions of the domain shape equation clearly predict a circle, torus, D-form, S-form, and serpentine manner shape found experimentally, depending on the difference in the Gibbs free energy between the solid and fluid phases and the total line tension. Analysis of linear instability for a circle with a fixed area shows that, above a threshold size, the circle can be deformed into an m-sided quasipolygon. The good agreement with the observation and numerical calculation reported by Lee and McConnell [J. Phys. Chem. 91, 9532 (1993)]] shows the quantitative validity of the present theory.

Lipids↗
PubMed1999

Segmentation, registration, and measurement of shape variation via image object shape.

A model of object shape by nets of medial and boundary primitives is justified as richly capturing multiple aspects of shape and yet requiring representation space and image analysis work proportional to the number of primitives. Metrics are described that compute an object representation's prior probability of local geometry by reflecting variabilities in the net's node and link parameter values, and that compute a likelihood function measuring the degree of match of an image to that object representation. A paradigm for image analysis of deforming such a model to optimize a posteriori probability is described, and this paradigm is shown to be usable as a uniform approach for object definition, object-based registration between images of the same or different imaging modalities, and measurement of shape variation of an abnormal anatomical object, compared with a normal anatomical object. Examples of applications of these methods in radiotherapy, surgery, and psychiatry are given.

Bayes Theorem↗
PubMedDate not supplied

A study of family head shape: environment alters cranial shape.

A change in the type of cranial deformities (plagiocephaly) presenting to certain clinics has occurred. The purpose of this study was to compare infant head shapes against head shapes of their biologic parents to explore the roles of heredity and environment on cranial shape. Standardized family photographs and anthropometric measurements demonstrated that 30% of the infants had cranial widths 2 standard deviations above norm, while 4.6% had widths exceeding 3 standard deviations. Despite a mean age of only 8 months, 11.6% had widths that were already greater than that of 1 parent. These results demonstrate that plagiocephaly has taken on a new configuration, presenting not only with asymmetry, but also with excessive cranial width.

Adult↗
PubMed2006

Commercial reference shape standards use in the study of particle shape effect on laser diffraction particle size analysis.

The purpose of this paper is to describe the use of LGC Promochem AEA 1001 to AEA 1003 monosized fiber-analog shape standards in the study of the effect of particle shape on laser diffraction (LD) particle size analysis (psa). The psa of the AEA standards was conducted using LD psa systems from Beckman Coulter, Horiba, and Malvern Instruments. Flow speed settings, sample refractive index values, and sample cell types were varied to examine the extent to which the shape effect on LD psa results is modified by these variables. The volume and number probability plots resulting from these measurements were each characterized by a spread in the particle size distribution that roughly extended from the breadth to the longest dimension of the particles. For most of the selected sample refractive index values, the volume probability plots were characterized by apparent bimodal distributions. The results, therefore, provide experimental verification of the conclusions from theoretical studies of LD psa system response to monosized elliptical particles in which this apparent bimodality was the predicted result in the case of flow-oriented particles. The data support the findings from previous studies conducted over the past 10 years that have called into question the verity of the tenets of, and therefore the value of the application of, the equivalent spherical volume diameter theory and the random particle orientation model to the interpretation of LD psa results from measurements made on nonspherical particles.

Drug Evaluation, Preclinical↗
PubMed2003

Shape recovery of shape memory alloy fiber embedded resin matrix smart composite after crack repair.

Ni-Ti shape memory alloy fiber embedded resin matrix composites were produced for evaluation of "smart denture", a newly developing denture with the function to close its own crack. Their bending strength and shape recovery after instant crack repair was estimated. The embedded fibers did not decrease the bending strength of the composite after repair. The crack closure of the composites was performed well simply by heating at 80 degrees C. Nevertheless, they showed apparent deflection after crack repair. The following two phenomena were supposed to be the main cause of it: the polymerization shrinkage of matrix resin with heating, and the coefficient of the thermal expansion mismatch between the fiber and the matrix. The embedded fibers could close the crack of the matrix with enough high accuracy for specimen repair, but they turned out to change the specimen shape after repair.

Acrylic Resins↗
PubMed2003

Swan-shaped bone fixation device made of Ni-Ti shape memory alloy for treating humeral fracture in rabbits.

OBJECTIVE: To establish the animal model for treating humeral fracture with swan-shaped bone fixation device made of Ni-Ti shape memory alloy. METHODS: Models of humeral fractures was established in 30 rabbits and on one side the fracture was fixed with the Ni-Ti shape memory alloy device (SMC side) and on the other with 4-hole dynamic compression plate (DCP side). Anteroposterior radiograph of both humeri were taken at the time points of 2, 4, 8, and 12 weeks respectively after operation. RESULTS: All the rabbits survived the experiment and their forelimbs bore obviously less weight than hindlimb. In SMC side, the humeral fracture healed without either osteoporosis or external callus. The fracture healing in DCP side gave rise to obvious external callus formation, and the healing process took significantly longer time than in SMC group. CONCLUSION: The humerus of rabbit is similar to human humerus in view of their anatomic morphology and biomechanical properties, therefore rabbit humeral fracture models can be ideal for exploring the mechanism of fracture healing induced by the alloy device.

Animals↗
PubMedDate not supplied

[Shape and amplitude of stimulating postsynaptic potentials in a neuronal model with an N-shaped volt-ampere characteristic of the dendritic membrane].

We developed a model of a neuron with N-shaped current--voltage characteristic of dendritic membrane and studied the change of shape and amplitude of excitatory postsynaptic potentials (EPSP) when changing the place of synapses on dendrites. Local EPSP can activate slow inward current. Consequently, the EPSP amplitude does not always diminish when the rise- and decay-time increases. In some cases the rise- and decay-time of a more distant synapse may become shorter than that of the more approximate one. The common method of judging about the location of synapses by means of the shape of EPSPs may be wrong.

Cell Membrane↗
PubMed1984

Activation of phospholipase C is dissociated from arachidonate metabolism during platelet shape change induced by thrombin or platelet-activating factor. Epinephrine does not induce phospholipase C activation or platelet shape change.

The present study compares the molecular mechanism by which thrombin, platelet-activating factor, and epinephrine induce platelet activation. Thrombin and platelet-activating factor induce an initial activation of phospholipase C, as measured by formation of 1,2-diacylglycerol and phosphatidic acid, during platelet shape change which is independent of and dissociated from metabolism of arachidonic acid. Phospholipase C activation and shape change are independent of extracellular Ca2+ and Mg2+. Formation of cyclooxygenase products occurs subsequent to the initial activation of phospholipase C and those metabolites are associated with platelet aggregation and further activation of phospholipase C. On the other hand, epinephrine is an unique platelet stimulus since it requires extracellular divalent cations and does not induce platelet shape change or activation of phospholipase C. Our results indicate that activation of phospholipase C may be a mechanism by which physiological agonists can activate platelets independently of extracellular divalent cations.

Arachidonic Acid↗
PubMed2005

Metal-directed synthesis and photophysical studies of trinuclear v-shaped and pentanuclear x-shaped ruthenium and osmium metallorods and metallostars based upon 4'-(3,5-dihydroxyphenyl)-2,2':6',2''-terpyridine divergent units.

A new series of V-shaped trinuclear metallorods and X-shaped pentanuclear metallostars has been prepared by the reaction of metal complexes bearing pendant phenolic functionalities with complexes containing electrophilic ligands. Specifically, {M(tpy)2} motifs (M=Ru or Os; tpy=2,2':6',2''-terpyridine) bearing one or two pendant 3,5-dihydroxyphenyl substituents at the 4-position of the central ring of the tpy have been reacted with the complexes [Ru(tpy)(Xtpy)]2+ (X=Cl or Br) to form new ether-linked species. The energy transfer from ruthenium to osmium in these complexes has been investigated in detail and the efficiency of transfer shown to be highly temperature dependent; the energy transfer is highly efficient at low temperature, whereas at room temperature nonradiative and nontransfer deactivation of the excited {Ru(tpy)2}* domains is most significant.

Journal Article↗
PubMed2007

Control of channel shapes in a microporous manganese(II)-borophosphate framework by variation of size and shape of organic template cations.

The templated microporous compounds [H2(Templ.)][MnII{B2P3O12(OH)}], [templates: 1,3-diaminopropane, C3H10N2 (DAP); piperazine, C4H10N2 (PIP); 1,4-diazacyclo[2.2.2]octane, C6H12N2 (DABCO)] were prepared under mild hydrothermal conditions. The crystal structures (H2DAP-Mn: Pmc2(1) (no. 26), a=1259.43(5), b=949.86(5), c=1135.92(5) pm, Z=4; H2PIP-Mn: Ima2 (no. 46), a=1257.9(1), b=948.69(8), c=1158.19(8) pm, Z=4; H2DABCO-H2PIP-Mn: Ima2 (no. 46), a=1262.90(7), b=961.05(5), c=1151.42(7) pm, Z=4) are characterized by identical framework connectivities [MnII{B2P3O12(OH)}]2-, but vary in shapes (diameters) of the structural channels depending on the shapes of the templating molecule ions. The situation clearly reflects the directing effect of true templates during endotemplating reactions. The experimental results (preparation, chemical analyses, and X-ray refinements) are supported by detailed ab initio calculations (structure optimizations).

Journal Article↗