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PubMed2001

A probabilistic approach to space-group determination from powder diffraction data.

An algorithm for the determination of the space-group symmetry of a crystal from powder diffraction data, based upon probability theory, is described. Specifically, the relative probabilities of different extinction symbols are assessed within a particular crystal system. In general, only a small number of extinction symbols are relatively highly probable and a single extinction symbol is often significantly more probable than any other. Several examples are presented to illustrate this approach.

Journal Article↗
PubMed2006

X-Ray fiber and powder diffraction of PrP prion peptides.

A conformational change from the alpha-helical, cellular form of prion to the beta-sheet, scrapie (infectious) form is the central event for prion replication. The folding mechanism underlying this conformational change has not yet been deciphered. Here, we review prion pathology and summarize X-ray fiber and powder diffraction studies on the N-terminal fragments of prion protein and on short sequences that initiate the beta-assembly for various fibrils, including poly(L-alanine) and poly(L-glutamine). We discuss how the quarter-staggered beta-sheet assembly (like in polyalanine) and polar-zipper beta-sheet formation (like in polyglutamine) may be involved in the formation of the scrapie form of prion.

Powder Diffraction↗
PubMed1994

High-pressure powder diffraction on synchrotron sources.

The sample volume in diamond-anvil pressure cells suitable for X-ray powder diffraction studies is very small (</= 100 mum across). The resulting low signal-to-noise ratio has made it very difficult to obtain useful results with monochromatic angle-dispersive techniques, and the alternative white- beam energy-dispersive techniques have limited resolution and generally give unreliable peak intensities. The situation has been transformed recently by the introduction of the image-plate two-dimensional detector, which allows angle-dispersive methods to be used with a greatly increased signal and improved powder averaging. A short review is given of this development, the experimental techniques, and the principal advantages, particularly as found in results obtained at SRS Daresbury over the past two or three years.

Journal Article↗
PubMed2003

A new method for the detection of low levels of free fibres of chrysotile in contaminated soils by X-ray powder diffraction.

A new method for the determination of free fibres of chrysotile in contaminated soils is described. The detection limit of 0.5 wt per thousand is reached by an enrichment process of the asbestos fraction of the sample using a standard laboratory elutriator for sedimentation analysis. The analysis of the enriched fraction is performed by X-ray powder diffraction using a conventional instrument. The procedure can be successfully applied to several soils of different nature throughout thermal treatment and removal of possible interferences due to some matrix components. This method is straightforward, routinized and has been especially developed to fulfil the request of public and private institutions for an appropriate quantitative determination of chrysotile free fibres in contaminated soils.

Asbestos, Serpentine↗
PubMed2003

Neutron powder diffraction studies of silicon-substituted hydroxyapatite.

The incorporation of a small amount of silicon in the hydroxyapatite (HAp) lattice is known to improve the bioactivity of the material. The effect of silicon substitution was studied by comparing samples of pure and 0.4wt% silicon-substituted HAp prepared by an aqueous precipitation method. High-resolution neutron powder diffraction and Rietveld refinement methods were used to investigate the effect of silicon substitution on the crystal structure parameters of the HAp lattice from room temperature down to 20K. Small structural changes in the lattice constants, interatomic distances, site occupancies and distortion of the phosphate tetrahedron were found. Modifications of the Fourier transform infrared spectra as well as appearance of new modes were observed in the silicon-substituted sample. Heat treatment and silicon substitution also affected the morphology and crystallinity of this bioapatite.

Biocompatible Materials↗
PubMed2004

Bulk material vs. single crystal: powder diffraction to the rescue.

The crystal structure of bulk microcrystalline material obtained by interaction of two rigid building blocks, namely dirhodium(ii) tetra(trifluoroacetate), [Rh2(O2CCF3)4], and bis(4'-pyridyl)diphenylsilane, (C6H5)2Si(C5H4N)2, has been solved ab initio using X-ray powder diffraction data. The title product of the 1 [ratio] 1 composition, [Rh2(O2CCF3)4.(mu2-(C6H5)2Si(C5H4N)2)], is a one-dimensional zigzag polymer built on axial Rh...N interactions averaged at 2.16 A. Its structural characterization complements the previously reported product of the 2:1 composition obtained from the same reaction, namely {[Rh2(O2CCF3)4]2.(mu4-(C6H5)2Si(C5H4N)2)}. The latter has a 2D layered network revealed by the single crystal diffraction study. A combination of powder and single crystal X-ray techniques is shown to be methodologically important and complementary for understanding of product assembling in the system.

Journal Article↗
PubMed2004

Synchrotron X-ray powder diffraction and computational investigation of purely siliceous zeolite Y under pressure.

High-pressure synchrotron X-ray powder diffraction measurements of a sample of purely siliceous zeolite Y (faujasite) were carried out up to 8.0 GPa at room temperature using a diamond anvil cell. Measurements using silicone oil as the pressure-transmitting medium show compression of the zeolite followed by a loss of long-range ordering at 2.2 GPa. The experimentally determined bulk modulus, 38(2) GPa, is, within experimental error, identical to that of quartz. When using a methanol:ethanol:water mixture (16:3:1) as the pressure-transmitting medium, two distinct compressibility regions are observed with a dramatic change in the compression mechanism at 4 GPa. Rietveld refinement analysis of the powder patterns provides a detailed description of the underlying chemistry, with sequential pore filling the main response up to 4 GPa and framework distortions at higher pressures.

Journal Article↗
PubMed2003

Polymorphism of ceramide 3. Part 2: a vibrational spectroscopic and X-ray powder diffraction investigation of N-octadecanoyl phytosphingosine and the analogous specifically deuterated d(35) derivative.

In order to characterize the arrangements of the hydrocarbon chains of ceramide 3, the thermotropic phase behaviour of the ceramides N-octadecanoylphytosphingosine (CER3) and its chain deuterated derivative N-(d(35)-octadecanoyl)phytosphingosine (d(35)CER3) was studied by means of X-ray powder diffraction, FT-IR and Raman spectroscopy. CER3 and d(35)CER3 exhibit an identical thermotropic polymorphism involving three different crystalline phases. The selective deuteration of the fatty acid chain enables to distinguish the sphingoid part from the fatty acid part by means of FT-IR and Raman spectroscopy. It could be shown that both hydrocarbon chains are arranged in different subcells. Temperature dependent Raman measurements elucidate simultaneously the changes in the trans/gauche ratios and the packing of both the hydrocarbon chains of the fatty acid and of the sphingoid part. The phase behaviour of CER3 and d(35)CER3, both dry and hydrated, was investigated.

Deuterium↗
PubMed2005

An unprecedented process involving normal and redox transmetallation reactions between Hg and Pt affording the unexpected K[Pt2[CH2C(O)Me]6(mu-Cl)3] complex: the key role of X-ray powder diffraction in unravelling its nature and structure.

[Hg{CH2C(O)Me}2] reacts with K[PtCl3(CH2=CH2)](2 : 1 molar ratio) to give K[Pt2{CH2C(O)Me}6(mu-Cl)3] (1); the intermediate [Pt{CH2C(O)Me}Cl2(CH2=CH2)]- has been detected in solution and isolated as a Me4N+ salt; the process occurs through successive normal and redox transmetallation reactions and an ab initio X-ray powder diffraction study of has proven to be essential to establish its nature.

Crystallization↗
PubMed2001

Quantitative analysis of crystalline pharmaceuticals in powders and tablets by a pattern-fitting procedure using X-ray powder diffraction data.

A pattern-fitting procedure for quantitative analysis of crystalline pharmaceuticals in solid dosage forms using X-ray powder diffraction data is described. This method is based on a procedure for pattern-fitting in crystal structure refinement, and observed X-ray scattering intensities were fitted to analytical expressions including some fitting parameters, i.e. scale factor, peak positions, peak widths and degree of preferred orientation of the crystallites. All fitting parameters were optimized by the non-linear least-squares procedure. Then the weight fraction of each component was determined from the optimized scale factors. In the present study, well-crystallized binary systems, zinc oxide-zinc sulfide (ZnO-ZnS) and salicylic acid-benzoic acid (SA-BA), were used as the samples. In analysis of the ZnO-ZnS system, the weight fraction of ZnO or ZnS could be determined quantitatively in the range of 5-95% in the case of both powders and tablets. In analysis of the SA-BA systems, the weight fraction of SA or BA could be determined quantitatively in the range of 20-80% in the case of both powders and tablets. Quantitative analysis applying this pattern-fitting procedure showed better reproducibility than other X-ray methods based on the linear or integral intensities of particular diffraction peaks. Analysis using this pattern-fitting procedure also has the advantage that the preferred orientation of the crystallites in solid dosage forms can be also determined in the course of quantitative analysis.

Benzoic Acid↗
PubMed2006

Observation of hydrogen in deuterated methane hydrate by maximum entropy method with neutron powder diffraction.

The crystal structure of deuterated methane hydrate (structure I, space group: Pm(-)3n) was investigated by neutron powder diffraction at temperatures of 7.7-185 K. The scattering amplitude density distribution was examined by a combination of Rietveld method and maximum entropy method (MEM). The distribution of the D atoms in both D(2)O and CD(4) molecules was clarified from three-dimensional graphic images of the scattering amplitude density. The MEM results showed that there were low-density sites for the D atom of D(2)O in a particular location within the D(2)O cage at low temperatures. The MEM provided more reasonable results because of the decrease in the R factor that is attainable by this method. Accordingly, the low-density sites for the D atom of D(2)O probably exist within the D(2)O cage. This suggests that a spatial disorder of the D atom of D(2)O occurs at these sites and that hydrogen bonds between D(2)O molecules become partially weakened. With regard to the CD(4) molecules, there were high-density sites for the D atom of CD(4), and the density distribution of the C and D atoms was observed separately in the scattering amplitude density image. Consequently, the C-D bonds of CD(4) were not observed clearly because the CD(4) molecules had an orientational disorder. The D atoms of CD(4) were displaced from the line between the C and O atoms, and were located near the face center of the polygon in the cage. Accordingly, the D atoms of CD(4) were not bonded to specific O atoms. This result is consistent with the hydrophobicity of the CD(4) molecule. We also report the difference between the small and the large cages in the density distribution map and the temperature dependence of the scattering amplitude density.

Journal Article↗
PubMed2001

Disordered crystal structure of pentamethylcyclopentadienylsodium as seen by high-resolution X-ray powder diffraction.

The crystal structure of pentamethylcyclopentadienylsodium, [NaC10H15] (NaCp*), has been determined from high-resolution X-ray powder diffraction. The compound crystallizes in space group Cmcm with lattice parameters a = 4.61030 (3), b = 16.4621 (3), c = 14.6751 (2) A, V = 1113.77 (4) A(3) (Z = 4). NaCp* forms polymeric multidecker chains along the a axis. The Rietveld refinement (R(p) = 0.050 and R(F) = 0.163) shows that the Cp* moieties occupy, with disorder, two different orientations rotated away from the eclipsed conformation by +/-13.8 degrees.

Journal Article↗
PubMed1998

Structural studies of endohedral metallofullerenes by synchrotron radiation powder diffraction.

The endohedral natures of the metallofullerenes Y@C(82) and Sc(2)@C(8)4 are described based on synchrotron radiation powder diffraction experiments. For structural analysis, a combination of the maximum-entropy method (MEM) and Rietveld refinement was employed to analyse the complicated powder pattern. The obtained MEM charge densities show a clear distinction of the endohedral natures of the mono- and dimetallofullerenes.

Journal Article↗
PubMed2006

High-resolution powder diffraction study of purple membrane with a large Guinier-type camera.

X-ray diffraction patterns from a film of oriented purple membranes, which comprise two-dimensional crystals of bacteriorhodopsin (BR) trimers, were recorded with a 1 m-pathlength Guinier-type camera at SPring-8 BL40B2. A well focused X-ray beam and a camera with a high angular resolution of 0.024 degrees enabled a powder diffraction profile with very sharp and well separated peaks to be obtained up to a resolution of 2.3 A. Using integrated diffraction intensities up to a Bragg spacing of 4.2 A, a cluster of bulky amino acid residues and the head group of the BR chromophore are apparent in the electron density map projected along the membrane normal. Thus, a combination of synchrotron X-rays and large Guinier camera can be used for analyzing the conformational changes of BR in the intact state. In addition, the method might be extended to the structural analysis of film materials composed of two-dimensional arrays of nanoparticles.

Equipment Design↗
PubMed1995

Long Horizontal Parallel Slits with 0.03 degrees Angular Resolution for Powder Diffraction Using Synchrotron Radiation.

Long horizontal parallel slits with angular apertures of 0.032 and 0.065 degrees were constructed for powder diffraction experiments with synchrotron radiation. They have been tested at the BL-4B experimental station at the Photon Factory by using a monochromated beam with a wavelength of 1.528 A. The horizontal parallel slits with the smaller aperture gave a full-width at half-maximum of 0.030 (1) degrees for the (200) reflection from CeO(2) and an intensity about one order of magnitude higher than that obtained with a receiving slit in the same angular resolution, demonstrating the finest horizontal parallel slits developed so far. The misalignment of the horizontal parallel slits does not affect the intensity whilst it shifts the Bragg-peak positions systematically.

Journal Article↗
PubMedDate not supplied

X-ray powder diffraction data for selected drugs: furosemide, hydrochlorothiazide, naproxen, naproxen sodium, propranolol hydrochloride, and the halopheniramine maleates.

X-ray powder diffraction data for 9 commonly used drug substances are reported. The data for furosemide, hydrochlorothiazide, propranolol hydrochloride, dexchlorpheniramine maleate, and brompheniramine maleate have been indexed by reference to published crystal structure data. The racemic modifications of propranolol hydrochloride and brompheniramine maleate are shown to exist as racemic compounds rather than racemic mixtures.

Chlorpheniramine↗
PubMed2005

Electron paramagnetic resonance, scanning electron microscopy with energy dispersion X-ray spectrometry, X-ray powder diffraction, and NMR characterization of iron-rich fired clays.

The aim of this study is to clarify the structure of an iron-rich clay and the structural changes involved in the firing process as a preliminary step to get information on ancient ceramic technology. To this purpose, illite-rich clay samples fired at different temperatures were characterized using a multitechnique approach, i.e., by electron paramagnetic resonance, scanning electron microscopy with electron dispersion X-ray spectrometry, X-ray powder diffraction, magic angle spinning and multiple quantum magic angle spinning NMR. During firing, four main reaction processes occur: dehydration, dehydroxylation, structural breakdown, and recrystallization. When the results are combined from all characterization methods, the following conclusions could be obtained. Interlayer H2O is located close to aluminum in octahedral sites and is driven off at temperatures lower than 600 degrees C. Between 600 and 700 degrees C dehydroxylation occurs whereas, between 800 and 900 degrees C, the aluminum in octahedral sites disappears, due to the breakdown of the illite structure, and all iron present is oxidized to Fe3+. In samples fired at 1000 and 1100 degrees C iron clustering was observed as well as large single crystals of iron with the occurrence of ferro- or ferrimagnetic effects. Below 900 degrees C the aluminum in octahedral sites presents a continuous distribution of chemical shift, suggesting the presence of slightly distorted sites. Finally, over the whole temperature range, the presence of at least two tetrahedral aluminum sites was revealed, characterized by different values of the quadrupolar coupling constant.

Aluminum Silicates↗