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At least 91 records · Page 5Linked to original sources

Genera of the human lineage.

Human fossils dated between 3.5 and nearly 7 million years old discovered during the last 8 years have been assigned to as many as four new genera of the family Hominidae: Ardipithecus, Orrorin, Kenyanthropus, and Sahelanthropus. These specimens are described as having morphological traits that justify placing them in the family Hominidae while creating a new genus for the classification of each. The discovery of these fossils pushed backward by >2 million years the date of the oldest hominids known. Only two or three hominid genera, Australopithecus, Paranthropus, and Homo, had been previously accepted, with Paranthropus considered a subgenus of Australopithecus by some authors. Two questions arise from the classification of the newly discovered fossils: (i) Should each one of these specimens be placed in the family Hominidae? (ii) Are these specimens sufficiently distinct to justify the creation of four new genera? The answers depend, in turn, on the concepts of what is a hominid and how the genus category is defined. These specimens seem to possess a sufficient number of morphological traits to be placed in the Hominidae. However, the nature of the morphological evidence and the adaptation-rooted concept of what a genus is do not justify the establishment of four new genera. We propose a classification that includes four well defined genera: Praeanthropus, Ardipithecus, Australopithecus, and Homo, plus one tentative incertae sedis genus: Sahelanthropus.

Animals↗

[Study on diversity of actinomycetes under salt and alkaline environments].

Actinomycetes have been attached a great attention owing to these microorganisms product various natural compounds and have special mechanism of adapting extreme environments. But the research work on actinomycetes under extreme environments is few. Soil and sediment samples were collected from saline and alkaline soil and lakes in Xinjiang, Qinghai Province, P. R. China and Egypt. Diversity and some biological characteristics of Actinomycete were studied by using cultivation and DGGE methods. Results showed that large amount of unknown microorganisms exist in the salt lake Chaka, isolated strains account for only a small portion of species diversity. Designing new strategies for isolation of as yet uncultured microorganisms from natural extreme environments is the key step to exploit microbial resources. The 87% of alkalophilic or alkalinetolerant actinomycete strains were able to grow at pH 6.0 - 12.0. 14 strains grow well at pH 8.5 - 11.5, but not at pH 7.0. 34 halotolerant actinomycete cab grow in 15% - 20% NaCl. Based on the study of the halophilic and halotolerant actinomycetes isolated from the saline and the alkaline soils collected from Xinjiang and Qinghai Province, China, we can conclude that the relationship of actinomycetes (especially halophilic actinomycetes strains) to positive ions such as Na+, K+ and Mg2+ is very complex, and there were sodiumphilic, kaliumphilic, magnesiumphilic, and calciumphilici actinomycete strains. One new family, eight new genera and more than 30 new species of halophilic and alkalophilic actinomycetes were fund. Many strains with PKS genes were selected. We believe based on the research results that there is a very high density of new or unknown actinomycete resources in these areas in China and Egypt.

Actinobacteria↗

Ballistosporous yeasts found on the surface of plant materials collected in New Zealand. The genera Bensingtonia and Bullera with descriptions of five new species.

In the present study, strains from the surface of plant materials collected in New Zealand that belong to the genera Bensingtonia and Bullera are classified. One strain of Bensingtonia was assigned to Ben. ingoldii, while the remaining strain was assigned to Ben. naganoensis based on DNA-DNA reassociation experiment. Twenty-one of 28 Bullera strains were assigned to B. alba (11 strains), B. crocea (6 strains) and B. variabilis (4 strains). The remaining seven strains could not be assigned to any previously known species and were described as the new species, B. coprosmaensis (1 strain), B. hannae (1 strain), B. huiaensis (1 strain), B. mrakii (3 strains) and B. unica (1 strain).

Base Composition↗

Culturable marine actinomycete diversity from tropical Pacific Ocean sediments.

Actinomycetes were cultivated using a variety of media and selective isolation techniques from 275 marine samples collected around the island of Guam. In total, 6425 actinomycete colonies were observed and 983 (15%) of these, representing the range of morphological diversity observed from each sample, were obtained in pure culture. The majority of the strains isolated (58%) required seawater for growth indicating a high degree of marine adaptation. The dominant actinomycete recovered (568 strains) belonged to the seawater-requiring marine taxon 'Salinospora', a new genus within the family Micromonosporaceae. A formal description of this taxon has been accepted for publication (Maldonado et al., 2005) and includes a revision of the generic epithet to Salinispora gen. nov. Members of two major new clades related to Streptomyces spp., tentatively called MAR2 and MAR3, were cultivated and appear to represent new genera within the Streptomycetaceae. In total, five new marine phylotypes, including two within the Thermomonosporaceae that appear to represent new taxa, were obtained in culture. These results support the existence of taxonomically diverse populations of phylogenetically distinct actinomycetes residing in the marine environment. These bacteria can be readily cultured using low nutrient media and represent an unexplored resource for pharmaceutical drug discovery.

Actinomycetales↗

Coral disease dynamics in the central Philippines.

Limited quantitative research has been conducted on coral disease in the Philippines and baseline data are much needed. Field surveys for prevalence and distribution patterns were conducted from November 2002 to August 2003. Sites included the islands of Negros, Cebu, Siquijor, Panglao, Olango, Sumilon, Bantayan, Pescador, Balicassag and Palawan. In 154 belt transects, 10 026 Porites colonies were examined at 28 sites covering 3080 m2. Two syndromes, Porites ulcerative white spot (PUWS) and coral tumors, occurred at high prevalence. Tumors as high as 39.1% occurred among massive Porites, and PUWS was as high as 53.7% among massive and branching Porites. In 8 mo, 116 tagged colonies showed slow progression and low mortality. Along a 41 km human impact gradient centered on Dumaguete City (Negros), 15 sites were examined. Correlation analyses linked higher disease prevalence to anthropogenic influence (Spearman's rank correlation coefficient [r(s)] = -0.54, p = 0.04 for tumors and r(s) = -0.69, p = 0.005 for PUWS). In most sites disease prevalence was lower than in the sites near Dumaguete. High PUWS prevalence near uninhabited Sumilon Island appeared to be linked to the highly diseased reefs near Dumaguete City due to transmission of disease along a cross-shelf front formed between the Tañon Strait and Bohol Sea. Other observations included 12 potential new host species for PUWS (4 new genera and 1 octocorallia) and 5 likely new hosts for black band disease (BBD) in the Philippines, and a relatively high prevalence (7.8%) of BBD in 1 site in western Palawan.

Animals↗

Vendian microfossils in metasedimentary cherts of the Scotia Group, Prins Karls Forland, Svalbard.

Sedimentary rocks of the Scotia Group, Prins Karls Forland, Svalbard, have been metamorphosed to lower greenschist facies. Yet Scotia chert nodules contain abundant organic-walled microfossils belonging to at least seventeen taxa. Their black colour indicates that the fossils underwent substantial thermal alteration. However, it is suggested that preservation in a matrix of early diagenetic silica shielded them from the most destructive mechanical and chemical effects of metamorphism. Microbial mats and large acanthomorphic acritarchs suggest a coastal marine depositional environment; the acritarchs further indicate an early Vendian age for the sediments. The Scotia fossils bear a close resemblance to assemblages described from the Doushantuo Formation, China and elsewhere, demonstrating the broad geographical distribution of biostratigraphically important Vendian taxa. Briareus and Echinosphaeridium are described as new genera; Briareus borealis is described as a new species, while Echinosphaeridium maximum is proposed as a new combination.

Cyanobacteria↗

Characterization of N2O-producing Xanthomonas-like isolates from biofilters as Stenotrophomonas nitritireducens sp. nov., Luteimonas mephitis gen. nov., sp. nov. and Pseudoxanthomonas broegbernensis gen. nov., sp. nov.

A group of yellow-pigmented isolates from ammonia-supplied biofilters showed an unusual denitrification reaction. All strains reduced nitrite but not nitrate without production of nitrogen (N2). The only product found was nitrous oxide (N2O). The strains were divided into two clusters and one separate strain by their fatty acid profiles, which were similar to the fatty acid profiles of the genera Xanthomonas and Stenotrophomonas. Analyses of the 165 rDNA sequences showed that these clusters and the separate strain form three independent lines within the Xanthomonas branch of the Proteobacteria. The evolutionary distances of the isolates to members of the related genera Xanthomonas, Stenotrophomonas and Xylella calculated by the 16S rDNA sequences led to the proposal of two new genera and three new species, Stenotrophomonas nitritireducens sp. nov., Luteimonas mephitis gen. nov., sp. nov. and Pseudoxanthomonas broegbernensis gen. nov., sp. nov. The type strains are Stenotrophomonas nitritireducens L2T (= DSM 12575T), Luteimonas mephitis B1953/27.1T (= DSM 12574T) and Pseudoxanthomonas broegbernensis B1616/1T (= DSM 12573T).

DNA, Bacterial↗

Introduction to Physidae (Gastropoda: Hygrophila); biogeography, classification, morphology.

Physidae, a world-wide family of freshwater snails with about 80 species, are reclassified by progressive characters of the penial complex (the terminal male reproductive system): form and composition of penial sheath and preputium, proportions and structure of penis, presence or absence of penial stylet, site of pore of penial canal, and number and insertions of penial retractor muscles. Observation of these characters, many not recognized previously, has been possible only by the technique used in anesthetizing, fixing, and preserving. These progressive characters are the principal basis of 23 genera, four grades and four clades within the family. The two established subfamilies are divided into seven new tribes including 11 new genera, with diagnoses and lists of species referred to each. Proposed as new are: in Aplexinae, Austrinautini, with Austrinauta g.n. and Caribnautu harryi g.n., nom.nov.; Aplexini; Amecanautini with Amecanauta jaliscoensis g.n., sp.n., Mexinauta g.n., and Mayabina g.n., with M. petenensis, polita, sanctijohannis, tempisquensis spp.nn., Tropinauta sinusdulcensis g.n., sp.n.; and Stenophysini, with Stenophysa spathidophallus sp.n.; in Physinae, Haitiini, with Haitia moreleti sp.n.; Physini, with Laurentiphysa chippevarum g.n., sp.n., Physa mirollii nom.nou.; and Physellini, with Chiapaphysa g.n., and C. grijalvae, C. pacifica spp.nn., Utahphysa g.n., Archiphysa g.n., with A. ashmuni, A. sonomae spp.nn., Physella hemphilli sp.n., and Ultraphysella sinaloae g.n., sp.n. The simplest reproductive system is found in Austrinauta of the Aplexinae; its penial complex approaches that in the related family Lymnaeidae. Within Physinae a close approximation is found in Haitia. By these two genera the two subfamilies are drawn close together. Four grades of progressive complexity are recognized: (I) penial sheath entirely muscular; (II) penial sheath with both glandular and muscular tissue; (III) penis with penial stylet or other specialization of the tip of the penis; and (IV) pore of penial canal lateral rather than terminal as in the lower grades. In both subfamilies there are clades with glandular tissue in the penial sheath, a penial sheath subdivided into two parts, and tip of penis specialized in various ways. These clades are formalized as new tribes. Of 23 genera of Physidae, 17 occur in Pacific drainages of North and Central America, eight of these restricted to the region. Concentration of primitive genera along the Pacific coast from Mexico to Costa Rica conforms to previous observations that primitive pulmonate families are concentrated within, or along the continental margins of, the Pacific Ocean. An ancestral origin of Physidae along an ancient eastern Pacific coast is probable. From this region the several lineages have spread north, south and east in the Americas, and through Siberia to Europe. Although Physinae have fewer genera than Aplexinae (11 v. 12), they have more species (47 v. 34). Greater land area in the temperate zone has provided more opportunity for speciation of Physinae, in contrast to the generally tropical and warm-temperate range of Aplexinae. Furthermore, 10 species of Physinae are localized in individual lakes, whereas Aplexinae are not lake-dwellers. Both well-developed egg strings and capsular strings are found in the spawn of Sibirenauta elongatus. These structures have been known in Lymnaeidae, but not hitherto in Physidae; they are a link with some marine groups, such as Siphonariidae. Spiral color bands and white streaks in the shell of Mexinauta recall those in Lancidae (Lymnaeacea), whereas the radula of Physidae is like that of Chilinidae. Physidae thus show affinities to various basal stocks of aquatic pulmonates; no clear-cut sister-group can be recognized. Most species have a restricted range; out of 55 with sufficiently detailed information for analysis, 25 are limited to a single 1 degrees x 1 degrees quadrangle. Only a few species are widespread, on one or even two continents. Accordingly, more species of Physidae are threatened by habitat destruction than in other families of Hygrophila with generally wider distributions. Other features are a key to genera; catalog of more than 430 names applied to living Physidae, with original reference, type locality, and location of type specimens; summary of museums with types; and glossary.

Animals↗

Taxonomy--General comments and update on taxonomy of Clostridia and Anaerobic cocci.

Since such things as sites of normal carriage, type and severity of infections produced, and antimicrobial susceptibility patterns may vary according to the particular species involved, accurate taxonomy for differentiation of species is important. For example, reclassification of the 'Bacteroides gracilis group' revealed that Sutterella wadsworthensis is actually responsible for the antimicrobial resistance seen in that group. With clostridia and anaerobic cocci, as with other taxa, there have been a number of recent changes in classification of existing taxa as well as description of novel taxa. It is important that both clinicians and microbiologists adapt quickly to new classification schemes and new taxa as soon as they are validated. For example, Peptostreptococcus is now restricted to the species P. anaerobius and five new genera have been created. There has also been significant reclassification of clostridia and new species of clostridia have also been described.

Journal Article↗

Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia.

Several orange- and yellow-pigmented, halophilic, strictly aerobic, chemoheterotrophic, Gram-negative strains were isolated during investigations of maritime Antarctic habitats, including coastal fast sea-ice brine and algae, crustaceans and quartz stone sublithic cyanobacterial biofilms. Isolates investigated in this study belonged to the marine clade of the family Flavobacteriaceae and represented lineages that were either distinct from species with validly published names or appeared to be distinct species within existing genera. A polyphasic taxonomic analysis demonstrated the novelty of these strains, and several new taxa are proposed. Strains from quartz stone sublithic communities were grouped into two new genera designated Subsaximicrobium gen. nov. and Subsaxibacter gen. nov. The genus Subsaximicrobium included the species Subsaximicrobium wynnwilliamsii sp. nov. (type species; type strain G#7(T)=ACAM 1070(T)=CIP 108525(T)) and Subsaximicrobium saxinquilinus sp. nov. (type strain Y4-5(T)=ACAM 1063(T)=CIP 108526(T)). The genus Subsaxibacter contained a single species designated Subsaxibacter broadyi sp. nov. (type strain P7(T)=ACAM 1064(T)=CIP 108527(T)). A novel bacterial strain isolated from the lake-dwelling, calanoid copepod Paralabidocera antarctica was given the name Lacinutrix copepodicola gen. nov., sp. nov. (type strain DJ3(T)=ACAM 1055(T)=CIP 108538(T)). Four novel species of the genus Bizionia were discovered, Bizionia algoritergicola sp. nov. (type strain APA-1(T)=ACAM 1056(T)=CIP 108533(T)) and Bizionia myxarmorum sp. nov. (type strain ADA-4(T)=ACAM 1058(T)=CIP 108535(T)), which were isolated from the carapace surfaces of sea-ice algae-feeding amphipods, and Bizionia gelidisalsuginis sp. nov. (type strain IC164(T)=ACAM 1057(T)=CIP 108536(T)) and Bizionia saleffrena sp. nov. (type strain HFD(T)=ACAM 1059(T)=CIP 108534(T)), which were isolated from sea-ice brines. Several other novel species were also isolated from sea-ice samples, including two novel species of the genus Gelidibacter, Gelidibacter gilvus sp. nov. (type strain IC158(T)=ACAM 1054(T)=CIP 108531(T)) and Gelidibacter salicanalis sp. nov. (type strain IC162(T)=ACAM 1053(T)=CIP 108532(T)), as well as three novel species of the genus Gillisia, Gillisia illustrilutea sp. nov. (type strain IC157(T)=ACAM 1062(T)=CIP 108530(T)), Gillisia sandarakina sp. nov. (type strain IC148(T)=ACAM 1060(T)=CIP 108529(T)) and Gillisia hiemivivida sp. nov. (type strain IC154(T)=ACAM 1061(T)=CIP 108528(T)).

Amphipoda↗

Metazoan parasites of the red rockfish Sebastes capensis off northern Chile.

The parasites of the red rockfish Sebastes capensis off northern Chile are described quantitatively for the first time and compared with those of congeneric species of the Northern Hemisphere as well as of other Chilean marine fishes. Sixteen species were recorded, including 8 ectoparasites (2 copepods, 2 isopods, 1 turbellarian, and 3 monogeneans) and 8 endoparasites (2 acanthocephalans, 3 digeneans, and 3 nematodes). The ectoparasites Lepeophtheirus chilensis and Caligus cheilodactylus, and the endoparasites Pseudopecoelus sp. and Corynosoma sp. were predominant. Eighty percent of the fishes harbored 3-6 parasite species. Four parasite genera new to the genus Sebastes were found in S. capensis, which also shares several parasite genera with its congeneric species from other geographic areas. However, in contrast to its congeners, S. capensis exhibits a lower helminth species richness, although when all the metazoan fauna is considered the species number and diversity are similar. When compared with other demersal fishes of the Chilean coast, S. capensis shows a high number of species and high parasite abundance. Diphtherostomum sp. and Gnathia sp. are new generic records for the parasite fauna of Chilean coast fishes and the finding of Paramicrocotyle sp., Neobenedenia melleni, and Interniloculus chilensis in this study represents a new geographical record for these parasites.

Acanthocephala↗

Progress in taxonomy of the Apicomplexan protozoa.

In 1987, 4516 species and 339 genera of the phylum Apicomplexa had been named. They consisted of the gregarines (subclass Gregarinasida) (1624 named species and 231 named genera), the hemogregarines (family Haemogregarinidae) (399 species and 4 genera), the eimeriorins (order Eimeriorida) (1771 species and 43 genera), the hemospororids (order Haemospororida) (444 species and 9 genera), the piroplasmids (order Piroplasmorida) (173 species and 20 genera), and a few others (105 species and 32 genera). The first apicomplexan protozoon was seen by Antony van Leeuwenhoek; in 1674 he saw oocysts of Eimeria stiedai in the gall bladder of a rabbit. The first member of the phylum to be named (by Dufour in 1828) was Gregarina ovata in earwigs. During the quarter century 1826-1850, 41 species and 6 genera of Apicomplexa were named. These numbers increased progressively. In the quarter century 1951-1975, 1873 new species and 83 new genera were named. Data are given for the numbers of named species and genera of apicomplexan protozoa of each group known in 1850, 1875, 1900, 1925, 1950, 1975, and 1987.

Animals↗

Ubiquity and diversity of dissimilatory (per)chlorate-reducing bacteria.

Environmental contamination with compounds containing oxyanions of chlorine, such as perchlorate or chlorate [(per)chlorate] or chlorine dioxide, has been a constantly growing problem over the last 100 years. Although the fact that microbes reduce these compounds has been recognized for more than 50 years, only six organisms which can obtain energy for growth by this metabolic process have been described. As part of a study to investigate the diversity and ubiquity of microorganisms involved in the microbial reduction of (per)chlorate, we enumerated the (per)chlorate-reducing bacteria (ClRB) in very diverse environments, including pristine and hydrocarbon-contaminated soils, aquatic sediments, paper mill waste sludges, and farm animal waste lagoons. In all of the environments tested, the acetate-oxidizing ClRB represented a significant population, whose size ranged from 2.31 x 10(3) to 2.4 x 10(6) cells per g of sample. In addition, we isolated 13 ClRB from these environments. All of these organisms could grow anaerobically by coupling complete oxidation of acetate to reduction of (per)chlorate. Chloride was the sole end product of this reductive metabolism. All of the isolates could also use oxygen as a sole electron acceptor, and most, but not all, could use nitrate. The alternative electron donors included simple volatile fatty acids, such as propionate, butyrate, or valerate, as well as simple organic acids, such as lactate or pyruvate. Oxidized-minus-reduced difference spectra of washed whole-cell suspensions of the isolates had absorbance maxima close to 425, 525, and 550 nm, which are characteristic of type c cytochromes. In addition, washed cell suspensions of all of the ClRB isolates could dismutate chlorite, an intermediate in the reductive metabolism of (per)chlorate, into chloride and molecular oxygen. Chlorite dismutation was a result of the activity of a single enzyme which in pure form had a specific activity of approximately 1,928 micromol of chlorite per mg of protein per min. Analyses of the 16S ribosomal DNA sequences of the organisms indicated that they all belonged to the alpha, beta, or gamma subclass of the Proteobacteria. Several were closely related to members of previously described genera that are not recognized for the ability to reduce (per)chlorate, such as the genera Pseudomonas and Azospirllum. However, many were not closely related to any previously described organism and represented new genera within the Proteobacteria. The results of this study significantly increase the limited number of microbial isolates that are known to be capable of dissimilatory (per)chlorate reduction and demonstrate the hitherto unrecognized phylogenetic diversity and ubiquity of the microorganisms that exhibit this type of metabolism.

Anaerobiosis↗

Neospora caninum is an invalid species name: an evaluation of facts and statements.

An evaluation of both the formal requirements of the International Rules of Zoological Nomenclature and the scientific reasons for the description of new genera and species shows that the name Neospora caninum is a nomen nudum. The only characteristic criteria for discriminating between the previously described species Hammondia heydorni and the proposed new species N. caninum (i.e. the lack of a parasitophorous vacuole) has been shown to be wrong in many publications. Furthermore, absolutely no criteria were presented as to why a new genus (i.e. Neospora) should be established besides the already existing genera Hammondia, Toxoplasma and Isospora. In addition, recent transmission experiments show that an oocyst isolate (from the faeces of dogs) is morphologically indistinguishable from H. heydorni [synonymous with Isospora bigemina - small form, Isospora heydorni (Tadros and Laarman 1976) and H. heydorni (Tadros and Laarman 1976) Dubey 1977] and is almost identical with respect to molecular biological features with the NC-1 strain of N. caninum.

Animals↗

Fine structure of trophozoites and cysts of the pathogenic diplomonad Spironucleus muris.

Using light and electron microscopy, we studied the ultrastructure of Spironucleus muris (syn. Hexamita muris) from spontaneously and experimentally infected normal and athymic mice. Kinetosomes and cytoskeletal fibers arranged in two-fold rotational symmetry are similar to the species Spironucleus elegans from amphibians. Taxonomic proposals and a possible evolutionary scheme for diplomonad genera accepted at the last International Congress of Parasitology are given. The genus Hexamita should be divided into two new genera: Hexamita (usually free-living) and Spironucleus (exclusively parasitic). We consider previous descriptions of hexamitiasis in rodents as dealing with spironucleosis. We distinguish a fresh and an old cyst of the parasite on the basis of structure, light refraction, location in the host, and infectivity. The transition from a fresh to an old cyst parallels the dessication of feces. The trophozoites can damage the microvilli and penetrate into the epithelium. We explain the differences in findings concerning intestinal lesions and forms of the disease (from acute to chronic to latent) by differences in the virulence of different parasite strains and by differences in inherent host resistance.

Animals↗

Culturable phylogenetic diversity of the phylum 'Bacteroidetes' from river epilithon and coastal water and description of novel members of the family Flavobacteriaceae: Epilithonimonas tenax gen. nov., sp. nov. and Persicivirga xylanidelens gen. nov., sp. nov.

Members of the phylum 'Bacteroidetes' are important heterotrophs involved in cycling organic carbon in aquatic habitats. Their diversity has been studied by molecular methods in both freshwater and marine habitats and many novel genera and species within this phylum have been characterized in recent years. In this study, we examined the diversity of members of the 'Bacteroidetes' that could be readily isolated on solid media from river epilithon and coastal sea water. Most (93 %) of the 55 isolates confirmed as members of the 'Bacteroidetes' and examined by phylogenetic analysis of 16S rRNA gene sequences belonged to the Flavobacteriaceae. Furthermore, most (62 %) of these were almost certainly members of the genus Flavobacterium and all but one were from river epilithon. Conversely, the sea-water isolates were more widely distributed in clades containing other genera. Some of the isolates were deep-branching within phylogenetic trees and so could not be assigned to putative genera. Two of these deep-branching isolates were characterized by polyphasic taxonomy and are proposed as novel species within two new genera of the family Flavobacteriaceae. These are Epilithonimonas tenax gen. nov., sp. nov. (type strain EP105T = NCIMB 14026T = DSM 16811T) and Persicivirga xylanidelens gen. nov., sp. nov. (type strain SW256T = NCIMB 14027T = DSM 16809T).

Atlantic Ocean↗

A multilocus phylogeny of New World jay genera.

We studied phylogenetic relationships of the New World Jays (NWJs) based on DNA sequences from three mitochondrial and two nuclear loci. Sampling included at least two individuals from each of the seven NWJ genera and four outgroups of closely related corvids, as well as six of the 16 Cyanocorax species (including two representatives of the previously recognized "Cissilopha"). Phylogenetic analyses were conducted using maximum parsimony, maximum likelihood, and Bayesian analyses for individual genes and a combined dataset. The combined phylogenetic analysis supports the basal position of Cyanolyca to all other NWJs, a (Cyanocorax (Calocitta, Psilorhinus)) clade, and a ((Cyanocitta, Aphelocoma) Gymnorhinus) clade that agrees with a novel morphological synapomorphy uniting Cyanocitta and Aphelocoma. Within Cyanocorax, C. yncas (former "Xanthoura") is basal to a split among former "Cyssilopha" species and the rest of the Cyanocorax species. To explore implications for the historical biogeography of the NJWs, we used Dispersal-Vicariance Analysis, which indicated that NWJs originated either in Mesoamerica or North America+Mesoamerica, with South American NWJs dispersing three times independently from Mesoamerica.

Adenylate Kinase↗

[Study on biodiversity of type I & II polyketide synthesis genes positive microorganisms].

Some soil samples were collected from different places in Yunnan Provinces, China. 876 bacteria or actinomycete strains were isolated using Glucose-Peptone-Yeast extract agar, Starch-Casein agar and Glycerol-Asparagine agar with these soil samples, of which about 100 strains belong to genus Streptomyces and the others belong to rare actinomycetes or bacteria. With polyketide synthesis gene screening, 75 strains were picked up as type I & II polyketide synthesis gene positive strains. Then 10 strains were chosen for 16S rDNA amplification and systematic analysis based on comparing results with their anti-bacteria activity, morphology, and physiological characteristics analysis. They were classified to be at least 7 families and 8 genera, such as genus Streptomyces of the family Streptomycetaceae, two genera Streptosporangium and Nonomuraea of the family Streptosporangiaceae, genus Mycobacterium of the family Mycobacteriaceae, genus Nocardia of the family Nocardiaceae, genus Achromobacter of the family, another two strains belong to the suborder Micrococcineae and the family Oxalobacteraceae', respectively. Eight of them were classified into six potential novel species and two new genera with polyphasic taxonomic methods. The results showed that designing new strategies for isolation and identification of microorganisms from natural environments was the key step to exploit microbial resources.

Actinobacteria↗