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PubMed2005

The C-value enigma in plants and animals: a review of parallels and an appeal for partnership.

AIMS: Plants and animals represent the first two kingdoms recognized, and remain the two best-studied groups in terms of nuclear DNA content variation. Unfortunately, the traditional chasm between botanists and zoologists has done much to prevent an integrated approach to resolving the C-value enigma, the long-standing puzzle surrounding the evolution of genome size. This grand division is both unnecessary and counterproductive, and the present review aims to illustrate the numerous links between the patterns and processes found in plants and animals so that a stronger unity can be developed in the future. SCOPE: This review discusses the numerous parallels that exist in genome size evolution between plants and animals, including (i) the construction of large databases, (ii) the patterns of DNA content variation among taxa, (iii) the cytological, morphological, physiological and evolutionary impacts of genome size, (iv) the mechanisms by which genomes change in size, and (v) the development of new methodologies for estimating DNA contents. CONCLUSIONS: The fundamental questions of the C-value enigma clearly transcend taxonomic boundaries, and increased communication is therefore urged among those who study genome size evolution, whether in plants, animals or other organisms.

Animals↗
PubMed2002

An increase in unsaturation of fatty acids in phosphatidylglycerol from leaves improves the rates of photosynthesis and growth at low temperatures in transgenic rice seedlings.

The level of cis-unsaturated fatty acids in phosphatidylglycerol (PG) from rice leaves was genetically altered from 19.3% in the wild-type to 29.4 and 32.0% in T1 plants segregated with cDNAs for glycerol-3-phosphate acyltransferase of chloroplasts (GPAT; EC 2.3.1.15) from Arabidopsis (+AGPAT plant) and spinach (+SGPAT plant), respectively; and to 21.4% in a non-transformant segregated from +SGPAT plants (-SGPAT plant). In all these plants, O2 evolution from leaves was similar at 25 degrees C and was impaired to a similar extent at 5 and 11 degrees C. However, in parallel with the levels of cis-unsaturated fatty acids in PG, +AGPAT and +SGPAT plants showed less impaired rates of O(2) evolution from leaves than the wild-type and -SGPAT plants at 14 and 17 degrees C. In agreement with this, the fresh weight of 14-day-old seedlings increased to 571 + or - 18, 591 + or - 23, 687 + or - 32 and 705 + or - 31 mg in the wild-type, -SGPAT, +AGPAT and +SGPAT plants, respectively, after 6 weeks at 17/14 degrees C (day/night). These results demonstrate the practical importance of the present technology with GPAT in improvement of the chilling sensitivity of crops.

Arabidopsis↗
PubMed1993

The evolution of chemoreception in squamate reptiles: a phylogenetic approach.

Recent advances in the field of squamate reptile chemoreception have been paralleled by the growth and preeminence of cladistics in the field of systematics, but for the most part, workers in the former have failed to incorporate the conceptual and informational advances of the latter. In this paper, I attempt a preliminary rapprochement by combining the methods of phylogenetic systematics and current hypotheses of squamate relationships with an overview of squamate chemosensory biology. This purely phylogenetic approach leads to a number of falsifiable generalizations about the evolution of chemoreception in squamates: 1) Evolution of this system is conservative rather than plastic, reflecting to a large extent suprafamilial attributes rather than adaptation to local conditions; 2) Anguimorphs are highly chemosensory and teiids show convergence with this group; 3) Tongue-flicking, a bifurcated tongue tip, a vomeronasal (VNO) mushroom body, and a complete circular muscle system in the tongue are a correlated character complex associated with the attainment, in squamates, of a direct VNO-oral connection and the loss of a VNO-nasal connection; 4) There is little support for a visual-chemosensory dichotomy within Squamata; 5) Gekkotans are allied with Autarchoglossa, both phylogenetically and in terms of chemosensory biology; 6) Iguania are highly variable in chemosensory development; iguanids represent the primitive iguanian condition, while agamids and chamaeleonids have secondarily reduced or lost their chemosensory abilities; 7) Apparent contradictions in chemosensory behavior among iguanids probably represent intrafamilial divergence; 8) Ecological correlates within Iguanidae and other taxa might be spurious, resulting from historical factors unrelated to the adaptations in question; 9) The mechanical demands of lingual food prehension have constrained chemosensory evolution in Iguania; chemosensory evolution within Scleroglossa was permitted by the liberation of the tongue from this ancestral role.

Amphibians↗
PubMed2001

The massively parallel genetic algorithm for RNA folding: MIMD implementation and population variation.

A massively parallel Genetic Algorithm (GA) has been applied to RNA sequence folding on three different computer architectures. The GA, an evolution-like algorithm that is applied to a large population of RNA structures based on a pool of helical stems derived from an RNA sequence, evolves this population in parallel. The algorithm was originally designed and developed for a 16384 processor SIMD (Single Instruction Multiple Data) MasPar MP-2. More recently it has been adapted to a 64 processor MIMD (Multiple Instruction Multiple Data) SGI ORIGIN 2000, and a 512 processor MIMD CRAY T3E. The MIMD version of the algorithm raises issues concerning RNA structure data-layout and processor communication. In addition, the effects of population variation on the predicted results are discussed. Also presented are the scaling properties of the algorithm from the perspective of the number of physical processors utilized and the number of virtual processors (RNA structures) operated upon.

Algorithms↗
PubMed1985

Age related evolution of stable collagen reticulation in human skin.

The relaxation time of hydrothermal isometric tensions (HIT) was measured in different tissues during collagen hydrolysis. This hydrolysis was shown to have the same activation energy in all skin samples studied, whatever the species and age. Therefore, variations in the HIT relaxation half-time at the boiling point, exclusively reflected variations in the reticulation degree of the stable infinite network of denatured collagen. Stable collagen reticulation was studied in human skin from birth to 70 yrs of age in 113 biopsies, by measuring the relaxation half-time of hydrothermal isometric tension (HIT) at boiling point. This time was observed to vary in three different ways as a function of age: 1) from birth to eight or 10 yrs and from 14-15 yrs until adulthood, it increased constantly, and at the same rate; 2) during early puberty, the striking observation was the dramatic decrease of relaxation time value which remained low for 4-5 yrs thereafter, and 3) from adulthood to 70 yrs of age, relaxation time values were scattered along several plateaux, apparently separated by similar incremental steps. A parallel study on rat and pig skin showed a similar age-related evolution for collagen stable reticulation i.e., a sudden drop of reticulation at puberty, and low values for several months thereafter, followed by a linear increase, at the same rate as that observed for human skin. The study of collagen reticulation in various pathological situations may help to clarify and increase our understanding of the different mechanisms involved in collagen modifications during in vivo growth and aging.

Adolescent↗
PubMed2000

Microbial dynamics in an extractive membrane bioreactor exposed to an alternating sequence of organic compounds.

Wastewaters containing organic compounds have been treated using extractive membrane bioreactors (EMBs). During treatment, a biofilm normally develops on the surface of the membrane, on the biological side. This study investigates the dynamics of biofilm growth in an EMB exposed to an alternating sequence of organic compounds. Microbial dynamics of both suspended and attached cultures were investigated experimentally in a single-tube extractive membrane bioreactor (STEMB), which comprised a continuous stirred-tank bioreactor (CSTB) coupled to eight single-tube extractive membrane modules (STEMMs) via a recirculating biomedium. A model microbial culture consisting of a Burkholderia sp. strain JS150 (ATCC No. 51283), able to degrade monochlorobenzene, and a Xanthobacter autotrophicus sp. strain GJ10 (ATCC No. 43050), able to degrade 1, 2-dichloroethane, was used. Both microbial strains exhibited exclusive degradative capabilities. The CSTB was monitored by quantification of individual strains and by product and organic compound evolution. To investigate the biofilm growth dynamics, eight STEMMs were run in parallel with the same operating conditions. Every week, STEMMs were stopped for biofilm analysis and the organic compound in the wastewater was changed. Biofilm growth was investigated by quantification of individual strains, by evaluation of the overall biofilm growth, and by microscopic analysis. A biofilm composed of both strains was developed and maintained during the whole experiment in the STEMMs. The biofilm that developed on the membrane improved the response of the system to changes in the wastewater.

Biodegradation, Environmental↗
PubMed2005

Evolution of hand dysfunction and symptoms in untreated carpal tunnel syndrome.

The Italian Carpal Tunnel Syndrome (CTS) Study Group assessed the evolution of symptoms and hand dysfunction through validated, patient-oriented measures in 264 patients with 354 hands affected by untreated idiopathic CTS (follow-up 10-15 months). The evolution of symptoms and hand dysfunction was positively related. Only in 3% was there discordance between hand dysfunction and symptom evolution. Thus, in patients with CTS, hand dysfunction and symptoms evolve in parallel.

Carpal Tunnel Syndrome↗
PubMed2005

Vine-twining polymerization: a new preparation method for well-defined supramolecules composed of amylose and synthetic polymers.

In this article we describe a new method of polymerization called "vine-twining polymerization" for preparation of well-defined supramolecules, which are amylose-polymer inclusion complexes. The method was achieved by enzymatic polymerization of alpha-D-glucose-1-phosphate catalyzed by phosphorylase in the presence of various synthetic polymers such as polyethers, polyesters, poly(ester-ether), and amphiphilic block copolymer. Powder X-ray diffraction (XRD) and 1H-NMR measurements determined the structures of the products to be inclusion complexes. The XRD patterns were completely different from those of amylose and guest polymers. The 1H-NMR spectra of the products indicated that the structures were composed of amylose and guest polymers. The formation process of the inclusion complexes during the enzymatic polymerization was also evaluated. In addition, we revealed that the bulkiness of the end groups and the hydrophobicity of the guest polymers strongly affected the formation of the inclusion complexes. By means of this method of polymerization, a graft polymer having inclusion complexes as side chains was prepared. Furthermore, as an evolution of the "vine-twining polymerization," we attempted a system of parallel polymerization to form an inclusion complex of amylose with a strongly hydrophobic guest polymer.

Amylose↗
PubMed2001

Coparalogy: physical and functional clusterings in the human genome.

Two rounds of large-scale duplications are thought to have occurred in early vertebrate ancestry; this is now known as the "2R hypothesis." They have led to the constitution of subfamilies of paralogous genes. Chromosomal regions that contain present-day paralogs (paralogous regions or paralogons) have been identified in mammals. We show that sets of paralogons (PGs) can be assembled in a tentative "human genome paralogy map" that includes all autosomes and X. A total of 14 PGs, containing more than 1600 genes, were assembled in this paralogy map. Genes that belong to the same PG are coparalogs. We show that identification of coparalogy can be used (i) to broaden data on gene mapping, (ii) to identify physical gene clusters that derive from early cis-duplications, and (iii) to speculate on coevolution and coregulation of genes sharing a common structure or function (functional clusters). Thus, coparalogy analyses should parallel phylogenetic analyses and can help draw hypotheses on gene and genome evolution.

Chromosome Mapping↗
PubMed1981

A simulation study on Nei and Li's model for estimating DNA divergence from restriction enzyme maps.

A simulation study has been conducted to check the accuracy of Nei and Li's (1979) formulas for the mean and variance of the proportion (S) of identical restriction sites between two DNA sequences and for estimating the mean and variance of the number (delta) of base substitutions per nucleotide site between two DNA sequences. The results show that these formulas are quite accurate as long as the probability of S becoming zero is negligibly. In addition to the simulation, approximate formulas have also been obtained for the probability for S to become zero at time t and for the contribution to S due to parallel mutation.

Base Sequence↗
PubMed1992

Host dopaminergic afferents affect the development of DARPP-32 immunoreactivity in transplanted embryonic striatal neurons.

Homotopic transplantation provides an interesting way to observe the relationships between developing cells and ingrowing host afferents. We have performed a complete and selective elimination of the mesostriatal dopaminergic system in adult rats to observe the influence of its absence on the development and chemical differentiation of embryonic striatal cells. Cell suspensions from striatal primordia of 14-15-day-old embryos were transplanted into host striata that were (i) neuron-depleted by kainic acid (control group) or (ii) deprived of dopamine by 6-hydroxydopamine prior to the neuronal depletion by kainic acid (experimental group). The expression of dopamine- and adenosine 3',5'-monophosphate-regulated phosphoprotein (DARPP-32) by transplanted cells was observed in correlation with their innervation by host dopaminergic afferents which in turn were identified by tyrosine hydroxylase immunohistochemistry. Observations were made between four days and three months after transplantation. Four days after transplantation, no immunoreactivity for DARPP-32 was observed in transplants of control animals despite the presence of tyrosine hydroxylase-immunopositive fibers growing from the host to discrete cell clusters in the transplant. DARPP-32-labeled cells appeared soon afterwards. Six days after transplantation they displayed varying intensities of immunoreaction, ranging from just detectable to normal levels and were specifically targeted by developing tyrosine hydroxylase-immunopositive fibers. The number of DARPP-32-labeled cells increased rapidly and they formed increasingly compact clusters. Fourteen days after transplantation and afterwards, all the DARPP-32-labeled cells displayed an intensity of immunoreaction and a distribution comparable to that observed in long-term transplants. Transplants in the experimental hosts displayed the same organization and developmental features as the control transplants with the exception of DARPP-32 labeling which was not detected before eight days after transplantation. Ten days after transplantation, the distribution and intensity of DARPP-32 labeling was similar to that observed at six days in the control group. The evolution of DARPP-32 labeling after 10 days in the experimental group paralleled that observed six days post-transplantation and beyond in the control group. Dopaminergic mesostriatal host afferents are able to provide developing cells in grafted striatal tissues with normal innervation very rapidly. Despite this rapidity, the innervation does not seem to have any trophic influence on the general development of the transplant but does affect the onset time of the expression of neurochemical markers that are directly related to its synaptic function.(ABSTRACT TRUNCATED AT 400 WORDS)

Afferent Pathways↗
PubMed2002

Laboratory study of electro-coagulation-flotation for water treatment.

An electro-coagulation-flotation process has been developed for water treatment. This involved an electrolytic reactor with aluminium electrodes and a separation/flotation tank. The water to be treated passed through the reactor and was subjected to coagulation/flotation, by Al(III) ions dissolved from the electrodes, the resulting flocs floating after being captured by hydrogen gas bubbles generated at cathode surfaces. Apparent current efficiencies for Al dissolution as aqueous Al(III) species at pH 6.5 and 7.8 were greater than unity. This was due to additional reactions occurring in parallel with Al dissolution: oxygen reduction at anodes and cathodes, and hydrogen evolution at cathodes, resulting in net (i.e. oxidation + reduction) currents at both anodes and cathodes. The specific electrical energy consumption of the reactor for drinking water treatment was as low as 20 kWh (kg Al)(-1) for current densities of 10-20A m(-2). The water treatment performance of the electrocoagulation process was found to be superior to that of conventional coagulation with aluminium sulphate for treating a model-coloured water, with 20% more dissolved organic carbon (DOC) being removed for the same Al(III) dose. However, for a lowland surface water sample, the two processes achieved a similar performance for DOC and UV-absorbance removal. In addition, an up-flow electrocoagulator configuration performed better than a horizontal flow configuration, with both bipolar and monopolar electrodes.

Alum Compounds↗
PubMed2002

Do human bipeds use quadrupedal coordination?

Tackling the question of whether control of human gait is based on that of a quadrupedal locomotion system is of basic and practical relevance. During evolution, the increased influence of a direct cortical-motoneuronal system in parallel with more specialized hand function might have replaced phylogenetically older systems that organized locomotor movements. However, recent research indicates that interlimb coordination during human locomotion is organized in a similar way to that in the cat. Hence, it is hypothesized that during locomotion, corticospinal excitation of upper limb motoneurons is mediated indirectly, via propriospinal neurons in the cervical spinal cord. This allows a task-dependent neuronal linkage of cervical and thoraco-lumbar propriospinal circuits controlling leg and arm movements during human locomotor activities. The persistence of such movement control has consequences for rehabilitation and the applicability of animal research to human patients with spinal cord injury.

Animals↗
PubMed1985

Direct measurement of lateral transport in membranes by using time-resolved spatial photometry.

Spatially resolving light detectors allow, with proper calibration, quantitative analysis of the variations in two-dimensional intensity distributions over time. An ultrasensitive microfluorometer was assembled by using as a detector a microchannel plate-intensified video camera. The camera was interfaced with a software-based digital video analysis system to digitize, average, and process images and to directly control the timing of the experiments to minimize exposure of the specimen to light. The detector system has been characterized to allow its use as a photometer. A major application has been to perform fluorescence recovery after photobleaching measurements by using the camera in place of a photomultiplier tube (video-FRAP) with the goal of detecting possible anisotropic diffusion or convective flow. Analysis of the data on macromolecular diffusion in homogenous aqueous glycol solutions yielded diffusion constants in agreement with previous measurements. Results on lipid probe diffusion in dimyristoylphosphatidylcholine multibilayers indicated that at temperatures above the gel-to-liquid crystalline phase transition diffusion is isotropic, and analysis of video-FRAP data yielded diffusion coefficients consistent with those measured previously by using spot photobleaching. However, lipid probes in these multibilayers held just below the main phase transition temperature exhibited markedly anisotropic diffusive fluxes when the bleaching beam was positioned proximate to domain boundaries in the P beta' phase. Lipid probes and lectin receptor complexes diffused isotropically in fibroblast surface membranes with little evidence for diffusion channeled parallel to stress fibers. A second application was to trace the time evolution of cell surface reactions such as patching. The feasibility of following, on the optical scale, the growth of individual receptor clusters induced by the ligand wheat germ agglutinin was demonstrated.

Animals↗
PubMed2004

Transportation of reclaimed wastewater through a long pipe: inhibition of sulphide production by nitrite from the secondary treatment.

The agricultural reuse of reclaimed wastewater has become a necessity in places with water shortages. Frequently, this involves the operation of long transportation pipelines, like in the South Tenerife reuse system, whose main element is a completely filled 61 km long gravity pipe in cast iron. Sulphide generation, which could contribute to pipe corrosion, is a usual process taking place during transportation if anaerobic conditions prevail. In the Wastewater Treatment Plant of Santa Cruz (Tenerife, Spain) a partial nitrification process was achieved by increasing the mean residence time through the aeration step at low dissolved oxygen concentration. Such conditions, combined with the right temperature and a free ammonia concentration above 1 mg l(-1), inhibited nitratation and favoured nitritation, which led to concentrations of NO2-N above 8 mg l(-1) in the secondary effluent. During the transportation, nitrite inhibited the appearance of anaerobic conditions, and, consequently, no sulphide generation occurred. At the same time, a nitrite reduction process took place with a first order kinetics and a rate coefficient of 0.052 h(-1)' at 25 degrees C. A parallel behaviour between the nitrite depletion and the oxidation-reduction potential evolution along the pipeline was also observed.

Ammonia↗
PubMed1995

The abutment transfer driver: a prosthodontic implant adjunct.

Rapid, accurate seating and cementation of permanent implant abutment heads that have been substantially altered for interocclusal clearance or parallelism requirements can be accomplished with individual, custom cast, insertion devices. The evolution and design of these devices (abutment transfer drivers) for fixed and removable prostheses are described.

Cementation↗
PubMed2004

Oligoclonality in bladder cancer: the implication for molecular therapies.

PURPOSE: There is conflicting evidence in the published literature regarding the clonal or oligoclonal origin of bladder cancer. MATERIALS AND METHODS: A MEDLINE search of articles on the clonality, genetic, epigenetic and tumor microenvironment of bladder cancer cells was done. Laboratory and clinical studies were included and relevant articles were selected if tumor cell clonality was part of the study. We reviewed this published evidence. RESULTS: Current thinking proposes 2 main theories. 1) In the clonogenic theory multifocal and recurrent tumors evolve from a single transformed cell and, hence, all progeny share a number of identical genetic mutations. 2) The field change theory assumes a global change in the urothelium with multiple transformed cells evolving into mature tumors independently. The evidence for and against each theory is compelling. Of equal importance are the parallel epigenetic modifications and changes in the cellular microenvironment that permit tumor evolution. CONCLUSIONS: The presence of oligoclonality has implications for the potential efficacy of novel molecular therapeutic agents for bladder cancer. The molecular targets for such therapies must be widely sampled in a tumor population to assess expression in separate clones.

Carcinoma, Transitional Cell↗
PubMed1975

Secretion of calcium in pancreatic juice.

1. The orgin of the calcium secreted by the pancreas has been investigated in vivo in the guinea-pig by a study carried out in parallel (a) in the juice secreted in response to the injection of either secretin or caerulein and (b) in the pancreatic tissue and in cell fractions isolated thereform. 2. In agreement with previous findings we observed that the concentration of calcium is low in the secretin-stimulated and high in the caerulein-stimulated juice. In the latter calcium and protein are proportional (cal0 n-mole:mg). 3. After I.V. injection of 45Ca the radioactivity decreases rapidly and quasi-exponentially in the blood plasma. A roughly parallel time course is found in the secretin-stimulated juice: the evolution of the juice: plasma radioactivity ratio resembles that observed with the extraceullar space marker [3H]D-sorbitol. In contrast, the time course of 45Ca in plasma and caerulein-stimulated juice are not proportional: the high levels characteristic of this juice are reached several minutes after the injection and maintained thereafter. This increase is followed ca. 50 min later by the appearance of the newly synthesized [3H]L-leucine-labelled proteins. 4. The pancreatic tissue is rich in calcium which is localized primarily in zymogen granules (Ca.36 n-mole:mg protein) and mitochondria; the soluble cytoplasm is low in calcium. 5. The injected 45Ca accumulates in zymogen granules faster than [3H]L-leucine-labelled proteins. The 45Ca:protein ratio of these organelles is considerably lower than that of the caerulein-stimulated juice. 6. It is concluded (a) that calcium is secreted in to the pancreatic juice in two fractions, one (possibly released by simple diffusion) associated with the electrolyte component, the other with protein of the juice, (b) that zymogen granules are the major, but not the only source of the latter fraction, and (c) that the zymogen granule-associated calcium joins the exportable proteins some time after their synthesis, possibly in the Golgi complex and/or in the condensing vacuoles.

Animals↗