Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “electronic structure”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 883 records · Page 49Linked to original sources
PubMed2003

Molecular and electronic structures of bis-(o-diiminobenzosemiquinonato)metal(II) complexes (Ni, Pd, Pt), their monocations and -anions, and of dimeric dications containing weak metal-metal bonds.

Two series of square planar, diamagnetic, neutral complexes of nickel(II), palladium(II), and platinum(II) containing two N,N-coordinated o-diiminobenzosemiquinonate(1-) pi radical ligands have been synthesized and characterized by UV-vis and (1)H NMR spectroscopy: [M(II)((2)L(ISQ))(2)], M = Ni (1), Pd (2), Pt (3), and [M(II)((3)L(ISQ))(2)] M = Ni (4), Pd (5), Pt (6). H(2)[(2)L(PDI)] represents 3,5-di-tert-butyl-o-phenylenediamine and H(2)[(3)L(PDI)] is N-phenyl-o-phenylenediamine; (L(ISQ))(1-) is the o-diiminobenzosemiquinonate pi radical anion, and (L(IBQ))(0) is the o-diiminobenzoquinone form of these ligands. The structures of complexes 1, 4, 5, and 6 have been (re)determined by X-ray crystallography at 100 K. Cyclic voltammetry established that the complete electron-transfer series consisting of a dianion, monoanion, neutral complex, a mono- and a dication exists: [M(L)(2)](z)z = -2, -1, 0, 1+, 2+. Each species has been electrochemically generated in solution and their X-band EPR and UV-vis spectra have been recorded. The oxidations and reductions are invariably ligand centered. Two o-diiminobenzoquinones(0) and two fully reduced o-diiminocatecholate(2-) ligands are present in the dication and dianion, respectively, whereas the monocations and monoanions are delocalized mixed valent class III species [M(II)(L(ISQ))(L(IBQ))](+) and [M(II)(L(ISQ))(L(PDI))](-), respectively. One-electron oxidations of 1 and trans-6 yield the diamagnetic dications [cis-[Ni(II)((2)L(ISQ))((2)L(IBQ))](2)]Cl(2) (7) and [trans-[Pt(II)((3)L(ISQ))((3)L(IBQ))](2)](CF(3)SO(3))(2) (8), respectively, which have been characterized by X-ray crystallography; both complexes possess a weak M.M bond and the ligands adopt an eclipsed configuration due to weak bonding interactions via pi stacking.

Journal Article↗
PubMed1978

Electronic structures of some antimicrobial N-chloramines. Possible existence of intramolecular hydrogen bonding and its effect on germicidal efficiency.

The photoelectron spectra of eight N-chloramines and N,N-dichloramines derived from either alpha-aminoisobutyric acid or 2-amino-2-methylpropanol have been measured. The lone-pair ionization potentials obtained from the photoelectron spectra have been interpreted to indicate that a substantial intramolecular interaction exists between tne N-H function and the various oxygen lone pairs of the N-chloramines. Such an intramolecular interaction for the N-chloramines can explain at least in part why these molecules are less potent as antimicrobial agents than are the N,N-cichloramine analogues for which a similar intramolecular interaction is impossible.

Anti-Infective Agents, Local↗
PubMedDate not supplied

Electronic structure of some adenosine receptor antagonists. VQSAR Investigation.

A QSAR model has been developed for 1,3-dimethylxanthines as adenosine receptor antagonists. The model is capable of predicting the affinity toward both the A1 and A2 receptors. Constitutional, geometrical, topological, electronic descriptors (computed at the ab initio 6-31G level), and some empirical descriptors related to the hypophilicity were computed and analyzed. A two step computational strategy was adopted to select the descriptors relevant to the A1 or the A2 affinity. In the first step, each of the four main groups of descriptors is treated independently. Multiple regression analysis lead to a set of equations that reflect the weight of each of the studied descriptors. The most relevant of these descriptors were grouped, and a new multiple regression analysis has been carried out and arrived at the final QSAR model. These QSAR equations account for almost all the A2 and an appreciable part of the A1 affinity. The proposed model has been examined as a general tool of predicting the activity toward the adenosine receptor sites. A validation set of 22 xanthines were selected, and their activities were computed using the proposed QSAR model. The correspondence between the predicted and observed activities is excellent. Anova statistical analysis on the data of the validation set elaborates on the quality of these fits.

Models, Molecular↗
PubMed2006

Structural, electronic, and chemical properties of nanoporous carbon.

Nanoporous carbon (NPC) exhibits unexplained chemical properties, making it distinct from other graphenelike materials, such as graphite, fullerenes, or nanotubes. In this Letter, we analyze the properties of NPC in terms of its structural motifs, which are derived from defects in distorted graphene sheets. Our density-functional theory calculations show that these motifs can be present in high concentration (up to 1%). Some of them induce localized levels close to the Fermi level, therefore leading to local charging and controlling the material's chemical function, for example, as a catalyst.

Journal Article↗
PubMed2003

Polyunsaturated dicarboxylate tethers connecting dimolybdenum redox and chromophoric centers: absorption spectra and electronic structures.

The absorption spectra of a series of compounds of the type [Mo(2)(DAniF)(3)](O(2)CXCO(2))[Mo(2)(DAniF)(3)] (DAniF = N,N '-di-p-anisylformamidinate) have been measured and revealed a strong dependence of the electronic transitions and, therefore, the colors upon the chemical nature of the dicarboxylate linker. The more intense colors and lower energy absorptions are observed with those compounds having unsaturated dicarboxylate linkers. Static and time-dependent DFT calculations were undertaken to identify the electronic excitations responsible for the observed colors. For those compounds with chemically unsaturated and fully conjugated dicarboxylate linkers (oxalate, 6; fumarate, 8; acetylene dicarboxylate, 9; cis,cis-muconate, 11; trans,trans-muconate, 12; tamuate, 13; texate, 14; terephthalate, 15), the lowest energy absorptions are Mo(2)(4+) delta --> dicarboxylate pi metal-to-ligand charge transfer transitions. Those compounds with chemically saturated linkers (succinate, 20) have delta --> delta transitions as their lowest energy absorptions with essentially independent and noninteracting Mo(2)(4+) chromophores.

Alkenes↗
PubMed2004

A homoleptic molybdenum(IV) enolate complex: synthesis, molecular and electronic structure, and NCN group transfer to form a terminal cyanoimide of molybdenum(VI).

A monomeric molybdenum(IV) tetrakis enolate complex Mo(OC[Ad]Mes)(4), 1, where Ad = 2-adamantylidene and Mes = 2,4,6-Me(3)C(6)H(2), has been synthesized and characterized structurally by X-ray diffraction, chemically through NCN group-transfer reactivity, and computationally to investigate the origins of the observed structure that is intermediate between tetrahedral and square planar. No prior examples of Mo(OR)(4) have been structurally characterized despite having been the subject of both experimental and theoretical interest. Complex 1 has a singlet ground state and thus a metal-based lone pair of electrons. The latter has been visualized with the aid of the electron localization function (ELF) and appears as a two-bladed propeller with D(2)(d)() symmetry. Complex 1 makes a simple 1:1 adduct with t-BuNC that is trigonal bipyramidal with an axial isocyanide as demonstrated by X-ray crystallography. This trigonal bipyramidal 1:1 adduct has a triplet ground state and provides a model for the way in which 1 interacts with NCN group donor dbabhCN prior to NCN group transfer to form the terminal cyanoimide complex 1-NCN. The calculated Mo-N bond dissociation enthalpy for 1-NCN is 104 kcal mol(-1), 30 kcal mol(-1) greater than that for the corresponding dissociation of NCN from cyanophosphiniminato NCNPMe(3).

Journal Article↗
PubMed2006

Extension of molecular electronic structure methods to the solid state: computation of the cohesive energy of lithium hydride.

We describe a simple strategy for calculating the cohesive energy of certain kinds of crystal using readily available quantum chemistry techniques. The strategy involves the calculation of the electron correlation energies of a hierarchy of free clusters, and the cohesive energy E(coh) is extracted from the constant of proportionality between these correlation energies and the number of atoms in the limit of large clusters. We apply the strategy to the LiH crystal, using the MP2 and CCSD(T) schemes for the correlation energy, and show that for this material E(coh) can be obtained to an accuracy of approximately 30 meV per ion pair. Comparison with the experimental value, after correction for zero-point energy, confirms this accuracy.

Algorithms↗
PubMed1978

Electronic structure of proteins and DNA: solid-state aspects.

The generalization of the Hartree-Fock method to periodic systems (polymers or crystals) using a linear combination of atomic orbitals (LCAO) makes it possible to calculate ab initio self-consistent-field LCAO band structures of periodic protein and DNA models. The results obtained for polyglycine, polyalanine, and for the mixed poly(Gly-Ala) periodic chain, as well as for the four homopolynucleotides, are presented. The correction of these band structures for excitonic effects (in the excited state) and for long-range correlation effects is shown also. Furthermore, it is outlined how the short-range correlation in insulator biopolymers and correlation effects in proteins with a partially filled valence band (for instance, due to charge transfer) can be calculated. The Coherent Potential Approximation is outlined and its possible application to aperiodic proteins and DNA is pointed out. Finally the effect of an electron acceptor on proteins or of a chemical carcinogen bound to DNA is discussed as a local perturbation of the band structures of these systems on the basis of the self-consistent resolvent method.

Chemical Phenomena↗
PubMed2000

Electronic structure and nonlinear optical properties of model push-pull polyenes with modified indanone groups: a theoretical investigation

Several model polyenes with modified indanone groups were studied by means of density functional theory (DFT) B3LYP/6-31G*, ab initio HF/3-21G* and semiempirical AM1 methods. We investigated the effect of several substituents upon the relationship between the structure, spatial distribution of the highest occupied and the lowest unoccupied pi-MOs, a concept of the global softness and the global hardness as well as both linear and nonlinear polarizabilities for the set of pi-electron chromophores represented by the short-chain model polyene (butadiene) carrying out p-methoxyphenyl group on the one end and several modified indanone groups on the opposite end of the molecule. As probing endocyclic groups used to modify the structure of indanone the following substituents: > CH2; > C=O; > SO2, > C=CH(NO2) and > C=C(CN)2 were selected. The cubic relationship between the polarizability and the global softness was found. The highest polarizabilities (alpha, beta, gamma) are predicted for the derivatives with > C=C(CN)2 group. It was found that the value of beta depends mainly on the difference between dipole moments in the excited and ground states of the molecules. In the case of > SO2 group the results of AMI calculations significantly deviate from relationships found for other derivatives. Experimental IR and Raman spectra of newly synthesized indandione derivative of cinnamaldehyde were compared with computed ones.

Journal Article↗