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At least 883 records · Page 49Linked to original sources

Adaptive critic neural network-based object grasping control using a three-finger gripper.

Grasping of objects has been a challenging task for robots. The complex grasping task can be defined as object contact control and manipulation subtasks. In this paper, object contact control subtask is defined as the ability to follow a trajectory accurately by the fingers of a gripper. The object manipulation subtask is defined in terms of maintaining a predefined applied force by the fingers on the object. A sophisticated controller is necessary since the process of grasping an object without a priori knowledge of the object's size, texture, softness, gripper, and contact dynamics is rather difficult. Moreover, the object has to be secured accurately and considerably fast without damaging it. Since the gripper, contact dynamics, and the object properties are not typically known beforehand, an adaptive critic neural network (NN)-based hybrid position/force control scheme is introduced. The feedforward action generating NN in the adaptive critic NN controller compensates the nonlinear gripper and contact dynamics. The learning of the action generating NN is performed on-line based on a critic NN output signal. The controller ensures that a three-finger gripper tracks a desired trajectory while applying desired forces on the object for manipulation. Novel NN weight tuning updates are derived for the action generating and critic NNs so that Lyapunov-based stability analysis can be shown. Simulation results demonstrate that the proposed scheme successfully allows fingers of a gripper to secure objects without the knowledge of the underlying gripper and contact dynamics of the object compared to conventional schemes.

Fingers↗

Neural network-based adaptive dynamic surface control for a class of uncertain nonlinear systems in strict-feedback form.

The dynamic surface control (DSC) technique was developed recently by Swaroop et al. This technique simplified the backstepping design for the control of nonlinear systems in strict-feedback form by overcoming the problem of "explosion of complexity." It was later extended to adaptive backstepping design for nonlinear systems with linearly parameterized uncertainty. In this paper, by incorporating this design technique into a neural network based adaptive control design framework, we have developed a backstepping based control design for a class of nonlinear systems in strict-feedback form with arbitrary uncertainty. Our development is able to eliminate the problem of "explosion of complexity" inherent in the existing method. In addition, a stability analysis is given which shows that our control law can guarantee the uniformly ultimate boundedness of the solution of the closed-loop system, and make the tracking error arbitrarily small.

Algorithms↗

State estimation for delayed neural networks.

In this letter, the state estimation problem is studied for neural networks with time-varying delays. The interconnection matrix and the activation functions are assumed to be norm-bounded. The problem addressed is to estimate the neuron states, through available output measurements, such that for all admissible time-delays, the dynamics of the estimation error is globally exponentially stable. An effective linear matrix inequality approach is developed to solve the neuron state estimation problem. In particular, we derive the conditions for the existence of the desired estimators for the delayed neural networks. We also parameterize the explicit expression of the set of desired estimators in terms of linear matrix inequalities (LMIs). Finally, it is shown that the main results can be easily extended to cope with the traditional stability analysis problem for delayed neural networks. Numerical examples are included to illustrate the applicability of the proposed design method.

Algorithms↗

Stable neurovisual servoing for robot manipulators.

In this paper, we propose a stable neurovisual servoing algorithm for set-point control of planar robot manipulators in a fixed-camera configuration an show that all the closed-loop signals are uniformly ultimately bounded (UUB) and converge exponentially to a small compact set. We assume that the gravity term and Jacobian matrix are unknown. Radial basis function neural networks (RBFNNs) with online real-time learning are proposed for compensating both gravitational forces and errors in the robot Jacobian matrix. The learning rule for updating the neural network weights, similar to a back propagation algorithm, is obtained from a Lyapunov stability analysis. Experimental results on a two degrees of freedom manipulator are presented to evaluate the proposed controller.

Algorithms↗

Stability of a one-dimensional discrete-time asynchronous swarm.

In this correspondence, we consider a discrete time one-dimensional asynchronous swarm. First, we describe the mathematical model for motions of the swarm members. Then, we analyze the stability properties of that model. The stability concept that we consider, which matches exactly with stability of equilibria in control theory, characterizes stability of a particular position (relative arrangement) of the swarm members. We call that position the comfortable position (with comfortable intermember distances). Our swarm model and stability analysis are different from other asynchronous swarm models considered in the literature. In particular, in our analysis we employ results on contractive mappings from the parallel and distributed computation literature. The application of these results to the swarm coordination problem is important by itself since they might prove useful also in n-dimensional swarms.

Algorithms↗

Adaptive dynamic surface control of flexible-joint robots using self-recurrent wavelet neural networks.

A new method for the robust control of flexible-joint (FJ) robots with model uncertainties in both robot dynamics and actuator dynamics is proposed. The proposed control system is a combination of the adaptive dynamic surface control (DSC) technique and the self-recurrent wavelet neural network (SRWNN). The adaptive DSC technique provides the ability to overcome the "explosion of complexity" problem in backstepping controllers. The SRWNNs are used to observe the arbitrary model uncertainties of FJ robots, and all their weights are trained online. From the Lyapunov stability analysis, their adaptation laws are induced, and the uniformly ultimately boundedness of all signals in a closed-loop adaptive system is proved. Finally, simulation results for a three-link FJ robot are utilized to validate the good position tracking performance and robustness against payload uncertainties and external disturbances of the proposed control system.

Journal Article↗

Wavelet neural network control for linear ultrasonic motor drive via adaptive sliding-mode technique.

A wavelet neural network (WNN) control system is proposed to control the moving table of a linear ultrasonic motor (LUSM) drive system to track periodic reference trajectories in this study. The design of the WNN control system is based on an adaptive sliding-mode control technique. The structure and operating principle of the LUSM are introduced, and the driving circuit of the LUSM, which is a voltage source inverter using two-inductance two capacitance (LLCC) resonant technique, is introduced. Because the dynamic characteristics and motor parameters of the LUSM are nonlinear and time varying, a WNN control system is designed based on adaptive sliding-mode control technique to achieve precision position control. In the WNN control system, a WNN is used to learn the ideal equivalent control law, and a robust controller is designed to meet the sliding condition. Moreover, the adaptive learning algorithms of the WNN and the bound estimation algorithm of the robust controller are derived from the sense of Lyapunov stability analysis. The effectiveness of the proposed WNN control system is verified by some experimental results in the presence of uncertainties.

Journal Article↗

The dual role of a loop with low loop contact distance in folding and domain swapping.

Alpha helices, beta strands, and loops are the basic building blocks of protein structure. The folding kinetics of alpha helices and beta strands have been investigated extensively. However, little is known about the formation of loops. Experimental studies show that for some proteins, the formation of a single loop is the rate-determining step for folding, whereas for others, a loop (or turn) can misfold to serve as the hinge loop region for domain-swapped species. Computer simulations of an all-atom model of fragment B of Staphylococcal protein A found that the formation of a single loop initiates the dominant folding pathway. On the other hand, the stability analysis of intermediates suggests that the same loop is a likely candidate to serve as a hinge loop for domain swapping. To interpret the simulation result, we developed a simple structural parameter: the loop contact distance (LCD), or the sequence distance of contacting residues between a loop and the rest of the protein. The parameter is applied to a number of other proteins, including SH3 domains and prion protein. The results suggest that a locally interacting loop (low LCD) can either promote folding or serve as the hinge region for domain swapping. Thus, there is an intimate connection between folding and domain swapping, a possible cause of misfolding and aggregation.

Computer Simulation↗

High stability of a ferredoxin from the hyperthermophilic archaeon A. ambivalens: involvement of electrostatic interactions and cofactors.

The ferredoxin from the thermophilic archaeon Acidianus ambivalens is a small monomeric seven-iron protein with a thermal midpoint (T(m)) of 122 degrees C (pH 7). To gain insight into the basis of its thermostability, we have characterized unfolding reactions induced chemically and thermally at various pHs. Thermal unfolding of this ferredoxin, in the presence of various guanidine hydrochloride (GuHCl) concentrations, yields a linear correlation between unfolding enthalpies (DeltaH[T(m)]) and T(m) from which an upper limit for the heat capacity of unfolding (DeltaC(P)) was determined to be 3.15 +/- 0.1 kJ/(mole * K). Only by the use of the stronger denaturant guanidine thiocyanate (GuSCN) is unfolding of A. ambivalens ferredoxin at pH 7 (20 degrees C) observed ([GuSCN](1/2) = 3.1 M; DeltaG(U)[H(2)O] = 79 +/- 8 kJ/mole). The protein is, however, less stable at low pH: At pH 2.5, T(m) is 64 +/- 1 degrees C, and GuHCl-induced unfolding shows a midpoint at 2.3 M (DeltaG(U)[H(2)O] = 20 +/- 1 kJ/mole). These results support that electrostatic interactions contribute significantly to the stability. Analysis of the three-dimensional molecular model of the protein shows that there are several possible ion pairs on the surface. In addition, ferredoxin incorporates two iron-sulfur clusters and a zinc ion that all coordinate deprotonated side chains. The zinc remains bound in the unfolded state whereas the iron-sulfur clusters transiently form linear three-iron species (in pH range 2.5 to 10), which are associated with the unfolded polypeptide, before their complete degradation.

Archaeal Proteins↗

Song learning accelerates allopatric speciation.

The songs of many birds are unusual in that they serve a role in identifying conspecific mates, yet they are also culturally transmitted. Noting the apparently high rate of diversity in one avian taxon, the songbirds, in which song learning appears ubiquitous, it has often been speculated that cultural transmission may increase the rate of speciation. Here we examine the possibility that song learning affects the rate of allopatric speciation. We construct a population-genetic model of allopatric divergence that explores the evolution of genes that underlie learning preferences (predispositions to learn some songs over others). We compare this with a model in which mating signals are inherited only genetically. Models are constructed for the cases where songs and preferences are affected by the same or different loci, and we analyze them using analytical local stability analysis combined with simulations of drift and directional sexual selection. Under nearly all conditions examined, song divergence occurs more readily in the learning model than in the nonlearning model. This is a result of reduced frequency-dependent selection in the learning models. Cultural evolution causes males with unusual genotypes to tend to learn from the majority of males around them, and thus develop songs compatible with the majority of the females in the population. Unusual genotypes can therefore be masked by learning. Over a wide range of conditions, learning therefore reduces the waiting time for speciation to occur and can be predicted to accelerate the rate of speciation.

Animals↗

The role of G-proteins in the regulation of pacemaking activity.

This work is concerned with modeling the key interrelated biochemical reactions involved in initiating and inhibiting pacemaking activity in the mammalian sinoatrial node. A detailed model involving G-proteins was developed to better represent the activation pathway for adenylate cyclase. Concentration profiles of an activated G-protein complex [alpha(T)C] were established as a function of the membrane bound calcium calmodulin concentration. A previously developed model used to establish temporal profiles of cAMP was improved using the G-protein effects through the [alpha(T)C] functionality. Methods were also developed to model inhibition of G-protein by acetylcholine. Analytical solutions were developed to predict acetylcholine concentration profiles as a function of diffusion parameter and duration of acetylcholine pulses. The model was used to demonstrate suppression of cAMP by acetylcholine through G-protein pathways. It provides a basis for a tool to quantify key biochemical species during stimulation and inhibition of sinoatrial node pacemaking. A stability analysis of the model equations has potential application in studying the link between the biochemical species concentrations and abnormal effects in sinoatrial node pacemaking.

Acetylcholine↗

Modeling three-dimensional elastic wave propagation in circular cylindrical structures using a finite-difference approach.

Wave propagation along circular cylindrical structures is important for nondestructive-testing applications and shocks in tubes. To simulate elastic wave propagation phenomena in such structures the governing equations in cylindrical coordinates are solved numerically. To reduce the required amount of computer memory and the computational time, the stress components are eliminated in the equilibrium equations. In the resulting coupled partial differential equations, in which only the three displacement components are involved, the derivatives with respect to spatial coordinates and time are approximated using second order central differences. This leads to the present new approach, which is both accurate and efficient. In order to obtain a stable scheme the displacements must be allocated on a staggered grid. The von Neumann stability analysis is performed and the result is compared with an existing empirical criterion. Mechanical energies are observed in order to validate the finite-difference code. Since no material damping or energy dissipation is taken into account in the equations of motion, the total energy must remain constant over time. Only negligible variations are observed during long-term simulations. Dispersion relations are used to check the physical behavior of the waves calculated with the proposed finite-difference method: Theoretically calculated curves are compared with values obtained by a spectrum estimation method, applied to the results of a simulation.

Journal Article↗

Spontaneous pattern formation in an acoustical resonator .

A dynamical system of equations describing parametric sound generation (PSG) in a dispersive large aspect ratio resonator is derived. The model generalizes previously proposed descriptions of PSG by including diffraction effects and is analogous to the model used in theoretical studies of optical parametric oscillation. A linear stability analysis of the solution below the threshold of subharmonic generation reveals the existence of a pattern forming instability, which is confirmed by numerical integration. The conditions of emergence of periodic patterns in transverse space are discussed in the acoustical context.

Journal Article↗

An analytical prediction of the oscillation and extinction thresholds of a clarinet.

This paper investigates the dynamic range of the clarinet from the oscillation threshold to the extinction at high pressure level. The use of an elementary model for the reed-mouthpiece valve effect combined with a simplified model of the pipe assuming frequency independent losses (Raman's model) allows an analytical calculation of the oscillations and their stability analysis. The different thresholds are shown to depend on parameters related to embouchure parameters and to the absorption coefficient in the pipe. Their values determine the dynamic range of the fundamental oscillations and the bifurcation scheme at the extinction.

Acoustics↗

Impact of agricultural practices on the Zea mays L. endophytic community.

Agricultural practices are known to alter bulk soil microbial communities, but little is known about the effect of such practices on the plant endophytic community. We assessed the influence of long-term applications (20 years) of herbicides and different fertilizer types on the endophytic community of maize plants grown in different field experiments. Nested PCR-denaturing gradient gel electrophoresis (DGGE) analyses targeting general bacteria, type I or II methanotrophs, actinomycetes, and general fungi were used to fingerprint the endophytic community in the roots of Zea mays L. Low intraplant variability (reproducible DGGE patterns) was observed for the bacterial, type I methanotroph, and fungal communities, whereas the patterns for endophytic actinomycetes exhibited high intraplant variability. No endophytic amplification product was obtained for type II methanotrophs. Cluster and stability analysis of the endophytic type I methanotroph patterns differentiated maize plants cultivated by using mineral fertilizer from plants cultivated by using organic fertilizer with a 100% success rate. In addition, lower methanotroph richness was observed for mineral-fertilized plants than for organically fertilized plants. The use of herbicides could not be traced by fingerprinting the endophytic type I methanotrophs or by evaluating any other endophytic microbial group. Our results indicate that the effect of agrochemicals is not limited to the bulk microbial community but also includes the root endophytic community. It is not clear if this effect is due to a direct effect on the root endophytic community or is due to changes in the bulk community, which are then reflected in the root endophytic community.

Agriculture↗

Specific effects of ribosome-tethered molecular chaperones on programmed -1 ribosomal frameshifting.

The ribosome-associated molecular chaperone complexes RAC (Ssz1p/Zuo1p) and Ssb1p/Ssb2p expose a link between protein folding and translation. Disruption of the conserved nascent peptide-associated complex results in cell growth and translation fidelity defects. To better understand the consequences of deletion of either RAC or Ssb1p/2p, experiments relating to cell growth and programmed ribosomal frameshifting (PRF) were assayed. Genetic analyses revealed that deletion of Ssb1p/Ssb2p or of Ssz1p/Zuo1p resulted in specific inhibition of -1 PRF and defects in Killer virus maintenance, while no effects were observed on +1 PRF. These factors may provide a new set of targets to exploit against viruses that use -1 PRF. Quantitative measurements of growth profiles of isogenic wild-type and mutant cells showed that translational inhibitors exacerbate underlying growth defects in these mutants. Previous studies have identified -1 PRF signals in yeast chromosomal genes and have demonstrated an inverse relationship between -1 PRF efficiency and mRNA stability. Analysis of published DNA microarray experiments reveals conditions under which Ssb1, Ssb2, Ssz1, and Zuo1 transcript levels are regulated independently of those of genes encoding ribosomal proteins. Thus, the findings presented here suggest that these trans-acting factors could be used by cells to posttranscriptionally regulate gene expression through -1 PRF.

DNA-Binding Proteins↗

Herpes simplex virus type 1 tegument protein VP22 induces the stabilization and hyperacetylation of microtubules.

The role of the herpes simplex virus type 1 tegument protein VP22 during infection is as yet undefined. We have previously shown that VP22 has the unusual property of efficient intercellular transport, such that the protein spreads from single expressing cells into large numbers of surrounding cells. We also noted that in cells expressing VP22 by transient transfection, the protein localizes in a distinctive cytoplasmic filamentous pattern. Here we show that this pattern represents a colocalization between VP22 and cellular microtubules. Moreover, we show that VP22 reorganizes microtubules into thick bundles which are easily distinguishable from nonbundled microtubules. These bundles are highly resistant to microtubule-depolymerizing agents such as nocodazole and incubation at 4 degreesC, suggesting that VP22 has the capacity to stabilize the microtubule network. In addition, we show that the microtubules contained in these bundles are modified by acetylation, a marker for microtubule stability. Analysis of infected cells by both immunofluorescence and measurement of microtubule acetylation further showed that colocalization between VP22 and microtubules, and induction of microtubule acetylation, also occurs during infection. Taken together, these results suggest that VP22 exhibits the properties of a classical microtubule-associated protein (MAP) during both transfection and infection. This is the first demonstration of a MAP encoded by an animal virus.

Acetylation↗

Functional equivalency and diversity of cis-acting elements among yeast replication origins.

The DNA replication origins of the yeast Saccharomyces cerevisiae require several short functional elements, most of which are not conserved in sequence. To better characterize ARS305, a replicator from a chromosomal origin, we swapped functional DNA elements of ARS305 with defined elements of ARS1. ARS305 contains elements that are functionally exchangeable with ARS1 A and B1 elements, which are known to bind the origin recognition complex; however, the ARS1 A element differs in that it does not require a 3' box adjacent to the essential autonomously replicating sequence consensus. At the position corresponding to ARS1 B3, ARS305 has a novel element, B4, that can functionally substitute for every type of short element (B1, B2, and B3) in the B domain. Unexpectedly, the replacement of element B4 by ARS1 B3, which binds ABF1p and is known as a replication enhancer, inhibited ARS305 function. ARS305 has no short functional element at or near positions corresponding to the B2 elements in ARS1 and ARS307 but contains an easily unwound region whose functional importance was supported by a broad G+C-rich substitution mutation. Surprisingly, the easily unwound region can functionally substitute for the ARS1 B2 element, even though ARS1 B2 was found to possess a distinct DNA sequence requirement. The functionally conserved B2 element in ARS307 contains a known sequence requirement, and helical stability analysis of linker and minilinker mutations suggested that B2 also contains a DNA unwinding element (DUE). Our findings suggest that yeast replication origins employ a B2 element or a DUE to mediate a common function, DNA unwinding during initiation, although not necessarily through a common mechanism.

DNA Helicases↗