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PubMed1966

Carbohydrate catabolism of Mima polymorpha. I. Supplemental energy from glucose added to a growth medium.

Bell, Emily J. (University of Cincinnati, Cincinnati, Ohio), and Adrienne Marus. Carbohydrate catabolism of Mima polymorpha. I. Supplemental energy from glucose added to a growth medium. J. Bacteriol. 91:2223-2228. 1966.-Mima polymorpha, unable to grow in the presence of nonphosphorylated sugars as sole source of carbon and energy, grows rapidly and well in the presence of acetate, ethyl alcohol, short-chained fatty acids, and permeable intermediates of the tricarboxylic acid cycle. Chemical evidence indicates, however, a limited uptake of glucose. Further, glucose, although incapable of supporting growth as the sole source of carbon and energy, does increase both the rate of growth and the total cell crop when added as an ancillary nutrient to cells growing in a mineral salts medium which contains 0.03 m acetate as the carbon and energy source. A yield of energy from an abortive catabolism of glucose is hypothesized. In addition to the enhancement of growth rate and total cell crop, this hypothesis is supported by the facts that: (i) transport systems for the slightly permeable phosphorylated hexoses appear to be induced when glucose is incorporated into a medium capable of supporting growth and (ii) the rate of induction and the total activity of an inducible enzyme, isocitrate lyase E.C. 4.1.3.1., are markedly increased in the presence of supplemental glucose.

Acetates↗
PubMed1984

Toxic effects of acid rain on aquatic and terrestrial ecosystems.

The historical perspective as well as the nature and causes of acid precipitation are presented. The toxicological effects of acid precipitation on lakes, other water bodies, fish, and invertebrate fauna are reviewed. In addition, the effects of this phenomenon on soil productivity and forest growth are examined. It appears that grave toxic effects have been and are being experienced by aquatic systems, but there is little reliable evidence of economic damage to crops, natural vegetation, and soil and biological processes. There may be insidious long-term effects on terrestrial ecosystems, particularly in the more susceptible areas.

Acids↗
PubMed2001

Development and validation of a spatially explicit individual-based mixed crop growth model.

Spatial disposition of plants in intercrops, and differences in sowing time between species, can strongly affect their ecological interactions and, in consequence, the system's viability and performance. Empirical exploration of a wide range of spatial and temporal plant arrangements is costly and time-consuming. Modelling the growth of mixed crops is a tool which, combined with empirical tests, can greatly reduce the time and investment required for this task. Spatially explicit, individual-based dynamic models seem well suited for this purpose; their exploration and experimental validation for the case of simple, two-species, artificial plant communities, can also provide further insight as to how the spatial and temporal scales of a plant's multispecific neighbourhood affect its growth and performance. The aim of this investigation was to further develop a published spatially explicit individual-based mixed crop growth model [Vandermeer, J. H. (1989). The Ecology of Intercropping, Cambridge, U.K.: Cambridge University Press, p. 237], and to validate it experimentally. With this purpose in mind: (1) computer programs to simulate individual plant growth and to perform statistical analysis of both deterministic and stochastic versions of the model were developed; (2) the model was parametrized using a complex experimental diculture with several cohorts and spatial arrangements; (3) the predictive capacity of the model was tested using independent spatio-temporal experimental arrangements; (4) a modified version of the model was written, which abandons the assumption of linearity of the neighbourhood index at the cost of increasing the number of parameters; (5) The performance of stochastic versions of both Vandermeer's and our modified model were compared, employing a non-parametric measure of goodness of fit. We conclude that this approach to modelling plant growth subject to intra and interspecific competition is a remarkably efficient, general, conceptually elegant, heuristic tool whose predictive power can be further improved when nonlinear terms are introduced into the neighbourhood competition index, as done in our modified version of Vandermeer's model.

Agriculture↗
PubMed1998

An indicator of pesticide environmental impact based on a fuzzy expert system.

Pesticide use options available to farmers differ strongly with respect to the risks they pose to the environment. This paper proposes a fuzzy expert system to calculate an indicator "Ipest" which reflects an expert perception of the potential environmental impact of the application of a pesticide in a field crop. We defined four modules, one reflecting the presence (rate of application) of the pesticide, the other three reflecting the risk for three major environmental compartments (groundwater, surface water, air). The input variables for these modules are pesticide properties, site-specific conditions and characteristics of the pesticide application. For each input variable two functions describing membership to the fuzzy subsets Favourable (F) and Unfavourable (U) have been defined. These functions are based on criteria drawn from the literature or on the authors' expert judgment. The expert system calculates the value of modules according to the degree of membership of the input variables to the fuzzy subsets F and U and according to sets of decision rules. The four modules can be considered individually or can be aggregated (again according to membership to fuzzy subsets F and U and a set of decision rules) into the indicator Ipest. The system is flexible and can be turned to expert perception, it can be used as a decision aid tool to rank or choose between alternative pesticide application options with respect to their potential environmental impact. Results of a sensitivity analysis and module and Ipest scores for some pesticide application cases are presented. An agro-ecological indicator IPEST, based on the expert system, is proposed as a tool to assess the environmental impact of all pesticide applications related to a crop within a year. The practical implementation of the expert system and its validation are discussed.

Biodegradation, Environmental↗
PubMed2005

Acclimation of photosynthesis to high irradiance in rice: gene expression and interactions with leaf development.

Rice (Oryza sativa L.) has been used to study the long-term responses of photosynthesis to high irradiance focusing on the composition of the photosynthetic apparatus and leaf morphology. Typical sun/shade differences in chloroplast composition are seen in the fifth leaf following growth in high irradiance compared with low irradiance (1000 and 200 micromol m(-2) s(-1), respectively): higher light-saturated rates of photosynthesis (P(max)), higher amounts of Rubisco protein, and a lower chlorophyll a:b ratio. In addition, leaves were thicker under high light compared with low light. However, responses appear more complex when leaf developmental stage is considered. Using a system of transferring plants from low to high light in the laboratory responses that occur before and after full leaf extension have been studied. Acclimation of photosynthesis is limited by leaf age: the transfer to high light, post-leaf extension, is characterized by alterations in chlorophyll a:b but not in Rubisco protein, which may be limited by leaf morphology. Microarray analysis of gene expression was carried out on plants that were transferred to high light post-leaf extension. A down-regulation of light-harvesting genes was seen. No change in the expression level of Rubisco genes was observed. Up-regulation of genes involved in photoprotection was observed. It was also shown that high-light leaf morphology is established prior to formation of the zone of cellular elongation and division. The endogenous and environmental factors which establish the characteristics of high light acclimation may be important for attaining high rates of assimilation in leaves and crop canopies, and the fifth leaf in rice provides a convenient model system for the determination of the mechanisms involved.

Acclimatization↗
PubMed2005

Qualitative and quantitative PCR methods for event-specific detection of genetically modified cotton Mon1445 and Mon531.

Based on the DNA sequences of the junctions between recombinant and cotton genomic DNA of the two genetically modified (GM) cotton varieties, herbicide-tolerance Mon1445 and insect-resistant Mon531, event-specific primers and probes for qualitative and quantitative PCR detection for both GM cotton varieties were designed, and corresponding detection methods were developed. In qualitative PCR detection, the simplex and multiplex PCR detection systems were established and employed to identify Mon1445 and Mon531 from other GM cottons and crops. The limits of detection (LODs) of the simplex PCR were 0.05% for both Mon1445 and Mon531 using 100 ng DNA templates in one reaction, and the LOD of multiplex PCR analysis was 0.1%. For further quantitative detection using TaqMan real-time PCR systems for Mon1445 and Mon531, one plasmid pMD-ECS, used as reference molecule was constructed, which contained the quantitative amplified fragments of Mon1445, Mon531, and cotton endogenous reference gene. The limits of quantification (LOQs) of Mon1445 and Mon531 event-specific PCR systems using plasmid pMD-ECS as reference molecule were 10 copies, and the quantification range was from 0.03 to 100% in 100 ng of the DNA template for one reaction. Thereafter, five mixed cotton samples containing 0, 0.5, 0.9, 3 and 5% Mon1445 or Mon531 were quantified using established real-time PCR systems to evaluate the accuracy and precision of the developed real-time PCR detection systems. The accuracy expressed as bias varied from 1.33 to 8.89% for tested Mon1445 cotton samples, and from 2.67 to 6.80% for Mon531. The precision expressed as relative standard deviations (RSD) were different from 1.13 to 30.00% for Mon1445 cotton, and from 1.27 to 24.68% for Mon531. The range of RSD was similar to other laboratory results (25%). Concluded from above results, we believed that the established event-specific qualitative and quantitative PCR systems for Mon1445 and Mon531 in this study are acceptable and suitable for GM cotton identification and quantification.

Animals↗
PubMed2006

Co-existence of agricultural production systems.

Strategies and best practices for the co-existence of GM and non-GM crops need to be developed and implemented with the participation of farmers and other stakeholders. According to the principle of 'subsidiarity', decisions should be made by the lowest authority possible. When applying this concept to the case of GM crops, the affected society should determine their use and management in a regional decision-making process. Public participation is better accomplished at a lower level, and democratic deficits in decision-making on GMOs are better resolved, enabling farmers to manage or avoid GM crops. Ultimately, voluntary GMO-free zones might be a tool for sustainable co-existence and GM-free production and GMO-free zones might create a specific image for marketing regional products and services, such as tourism.

Agriculture↗
PubMed2002

Generic values for soil-to-plant transfer factors of radiocesium.

There is a need for soil-to-plant transfer factors of radionuclides that take into account all possible crops on all soil varieties to support dose assessment studies. Because only limited experimental data exist for worldwide soil systems, such values should necessarily have a generic character. This paper describes a generic system for 137Cs, mainly based on a reference soil-to-plant transfer factor which depends solely on soil properties such as nutrient status, exchangeable K-content, pH and moisture content. Crops are divided into crop groups, cereals serving as reference group. The transfer of other crop groups can be calculated by multiplying data for cereals by a conversion factor. Existing data present in the IUR (International Union of Radioecologists) databank and in large part the work of a FAO (Food and Agriculture Organisation)/IAEA(International Atomic Energy Agency)/IUR project on tropical systems provided the basis for the derivation of the conversion factors and reference values.

Cesium Radioisotopes↗
PubMed2026

Expanding the scope of precision editing in seaweeds through the application of a novel CRISPR-associated nuclease 12a-aligned CRISPR system in Ulva prolifera.

Seaweeds, such as the fast-growing green alga Ulva prolifera, can be harnessed as valuable marine crops. The lack of scalable genome-editing tools hampers functional genomics to explore and elucidate algal molecular pathways with industrial importance. Here, we expanded precision genome modification in seaweeds by successfully demonstrating gene editing with a transgene-free AT-rich-targeting CRISPR-associated protein (Cas) system in U. prolifera. By evaluating various delivery buffers, comparing different Cas systems, and optimizing incubation temperatures, we determined suitable conditions for more widespread applicability of a novel Cas12a-aligned ST8 editor. We obtained >50 ST8-mediated knockout mutants of a toxin-based endogenous marker gene, UpAPT, at 28 °C post-delivery incubations. Our work diversified the applicable genome-editing tools in seaweeds, advancing algal functional genomics and providing more strategies to precisely target unexplored seaweed resources.

Ulva↗
PubMed2005

A comparative risk assessment of genetically engineered, mutagenic, and conventional wheat production systems.

Wheat (Triticum aestivum L.) varieties produced using modern biotechnologies, such as genetic engineering and mutagenic techniques, have lagged behind other crop species, but are now being developed and, in the case of mutagenic wheat, commercially grown around the world. Because these wheat varieties have emerged recently, there is a unique opportunity to assess comparatively the potential environmental risks (human health, ecological, and livestock risks) associated with genetically engineered, mutagenic, and conventional wheat production systems. Replacement of traditional herbicides with glyphosate in a glyphosate-tolerant (genetically engineered) wheat system or imazamox in an imidazolinone-tolerant (mutagenic) wheat system may alter environmental risks associated with weed management. Additionally, because both systems rely on plants that express novel proteins, the proteins and plants themselves may impose risks. The purpose of our study was to examine comparatively the multiple aspects of risk associated with different wheat production systems in the US and Canada using the risk assessment paradigm. Specifically, we used tier 1 quantitative and qualitative risk assessment methods to compare specific environmental risks associated with the different wheat production systems. Both glyphosate and imazamox present lower human health and ecological risks than many other herbicides associated with conventional wheat production systems evaluated in this study. The differences in risks were most pronounced when comparing glyphosate and imazamox to herbicides currently with substantial market share. Current weight-of-evidence suggests that the transgenic CP4 EPSPS protein present in glyphosate-tolerant wheat poses negligible risk to humans, livestock, and wildlife. Risk for mutated AHAS protein in imidazolinone-tolerant wheat most likely would be low, but there are not sufficient effect and exposure data to adequately characterize risk. Environmental risks for herbicides were more amenable to quantitative assessments than for the transgenic CP4 EPSPS protein and the mutated AHAS protein.

3-Phosphoshikimate 1-Carboxyvinyltransferase↗
PubMed2004

[Comprehensive evaluation of cultivated black soil fertility].

Black soil is one of the main soil types in northeastern China, and is a valuable soil resource of this country. Based on the analysis of the physical and chemical properties of soil samples collected from the north-south transaction of black soil, the index system of black soil fertility was established, the fertility level was evaluated and classified by Fuzzy and Factor Analysis, and the fertility map of black soil zone was drawn with GIS software ArcInfo. It was found that the humus layer in black soil region was thick in north and thin in south, which was due to the climatic condition and soil-forming process. The soil fertility level was high in east and low in west. From north to south, it was decreased in the order of central part > northern part > south part. In most part of this region, soil fertility level was medium, and the area accounted for 73.6% of the black soil area.

China↗
PubMed2006

[Ecological mechanisms of the effects of vegetation restoration on the controls of non-point source pollution on barren tableland in Dianchi Watershed of China].

Surface runoff, soil erosion and the leaching of the different forms of nitrogen and phosphorus were observed and the hygroscopic volume of branch and leaves of all plant species and soil penetration were determined to understand the ecological mechanisms of the effects of vegetation restoration on the controls of non-point source pollution on barren tableland in Dianchi Watershed of China. Results indicated that there were significantly relationships between surface runoff volume and the output of non-point pollution matters. The different manmade vegetation systems, consisted respectively of A. nepalensis, A. mearnsii, R. pseudoacacia and V. zizanioides clump, had shown the different potentials to control the leaching of TN, TP, soluble TP, soluble TN. Strong hygroscopic functions of leaves and branch was able to promote the interception of rainfalls and give rise to the less of surface runoff. The leaves, that were small, with low water content, no leathery and have rough face and epidermal wools, were able to got the highly ratio of the hygroscopic volume to above ground fresh standing crops and strengthened the interception of forest canopy. Preparing soil, growth of root system of plant and the natural recovery of vegetation at the gap of trees enhanced surface runoff penetration, as lightened the surface runoff leaching the different forms of nitrogen, phosphorus of soil on the stands. The leaching of different forms of nitrogen and phosphorus went down with the controls of surface runoff in different stands as well.

China↗
PubMed2006

Biofortification of staple food crops.

Deficiencies of vitamin A, iron, and zinc affect over one-half of the world's population. Progress has been made to control micronutrient deficiencies through supplementation and food fortification, but new approaches are needed, especially to reach the rural poor. Biofortification (enriching the nutrition contribution of staple crops through plant breeding) is one option. Scientific evidence shows this is technically feasible without compromising agronomic productivity. Predictive cost-benefit analyses also support biofortification as being important in the armamentarium for controlling micronutrient deficiencies. The challenge is to get producers and consumers to accept biofortified crops and increase their intake of the target nutrients. With the advent of good seed systems, the development of markets and products, and demand creation, this can be achieved.

Agriculture↗
PubMed2004

The slow reversibility of photosystem II thermal energy dissipation on transfer from high to low light may cause large losses in carbon gain by crop canopies: a theoretical analysis.

Regulated thermal dissipation of absorbed light energy within the photosystem II antenna system helps protect photosystem II from damage in excess light. This reversible photoprotective process decreases the maximum quantum yield of photosystem II (Fv)/Fm) and CO2 assimilation (phiCO2), and decreases the convexity of the non-rectangular hyperbola describing the response of leaf CO2 assimilation to photon flux (theta). At high light, a decrease in phiCO2 has minimal impact on carbon gain, while high thermal energy dissipation protects PSII against oxidative damage. Light in leaf canopies in the field is continually fluctuating and a finite period of time is required for recovery of phiCO2 and when light drops below excess levels. Low phiCO2) and can limit the rate of photosynthetic carbon assimilation on transfer to low light, an effect prolonged by low temperature. What is the cost of this delayed reversal of thermal energy dissipation and phiCO2 recovery to potential CO2 uptake by a canopy in the field? To address this question a reverse ray-tracing algorithm for predicting the light dynamics of 120 randomly selected individual points in a model canopy was used to describe the discontinuity and heterogeneity of light flux within the canopy. Because photoprotection is at the level of the cell, not the leaf, light was simulated for small points of 10(4) micro m rather than as an average for a leaf. The predicted light dynamics were combined with empirical equations simulating the dynamics of the light-dependent decrease and recovery of phiCO2 and and their effects on the integrated daily canopy carbon uptake (A'c). The simulation was for a model canopy of leaf area index 3 with random inclination and orientation of foliage, on a clear sky day (latitude 44 degrees N, 120th day of the year). The delay in recovery of photoprotection was predicted to decrease A'c by 17% at 30 degrees C and 32% at 10 degrees C for a chilling-susceptible species, and by 12.8% at 30 degrees C and 24% at 10 degrees C for a chilling-tolerant species. These predictions suggest that the selection, or engineering, of genotypes capable of more rapid recovery from the photoprotected state would substantially increase carbon uptake by crop canopies in the field.

Carbon↗
PubMed2006

Spatially targeting Culex quinquefasciatus aquatic habitats on modified land cover for implementing an Integrated Vector Management (IVM) program in three villages within the Mwea Rice Scheme, Kenya.

BACKGROUND: Continuous land cover modification is an important part of spatial epidemiology because it can help identify environmental factors and Culex mosquitoes associated with arbovirus transmission and thus guide control intervention. The aim of this study was to determine whether remotely sensed data could be used to identify rice-related Culex quinquefasciatus breeding habitats in three rice-villages within the Mwea Rice Scheme, Kenya. We examined whether a land use land cover (LULC) classification based on two scenes, IKONOS at 4 m and Landsat Thematic Mapper at 30 m could be used to map different land uses and rice planted at different times (cohorts), and to infer which LULC change were correlated to high density Cx. quinquefasciatus aquatic habitats. We performed a maximum likelihood unsupervised classification in Erdas Imagine V8.7 and generated three land cover classifications, rice field, fallow and built environment. Differentially corrected global positioning systems (DGPS) ground coordinates of Cx. quinquefasciatus aquatic habitats were overlaid onto the LULC maps generated in ArcInfo 9.1. Grid cells were stratified by levels of irrigation (well-irrigated and poorly-irrigated) and varied according to size of the paddy. RESULTS: Total LULC change between 1988-2005 was 42.1 % in Kangichiri, 52.8 % in Kiuria and and 50.6 % Rurumi. The most frequent LULC changes was rice field to fallow and fallow to rice field. The proportion of aquatic habitats positive for Culex larvae in LULC change sites was 77.5% in Kangichiri, 72.9% in Kiuria and 73.7% in Rurumi. Poorly - irrigated grid cells displayed 63.3% of aquatic habitats among all LULC change sites. CONCLUSION: We demonstrate that optical remote sensing can identify rice cultivation LULC sites associated with high Culex oviposition. We argue that the regions of higher Culex abundance based on oviposition surveillance sites reflect underlying differences in abundance of larval habitats which is where limited control resources could be concentrated to reduce vector larval abundance.

Animals↗
PubMed2005

New vectors and marker excision systems mark progress in engineering the plastid genome of higher plants.

The transformation of the plastid genome, until recently restricted to tobacco, is now being extended to a rapidly growing list of crops. This perspective provides an overview of emerging trends of technology development in the field with a focus on vector design and marker excision systems. The new tools will facilitate engineering of the photosynthetic machinery and enable novel agricultural and industrial applications.

Genes, Reporter↗
PubMedDate not supplied

[Nitrate contamination of the groundwater of the Akkar Plain in northern Lebanon].

The Akkar Plain in northern Lebanon covers an area of 130 km2 and is the second largest agricultural region in the country. It also borders the Mediterranean Sea (Figure 1). Groundwater supplies are the only source of drinking water in this region and there is no public drinking water network. This area has a population of about 75,000 inhabitants, who have depended on and used the water from these aquifers for many years, with no treatment, filtration or monitoring system in place. The inhabitants and farmers depend on groundwater supplies for crop irrigation and other uses. The plain provides ideal conditions for agriculture and the use of chemical fertilizers has been increasing. Over-fertilization, resulting in the application of excess nitrogen, and the lack of vegetation during the winter have disturbed the nitrogen cycle, leading to the pollution of groundwater supplies with high concentrations of nitrate. Nitrates seep slowly into the soil at a rate of about 0.5 to 1 meter per year until they reach the water table. However, tons of nitrogen are carried into the groundwater each year by runoff and infiltration. If a water source is found to be heavily contaminated with nitrate, it is probably too late and too difficult to correct the problem within a short period of time. Corrective measures may not be effective, as shown by current high nitrate concentrations despite previous efforts to resolve the problem. Therefore, we must try to keep nitrate levels within acceptable limits. If action is not taken now, future generations will pay the price of current bad practice in agriculture. International water quality guidelines permit a maximum of 50 mg nitrates/l for adults and of 25 mg/l for infants and pregnant women. The intake of nitrates in drinking water by humans is currently one of the major environmental problems associated with agricultural practice. Nitrate is itself inert but concern arises due to its possible conversion into nitrite, which is highly toxic. We analyzed the nitrate content of water samples from 15 private wells currently used for human consumption and agricultural in an effort to deal with the nitrate pollution of groundwater supplies in the Akkar Plain. We found that 14 of the 15 wells had a nitrate concentration above 50 mg/l, with a maximum of 163 mg/l. In addition, salt water was found to have contaminated groundwater supplies in some of the villages along the coastline in the north. Our results indicate that the groundwater is seriously contaminated with nitrates, to the extent that it does not meet international drinking water standards. These high nitrate levels may have adverse effects and cause disease. The toxic effects of nitrate contamination are most severe in individuals with weak immune systems, such as the elderly and children. We are currently developing solutions and preventive measures for this extremely worrying situation, based on these data.

Adult↗
PubMed1992

Forage systems for beef production from conception to slaughter: I. Cow-calf production.

Six year-round, all-forage, three-paddock systems for beef cow-calf production were used to produce five calf crops during a 6-yr period. Forages grazed by cows during spring, summer, and early fall consisted of one paddock of 1) tall fescue (Festuca arundinacea Schreb.)-ladino clover (Trifolium repens L.) or 2) Kentucky blue-grass (Poa pratensis L.)-white clover (Trifolium repens L.). Each of these forage mixtures was combined in a factorial arrangement with two paddocks of either 1) fescue-red clover (Trifolium pratense L.), 2) orchardgrass (Dactylis glomerata L.)-red clover, or 3) orchardgrass-alfalfa (Medicago sativa L.), which were used for hay, creep grazing by calves, and stockpiling for grazing by cows in late fall and winter. Each of the six systems included two replications; each replicate contained 5.8 ha and was grazed by eight Angus cow-calf pairs for a total of 480 cow-calf pairs. Fescue was less than 5% infected with Acremonium coenophialum. Pregnancy rate was 94%. Cows grazing fescue-ladino clover maintained greater (P less than .05) BW than those grazing bluegrass-white clover, and their calves tended (P less than .09) to have slightly greater weaning weights (250 vs 243 kg, respectively). Stockpiled fescue-red clover provided more (P less than .05) grazing days and required less (P less than .05) hay fed to cows than stockpiled orchardgrass plus either red clover or alfalfa. Digestibilities of DM, CP, and ADF, determined with steers, were greater (P less than .05) for the orchardgrass-legume hays than for the fescue-red clover hay. All systems produced satisfactory cattle performance, but fescue-ladino clover combined with fescue-red clover required minimum inputs of harvested feed and maintained excellent stands during 6 yr.

Animal Feed↗