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Simultaneous multislice acquisition using rosette trajectories (SMART): a new imaging method for functional MRI.

A new acquisition technique for rapid, whole-brain functional MRI is presented. In this technique, several slices are simultaneously acquired using rosette k-space trajectories and a gradient-induced frequency modulation. This modulation together with the spectral properties of the rosette acquisition allow all slices to be reconstructed individually. In functional MRI studies, acquisition rates of 16.7 to 25 images/s were achieved, a threefold improvement over single-slice acquisitions. The raw images showed some increase in noise. However, because this increase is mostly stationary, the functional activation maps showed only a slight increase in noise (8%).

Humans↗

Kinetic epitope mapping of the chicken lysozyme.HyHEL-10 Fab complex: delineation of docking trajectories.

The rate constants, k(on), for the formation of hen (chicken) lysozyme (HEWL). Fab-10 complexes have been determined for wild-type (WT) and epitope-mutated lysozymes by a homogeneous solution method based on the 95% reduced enzymatic activity of the complex. The values fall within a narrow 10-fold range [(0.18 to 1.92) x 10(6) M(-1)s(-l)]. The affinity constants, K(D), cover a broader, 440-fold, range from 0.075 to 33 nM. Values of K(D) as high as 7 microM were obtained for the complexes prepared from some mutations at HEWL positions 96 and 97, but the associated kinetic constants could not be determined. The values of k(on) are negatively correlated with side-chain volume at position 101HEWL, but are essentially independent of this parameter for position 21HEWL substitutions. The multiple mutations made at positions 21HEWL and 101HEWL provide sufficient experimental data on complex formation to evaluate phi values [phi = (deltadeltaGon)/(deltadeltaG(D))] at these two positions to begin to define trajectories for protein-protein association. The data, when interpreted within the concept of a two-step association sequence embracing a metastable encounter complex intermediate, argue that the rate determining step at position 21HEWL (phiavg = 0.2) is encounter complex formation, but the larger phi(avg) value of 0.36 experienced for most position 101HEWL mutations indicates a larger contribution from the post-encounter annealing process at this site for these replacements.

Animals↗

Hamming distance geometry of a protein conformational space: application to the clustering of a 4-ns molecular dynamics trajectory of the HIV-1 integrase catalytic core.

Protein structures can be encoded into binary sequences (Gabarro-Arpa et al., Comput Chem 2000;24:693-698) these are used to define a Hamming distance in conformational space: the distance between two different molecular conformations is the number of different bits in their sequences. Each bit in the sequence arises from a partition of conformational space in two halves. Thus, the information encoded in the binary sequences is also used to characterize the regions of conformational space visited by the system. We apply this distance and their associated geometric structures to the clustering and analysis of conformations sampled during a 4-ns molecular dynamics simulation of the HIV-1 integrase catalytic core. The cluster analysis of the simulation shows a division of the trajectory into two segments of 2.6 and 1.4 ns length, which are qualitatively different: the data points to the fact that equilibration is only reached at the end of the first segment. The Hamming distance is compared also to the r.m.s. deviation measure. The analysis of the cases studied so far shows that under the same conditions the two measures behave quite differently, and that the Hamming distance appears to be more robust than the r.m.s. deviation.

Algorithms↗

The trajectories of secondary electrons in the scanning electron microscope.

Three-dimensional simulations of the trajectories of secondary electrons (SE) in the scanning electron microscope have been performed for plenty of real configurations of the specimen chamber, including all its basic components. The primary purpose was to evaluate the collection efficiency of the Everhart-Thornley detector of SE and to reveal fundamental rules for tailoring the set-ups in which efficient signal acquisition can be expected. Intuitive realizations about the easiness of attracting the SEs towards the biased front grid of the detector have shown themselves likely as false, and all grounded objects in the chamber have been proven to influence the spatial distribution of the signal-extracting field. The role of the magnetic field penetrating from inside the objective lens is shown to play an ambiguous role regarding possible support for the signal collection.

Journal Article↗

Individual and ecological assets and positive developmental trajectories among gang and community-based organization youth.

The Search Institute framework for conceptualizing developmental assets was used in a longitudinal study of African American male youth involved in gangs or in community-based organizations (CBOs) serving youth. Analyses of intraindividual change indicated that individual and ecological assets are linked to positive developmental trajectories among these youth.

Achievement↗

Differential trajectories of parent-child relationships and psychosocial adjustment in adolescents.

In this 2-year longitudinal study, trajectories of family development during the second half of adolescence were examined. Cluster analyses of 208 adolescents' reports of family connectedness and individuality yielded three groups: families who were constantly high on connectedness and individuality, families who were high on connectedness and showed an increase in individuality over time and families who were higher on individuality than connectedness at every point in time. Adolescents in the latter group had higher levels of aggressiveness and depressive mood than those in the other two types of families. Findings are discussed with reference to theories of family individuation in adolescence.

Adolescent↗

Trajectory Analysis and Collision Efficiency during Microbubble Flotation.

The hydrodynamic interaction between a rising bubble and a sedimenting particle during microbubble flotation is considered. The effects of attractive van der Waals forces and attractive or repulsive electrostatic forces are included. A mathematical model is presented which is used to perform a trajectory analysis and to calculate collision efficiencies between the bubble and particle. It is shown that collision efficiencies and the nature of the bubble-particle interactions are strongly dependent on the relative strengths of the van der Waals and electrostatic forces and on the lengthscales over which these forces act. It is demonstrated that optimal operating conditions can be suggested to achieve efficient microbubble flotation by correctly accounting for the interaction of van der Waals, electrostatic, and hydrodynamic forces. Copyright 1999 Academic Press.

Journal Article↗

Random Trajectory Modeling of Limited-Volume Percolation in a Microporous Structure.

The limited-volume analytical method for the evaluation of the probability of percolation (random trajectory approach) is developed. The model uses probabilistic analysis of possible percolation ways. The main equation for the probability of percolation contains parameters related to the conditions of formation of the microporous medium. Results of some computer estimations of the influence of various formation-related parameters (porosity, surface tension, coordination number, etc.) are presented. Copyright 2001 Academic Press.

Journal Article↗

Simple correction method for k-space trajectory deviations in MRI.

A method is presented to correct for the imperfections of spatial encoding gradients in MRI. The approach is simple and fast, can be performed with standard scanner hardware, and does not require separate measurements with reference phantoms. The new method, using the MR signal to accurately measure the k-space trajectory of the imaging sequence, allows for correction of gradient hardware imperfections and eddy-current effects. Initial measurements are presented which demonstrate the efficacy of the method to correct images acquired with spiral and EPI scan techniques.

Algorithms↗

3D freehand ultrasound reconstruction based on probe trajectory.

3D freehand ultrasound imaging is a very attractive technique in medical examinations and intra-operative stage for its cost and field of view capacities. This technique produces a set of non parallel B-scans which are irregularly distributed in the space. Reconstruction amounts to computing a regular lattice volume and is needed to apply conventional computer vision algorithms like registration. In this paper, a new 3D reconstruction method is presented, taking explicitly into account the probe trajectory. Experiments were conducted on different data sets with various probe motion types and indicate that this technique outperforms classical methods, especially on low acquisition frame rate.

Algorithms↗

Optimal trajectories computation within regions of interest for hepatic RFA planning.

Percutaneous radiofrequency ablation has become a frequently used technique for the treatment of liver cancers, but still remains very difficult to plan. In this paper, we propose a robust method to delineate on the skin of a 3D reconstructed patient the zones that are candidate for an insertion, because they allow a safe access to the tumor without meeting any organ, and to compute automatically within these zones an optimal trajectory minimizing the volume of necrosis covering the tumor.

Algorithms↗

Adaptation to Coriolis force perturbation of movement trajectory; role of proprioceptive and cutaneous somatosensory feedback.

Subjects exposed to constant velocity rotation in a large fully-enclosed room that rotates initially make large reaching errors in pointing to targets. The paths and endpoints of their reaches are deviated in the direction of the transient lateral Coriolis forces generated by the forward velocity of their reaches. With additional reaches, subjects soon reach in straighter paths and become more accurate at landing on target even in the absence of visual feedback about their movements. Two factors contribute to this adaptation: first, muscle spindle and golgi tendon organ feedback interpreted in relation to efferent commands provide information about movement trajectory, and second, somatosensory stimulation of the fingertip at the completion of a reach provides information about the location of the fingertip relative to the torso.

Acceleration↗

Layer VII and the gray matter trajectories of corticocortical axons in rats.

The trajectory of long distance intrahemispheric corticocortical axons has been investigated using the anterograde fluorescent axonal tracer fluororuby. Most axons of this kind were found to travel through the gray matter of layers VI and VII rather than in the white matter. The cell-sparse zone immediately superficial to layer VII contains a dense aggregate of longitudinally directed axons. Corticocortical axons traveling in the mediolateral plane also utilize the deep gray matter predominately. Layer VII neurons are persistent remnants of the subplate in rats. Based on our retrograde labeling results, they are involved in long distance as well as local corticocortical connections. Layer VII neurons are often labeled in a more continuous pattern after cortical injections of retrograde tracers than neurons of layers II, III and V, which are labeled in a patchy manner.

Animals↗

Postural maintenance during fast forward bending: a model simulation experiment determines the "reduced trajectory".

A recent article by Crenna et al. (1987) has shown that fast, forward bending movements are accompanied by a backwards motion of the hips and lower limbs. The ongoing research presented in this brief note expands upon the experimental data described by Crenna and colleagues, concerning the postural activities associated with rapid forward bending in standing man. Our primary experimental tool is the computer simulation method, with the standing subject being represented by a double-joint system: the trunk is modeled as a rigid link mechanically coupled (via a "hip" joint) to the lower body link fixed to the ground (via an "ankle" joint). Each of the two joints in this system is independently controlled by a neurological control model for single joint movements, consisting of an idealized pair of antagonistic muscles (flexor and extensor), their common load, and proprioception from the muscle spindles. This model thereby integrates descending commands with proprioceptive feedback in controlling the joint movements. Our early simulation experiments determine a "reduced trajectory", that is, the physical perturbation to the postural system, due to the voluntary movement, in the absence of any stabilizing activities. These simulation experiments clearly show that an important component of the backward movements in the hips and lower limbs during forward bending is indeed due to the mechanical (physical) coupling between the upper and lower body segments and thus not solely a consequence of the anticipatory postural muscle activity. Simulations also predict that any postural activities in the hips and lower limbs should be a two-fold process: first, some preprogrammed, descending control to the lower body would be required to actively enhance the passive, backwards motion (this is consistent with, though not strictly identical to, the hypothesis of Crenna and colleagues); secondly, there must be a subsequent activation in the anterior muscles of the lower body in order to arrest this backwards motion, since otherwise the uncountered momentum would carry the body backward to the floor in less than half a second after the upper body movement has terminated.

Computer Simulation↗

Axonal trajectories of single Forel's field H neurones in the mesencephalon, pons and medulla oblongata in the cat.

We studied axonal trajectories of single Forel's field H (FFH) neurones (n = 19) in the mesencephalon, pons and medulla by systematic antidromic threshold mapping in cats and differentiated them into two major types. Type I neurones were characterized by projections to the oculomotor nucleus (IIIn) and type II neurones by lack of projections to the IIIn. 2. Type I neurones (11/19) were further classified into three subtypes by the lowest level of projections; type Ic (n = 3) which projected to the cervical cord and type Ib (n = 7) which terminated at the ponto-medullary level and type Ia (n = 1) at more rostral level. In the mesencephalon, stem axons passed just lateral to the IIIn and projected collaterals to the IIIn and the ventral part of the periaqueductal gray matter. In the lower brain stem, stem axons of type Ib and Ic neurones passed in the dorsal part of the reticular formation or in the medial longitudinal fasciculus and projected collaterals to the dorsal part of the nucleus reticularis pontis caudalis (NRPC) and the nucleus reticularis gigantocellularis (NRG) and the reticular formation underlying the nucleus prepositus hypoglossi (PH) and the raphe region. Projections to the superior colliculus were observed in two cases. 3. Type II neurones (8/19) were classified into 2 type IIb projecting to the ponto-medullary reticular formation and 6 type IIc projecting to the cervical spinal cord. In the mesencephalon, stem axons passed through a more lateral region than those of type I and projected collaterals to the mesencephalic reticular formation and the red nucleus. In the lower brain stem, the stem axons passed in the ventral part of the reticular formation corresponding to the central tegmental tract and projected collaterals to the ventral part of the NRPC and NRG. Projections to the interstitial nucleus of Cajal, the inferior olive and the reticular formation underlying the PH were also observed. 4. The dorsal and ventral location of, respectively, stem axons of type I and type II neurones in the lower brain stem was confirmed in a larger number of neurones in experiments with restricted mapping. 5. There was not much difference in location of cell bodies of type I (totally n = 50) and type II (n = 46) neurones. The proportion of spinal-projecting neurones were larger in type II (21/46, 46%) than in type I (7/50, 14%) neurones.

Animals↗

Trajectories of reaches to prismatically-displaced targets: evidence for "automatic" visuomotor recalibration.

The present study examined the kinematics of unrestricted reaches to prismatically-displaced targets. The kinematic analysis allowed us (1) to document how and where in the reach adjustments were made to compensate for the prismatic displacement. (2) to detail the changes that occur in the characteristics of reaches during the course of adaptation to the prisms, and (3) to look at the effects of providing information (or not) to the subject about the presence and nature of the prismatic distortion. The experiment differed from classic studies of prism adaptation in that subjects were permitted full visual feedback of their moving limb at all times, and entire reaching movements were recorded in addition to terminal errors. Experimental subjects were tested either with large-displacement prisms of the sort typically used in such experiments (20 diopters) or with small-displacement prisms (5 diopters) the properties of which went undetected in uninformed subjects. By using small displacements, it was possible to examine the process of visuomotor recalibration directly, free of contamination by "conscious" correction strategies. There were no differences in the terminal accuracies of the reaches made by subjects in any of the conditions. The availability of visual feedback allowed subjects to place their finger accurately on the target, despite the fact that in some cases their vision was displaced by as much as 11.4 degrees to the right. When the entire reach was examined, however, it was found that the amount of curvature in the path increased when large or small diopter prisms were unexpectedly introduced, with the subjects showing large deviations to the right. This rightward deviation was corrected in the final approach with a larger terminal correction. On some occasions, nonetheless, corrections were observed very early in the course of the reaching movement and appeared to be part of a natural process of trajectory fine-tuning. Uninformed subjects exposed to either large or small prismatic displacements also showed evidence of adaptation through an increased number of on-line corrections which compensated for a tendency to reach into the side of space opposite to the direction of the displacement (a "negative after-effect" in the path of the reach). Moreover, when questioned after the experiment, it became clear that uninformed subjects exposed to small prismatic displacements had apparently failed to detect any visual displacement whatsoever. Taken together, these results suggest that visuomotor recalibration can take place "automatically" without feedback from terminal errors and without the use of conscious strategies.(ABSTRACT TRUNCATED AT 400 WORDS)

Adaptation, Physiological↗

Axonal trajectories of inhibitory vestibulocollic neurons activated by the anterior semicircular canal nerve and their synaptic effects on neck motoneurons in the cat.

Somatic location, axonal trajectories and synaptic effects of inhibitory vestibulocollic neurons which were activated by selective stimulation of the anterior semicircular canal nerve (ACN) were studied in the anesthetized cat. ACN stimulation evoked disynaptic inhibitory postsynaptic potentials (IPSPs) in neck flexor motoneurons. This was seen in all the (64/64) tested motoneurons innervating the ipsilateral (i-) longus capitis (LC) and the i-sternocleidomastoideus (SCM) muscles and in 86% (38/44) of the motoneurons innervating the contralateral (c-) LC muscle. The inhibitory relay neurons, identified by orthodromic and antidromic responses to stimulation of the ACN and the i- and c-LC motoneuron pools, were classified as VCi (vestibulocollic neurons sending an axon to the i-LC motoneuron pool) and VCc (vestibulocollic neurons sending an axon to the c-LC motoneuron pool) neurons. Neither VCi nor VCc neurons were activated antidromically by localized stimulation of the ascending medial longitudinal fasciculus (asc. MLF) or the 3rd nuclei. They were located in the medial, descending and ventral lateral vestibular nuclei. It was also observed that VCi neurons produced unitary IPSPs in i-LC and i-SCM motoneurons in the C1 segment. Inhibitory synapses were estimated to be on the cell somata and/or the proximal dendrites of the motoneurons.

Animals↗

The role of active forces and intersegmental dynamics in the control of limb trajectory over obstacles during locomotion in humans.

The focus of this paper is to examine the contributions of active and passive forces in the control of limb trajectory over obstacles during locomotion. Kintetic analyses of the swing phase of locomotion were carried out to determine the power profiles at various joints and to parcel the joint moments into moments due to muscle action, gravitational force and motion-dependent terms. The analyses revealed that toe elevation over the obstacles was achieved primarily by flexing at the hip, knee and ankle joint. Power analyses showed that translational energy applied at the hip joint and rotational energy applied at the knee joint were modulated as functions of obstacle height. This demonstrates that increased hip and ankle joint flexion are achieved not through active muscle action but rather through passive forces induced by translational action at the hip (representing contribution by the stance limb muscles) and rotational action at the knee joint. Parcelling the joint moment terms into various components clearly shows how the nervous system exploits intersegmental dynamics to simplify control of limb elevation over obstacles and minimize energy costs.

Adult↗