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Adaptive site selection rules and variation in group size of barn swallows: individual decisions predict population patterns.

Variation in group size is ubiquitous among socially breeding organisms. An alternative to the traditional examination of average reproductive success in groups of different sizes is to examine individual decision making by determining the cues used for site selection. Once factors used for decision making are known, one can determine whether group-level patterns, such as group size variation, are emergent properties of individual-level decision rules. The advantage of this alternative approach is that it can explain the distribution of group sizes rather than just the occurrence of optimal group sizes. Using barn swallows, I tested, but did not support, the hypothesis that individuals settle at sites based on the previous success of conspecifics (i.e., performance-based conspecific attraction). Instead, I demonstrate that an adaptive site selection decision rule--to breed where it is possible to reuse previously constructed nests--predicts 83% of the variation in the number of breeding pairs at a site. Furthermore, experimental nest removals demonstrated that settlement decisions are also strongly influenced by site familiarity. I discuss the interaction of the cue-based site selection rule with the occurrence of site fidelity and how, more generally, a consideration of individual-level decision rules can improve our understanding of variation in many social behaviors.

Animals↗

Type, density, and location of immune cells within human colorectal tumors predict clinical outcome.

The role of the adaptive immune response in controlling the growth and recurrence of human tumors has been controversial. We characterized the tumor-infiltrating immune cells in large cohorts of human colorectal cancers by gene expression profiling and in situ immunohistochemical staining. Collectively, the immunological data (the type, density, and location of immune cells within the tumor samples) were found to be a better predictor of patient survival than the histopathological methods currently used to stage colorectal cancer. The results were validated in two additional patient populations. These data support the hypothesis that the adaptive immune response influences the behavior of human tumors. In situ analysis of tumor-infiltrating immune cells may therefore be a valuable prognostic tool in the treatment of colorectal cancer and possibly other malignancies.

CD3 Complex↗

Gene from tropical Bacillus sphaericus encoding a protease closely related to subtilisins from Antarctic bacilli.

We undertook to identify the protease(s) involved in the in vivo degradation of the 100 kDa mosquitocidal toxin (Mtx) from Bacillus sphaericus SSII-1 and isolated a B. sphaericus SSII-1 gene flanked upstream by a typical Shine-Dalgarno ribosome binding site and downstream by a strong rho-independent transcription terminator. The predicted ORF encodes a 432 amino acid protein with significant homology throughout its sequence to two subtilisin-like serine proteases from the Antarctic psychrophilic (cold-adapted) bacilli, TA39 and TA41. The predicted N-terminal sequence suggests that the B. sphaericus protease is related to sfericase, a partially characterized serine protease from B. sphaericus. Only B. sphaericus strains which produce Mtx-degrading protease activity harbour the subtilisin-like protease gene, suggesting that this protease may be responsible for or contribute to the degradation of Mtx in B. sphaericus SSII-1. A 36-kDa protease with Mtx-degrading activity and similar properties to sfericase was also purified from sporulated cultures of B. sphaericus SSII-1. Further studies are needed to determine the relationship of this protease to sfericase and to the predicted product of the subtilisin-like serine protease gene.

Amino Acid Sequence↗

Spectral sensitivity and adaptation characteristics of cone mechanisms under white-light adaptation.

Increment-threshold spectral-sensitivity (ITSS) functions and threshold-versus-intensity (tvi) curves were measured under white-light adaptation in rhesus monkeys. The tvi curves showed shape and test wavelength invariance, implying that three cone mechanisms were mediating detection. In general, the results were in agreement with the differential adaptation hypothesis proposed by Stiles that predicted spectral shape invariance of the cone mechanisms but overall changes in the shape of the spectral-sensitivity function with increases in the intensity of the adapting field. The principal changes occurring in the ITSS function as the level of adaptation increased involved a smaller loss in sensitivity of the short-wavelength and the long-wavelength peaks compared with the corresponding loss in sensitivity of the middle-wavelength peak. A three-channel model with an opponent L-M mechanism and a nonopponent L-M mechanism (both with S-cone input) and an independent S-cone mechanism described the ITSS data as well as other increment-threshold and suprathreshold data. The model values for the ITSS functions, along with parameters derived from the transformation of these data to cone-contrast coordinates, permitted the factoring out of first-site adaptation, second-site adaptation, and the relative strengths of contribution of the L and M cones within the opponent and nonopponent L-M channels.

Adaptation, Ocular↗

Computer-assisted structure-activity relationships of nitrogenous cyclic compounds tested in salmonella assays for mutagenicity.

Study of the relationship between mutagenicity and molecular structure for a data set of nitrogenous cyclic compounds is reported. A computerized SAR system (ADAPT) was utilized to classify a data set of 114 nitrogenous cyclic compounds with 19 molecular descriptors. All of the descriptors represented at least 10% of the compounds in the data sets. The average correct predictability of the data base was calculated to be 89% after evaluating 100 training/prediction subsets. The actual predictive ability of the discriminants generated by the ADAPT system was demonstrated by predicting the mutagenicity of structurally similar compounds not in the data set. Weight vectors generated in the pattern recognition programs were used to predict the bacterial mutagenicity of 10 compounds which were not included in the data set. All of the compounds were predicted correctly which was actually better than the 89% calculated by the system. This displayed the ability of the system of classify compounds as mutagenic or nonmutagenic by using molecular descriptors and to predict the biological activity of untested chemicals with a high degree of confidence. This paper presents the uses of this type of SAR approach in a research laboratory.

Heterocyclic Compounds↗

Increased reproductive effort results in male-biased offspring sex ratio: an experimental study in a species with reversed sexual size dimorphism.

Adaptive sex-ratio theory predicts that parents should overproduce the more beneficial offspring sex. Based on a recent experimental study of lesser black-backed gulls, we tested this hypothesis with the great skua, Catharacta skua, a bird species closely related to gulls but where females are the larger sex. When in poor body condition, the gulls overproduced daughters, the smaller and more viable sex under those circumstances. To discriminate between a mandatory physiological overproduction of female (i.e. non-male) eggs versus the overproduction of the smaller and presumably more viable sex, we conducted an egg-removal experiment with the great skua. Since the males are smaller, larger size and being male are separated. Through egg removal we induced females to increase egg production effort. Eggs were sexed using a DNA-based technique. Manipulated pairs produced a significant male bias at the end of the extended laying sequence, while the sex ratio in the control group did not differ from unity. Our results present an example of facultative sex-ratio manipulation and support the hypothesis that in sexually dimorphic birds parents overproduce the smaller sex under adverse conditions.

Adaptation, Physiological↗

Compression of carbon nanotubes filled with C60, CH4, or Ne: predictions from molecular dynamics simulations.

The effect of filling nanotubes with C60, CH4, or Ne on the mechanical properties of the nanotubes is examined. The approach is classical molecular dynamics using the reactive empirical bond order (REBO) and the adaptive intermolecular REBO potentials. The simulations predict that the buckling force of filled nanotubes can be larger than that of empty nanotubes, and the magnitude of the increase depends on the density of the filling material. In addition, these simulations demonstrate that the buckling force of empty nanotubes depends on temperature. Filling the nanotube disrupts this temperature effect so that it is no longer present in some cases.

Journal Article↗

Endurance vs. strength training: comparison of cardiac structures using normal predicted values.

There are still disagreements concerning the adaptation of cardiac structures in relation to different training stimuli. To eliminate some of the variance due to individual differences in body surface area, we utilized a new approach based on the calculation of the percentages of each individual's normal predicted values (%NPV). We studied 46 strength (S, bodybuilders) and 57 endurance (E, runners) athletes. Left ventricular (LV) mass was 143.8 +/- 21.9 %NPV (mean +/- SD) in E vs. 134.3 +/- 23.4 %NPV in S (P less than 0.05), and LV volume was 131.0 +/- 24.0 %NPV in E vs. 120.0 +/- 25.5 %NPV in S (P less than 0.05). Moreover, the LV wall thickness-to-radius ratio did not differ from normal values in either group. From these data we conclude that 1) cardiac modifications are greater in E than S, 2) the predominant stimulus is a volume overload type in both groups, and 3) concentric LV hypertrophy may not be as prevalent in S as previously suggested.

Adult↗

Relationships between the A priori and A posteriori errors in nonlinear adaptive neural filters.

The lower bounds for the a posteriori prediction error of a nonlinear predictor realized as a neural network are provided. These are obtained for a priori adaptation and a posteriori error networks with sigmoid nonlinearities trained by gradient-descent learning algorithms. A contractivity condition is imposed on a nonlinear activation function of a neuron so that the a posteriori prediction error is smaller in magnitude than the corresponding a priori one. Furthermore, an upper bound is imposed on the learning rate eta so that the approach is feasible. The analysis is undertaken for both feedforward and recurrent nonlinear predictors realized as neural networks.

Algorithms↗

Modulation of cerebellar activation by predictive and non-predictive sequential finger movements.

We investigated the modulation of cerebellar activation by predictive and non-predictive sequential finger movements. It is hypothesized that the prediction of desired movement sequences and adaptation to new movement parameters is mediated by the cerebellum. Using functional MRI at 1.5 T, seven normal subjects performed sequential finger to thumb opposition movements, either in predictive (repeatedly 2,3,4,5) or non-predictive (randomized) fashion at a constant frequency of 1 Hz. Performance and error rates were monitored by simultaneous recording of the finger movements. Predictive sequential finger opposition movements activated a cerebellar network including the lobuli IV-VI ipsilateral to the movements, the contralateral lobuli IV-VI, the vermis, and lobuli VIIB-VIII ipsilaterally. Non-predictive compared to predictive finger opposition movements activated a broader area within the ipsi- and contralateral anterior cerebellum, lobuli IV-VI, the vermis, and the ipsilateral lobuli VIIB-VIII. Additional activation foci were found in the contralateral lobuli VIIA and VIIB-VIII. Our study demonstrates a modulated information processing within the cerebellar network dependent on the predictability of movement sequences.

Brain Mapping↗

How rapidly can maternal behavior affecting primary sex ratio evolve in a reptile with environmental sex determination?

Theoretical models identify maternal behavior as critical for the maintenance and evolution of sex ratios in organisms with environmental sex determination (ESD). Maternal choice of nest site is generally thought to respond more rapidly to sex ratio selection than environmental sensitivity of offspring sex (threshold temperatures) in reptiles with temperature-dependent sex determination (TSD, a form of ESD). However, knowledge of the evolutionary potential for either of these traits in a field setting is limited. I developed a simulation model using local climate data and observed levels of phenotypic variation for nest-site choice and threshold temperatures in painted turtles (Chrysemys picta) with TSD. Both nest-site choice and threshold temperatures, and hence sex ratios, evolved slowly to simulated climate change scenarios. In contrast to expectations from previous models, nest-site choice evolved more slowly than threshold temperatures because of large climatic effects on nest temperatures and indirect selection on maternally expressed traits. A variant of the model, assuming inheritance of nest-site choice through natal imprinting, demonstrated that natal imprinting inhibited adaptive responses in female nest-site choice to climate change. These results predict that females have relatively low potential to adaptively adjust sex ratios through nest-site choice.

Animals↗

[A simple description of color adaptation in the red-green system].

The red/green-system is examined experimentally under adaptation to green and to magenta. The theoretical basis consists of Grassmann's laws and of a new linear opponent colors theory. Besides brightness, this opponent colors theory specifies the two chromatic axes yellow-blue and green-magenta within color space. An axiom is formulated for the description of color adaptation for the red/green-system. Two pairs of color vectors are assumed to be equivalent with respect to the red/green-system if the quotients of the respective red/green-coordinates of test vector and adaptation vector are identical. For both vectors the control of the other two opponent colors systems is presupposed. The axiom is tested for four green and four magenta adaptation vectors. Three observers take part in the experiment. For each observer an individual plane of constant brightness and his or her individual opponent colors axes are estimated experimentally. For both magenta and green adaptation the data agree well with the theoretical predictions. Thus they provide empirical support for the axiom. For the red/green-system color adaptation can be described very simply if the other two opponent colors systems are controlled.

Adaptation, Ocular↗

Roles of the cerebellum in pursuit-vestibular interactions.

This mini-review focuses on cerebellar roles in on-line control of smooth-pursuit eye movements during vestibular stimulation in primates. The smooth-pursuit system is necessary to track smoothly moving targets and must interact with the vestibular system during movement of the head and/or whole body to maintain the precision of eye movements in space (i.e. gaze movements). This interaction requires calculation of gaze velocity commands that match the eye velocity in space to the actual target velocity. Two cerebellar regions, the floccular lobe that consists of the flocculus and ventral paraflocculus, and the dorsal vermis, are known to be involved in smooth-pursuit. However, potential differences in their involvement are incompletely understood. To understand their roles, in particular whether the output of these regions codes gaze velocity or eye velocity, simple-spike activity of Purkinje (P-) cells was examined during smooth-pursuit and pursuit-vestibular interaction tasks in various directions in head-restrained monkeys. The results showed differences in discharge characteristics of vertical and horizontal P-cells within the floccular lobe and between the floccular lobe and dorsal vermis. These differences and other available evidence suggest that the dorsal vermis is involved more in the control of gaze movement whereas the floccular lobe primarily controls eye movement (in the orbit) as a component of the oculomotor neural integrator. Smooth-pursuit without vestibular stimulation cannot dissociate eye movement from gaze movement. To understand the cerebellar role in various aspects of smooth tracking of targets moving in the three dimensional space, more information is needed particularly on how the above mentioned two regions along with the dorsal paraflocclus and underlying deep cerebellar nuclei are involved in vergence tracking, how the cerebellum is involved in prediction and perception of target motion, and whether complex-spike discharge is involved in a fast adaptive process that may be used for prediction in smooth ocular tracking.

Action Potentials↗

Isozymes and allozymes: alternate forms of protein adaptation?

The hypothesis is put forward that constant or predictable environments will select for multiple locus enzymes (isozymic variation) while variable or nonpredictable environments will select for multiple alleles at single loci (allozymic variation). If this hypothesis is valid, isozymes and allozymes should represent alternative forms of enzyme adaptation and the levels of the two types of variation should be negatively correlated. This prediction was tested from data reported in the literature for five groups of organisms: mammals, other vertebrates, insects, other invertebrates and plants. Single substrate enzymes showed the predicted negative relationship between allozymic and isozymic variation. Multiple substrate enzymes did not show a significant relationship. Isozymic variation was greater for insects, other invertebrates and plants, in multiple substrate enzymes compared to single substrate enzymes. For mammals and vertebrates, allozymic variation for multiple substrate enzymes was approximately double that of single substrate enzymes, while isozymic variation remained constant.

Alleles↗

Indirect calorimetry in the nutritional management of eating disorders.

The caloric prescription, a key component of the nutritional therapy of anorexia nervosa (AN) and bulimia nervosa (BN), may be empirically prescribed, or based on predicted resting energy expenditure (REE), yet adaptive changes in the metabolic rate may render both methods unreliable. Indirect calorimetry measurement of fasting REE was obtained in 32 patients with AN (n = 21) or BN (n = 11). Predicted REE was calculated according to the Harris-Benedict equation, and empiric caloric prescriptions were made by experienced physicians. In the AN group, mean measured REE was significantly lower than predicted REE (p = .00). The empiric caloric prescription was, as intended, significantly higher than the measured REE, but the two methods correlated significantly (r = .53, p < .05). The predicted REE overestimated caloric needs but was also highly correlated with measured REE (r = .69, p < .001). By regression analysis, measured REE could be calculated from predicted REE as follows: measured REE (Kcal/day) = (1.84 x Harris-Benedict predicted REE) - 1,435. In the BN group, mean measured REE was not significantly different from the empiric caloric prescription (p = .09) but was significantly lower than the Harris-Benedict predicted REE (p = .022). Neither correlated with measured REE in BN. Therefore, in BN indirect calorimetry is the only reliable method for determining caloric needs. In AN indirect calorimetry remains the preferred method, but when not available, we recommend the above equation to determine resting energy requirements.

Adolescent↗

Somatosensory control of precision grip during unpredictable pulling loads. I. Changes in load force amplitude.

In manipulating 'passive' objects, for which the physical properties are stable and therefore predictable, information essential for the adaptation of the motor output to the properties of the current object is principally based on 'anticipatory parameter control' using sensorimotor memories, i.e., an internal representation of the object's properties based on previous manipulative experiences. Somatosensory afferent signals only intervene intermittently according to an 'event driven' control policy. The present study is the first in a series concerning the control of precision grip when manipulating 'active' objects that exert unpredictable forces which cannot be adequately represented in a sensorimotor memory. Consequently, the manipulation may be more reliant on a moment-to-moment sensory control. Subjects who were prevented from seeing the hand used the precision grip to restrain a manipulandum with two parallel grip surfaces attached to a force motor which produced distally directed (pulling) loads tangential to the finger tips. The trapezoidal load profiles consisted of a loading phase (4 N/s), plateau phase and an unloading phase (4 N/s) returning the load force to zero. Three force amplitudes were delivered in an unpredictable sequence; 1 N, 2 N and 4 N. In addition, trials with higher load rate (32 N/s) at a low amplitude (0.7 N), were superimposed on various background loads. The movement of the manipulandum, the load forces and grip forces (normal to the grip surfaces) were recorded at each finger. The grip force automatically changed with the load force during the loading and unloading phases. However, the grip responses were initiated after a brief delay. The response to the loading phase was characterized by an initial fast force increase termed the 'catch-up' response, which apparently compensated for the response delay--the grip force adequately matched the current load demands by the end of the catch-up response. In ramps with longer lasting loading phases (amplitude greater than or equal to 2 N) the catch-up response was followed by a 'tracking' response, during which the grip force increased in parallel with load force and maintained an approximately constant force ratio that prevented frictional slips. The grip force during the hold phase was linearly related to the load force, with an intercept close to the grip force used prior to the loading. Likewise, the grip force responses evoked by the fast loadings superimposed on existing loads followed the same linear relationship.(ABSTRACT TRUNCATED AT 400 WORDS)

Adult↗

Fish assemblage responses to water withdrawals and water supply reservoirs in Piedmont streams.

Understanding effects of flow alteration on stream biota is essential to developing ecologically sustainable water supply strategies. We evaluated effects of altering flows via surface water withdrawals and instream reservoirs on stream fish assemblages, and compared effects with other hypothesized drivers of species richness and assemblage composition. We sampled fishes during three years in 28 streams used for municipal water supply in the Piedmont region of Georgia, U.S.A. Study sites had permitted average withdrawal rates that ranged from < 0.05 to > 13 times the stream's seven-day, ten-year recurrence low flow (7Q10), and were located directly downstream either from a water supply reservoir or from a withdrawal taken from an unimpounded stream. Ordination analysis of catch data showed a shift in assemblage composition at reservoir sites corresponding to dominance by habitat generalist species. Richness of fluvial specialists averaged about 3 fewer species downstream from reservoirs, and also declined as permitted withdrawal rate increased above about 0.5 to one 7Q10-equivalent of water. Reservoir presence and withdrawal rate, along with drainage area, accounted for 70% of the among-site variance in fluvial specialist richness and were better predictor variables than percent of the catchment in urban land use or average streambed sediment size. Increasing withdrawal rate also increased the odds that a site's Index of Biotic Integrity score fell below a regulatory threshold indicating biological impairment. Estimates of reservoir and withdrawal effects on stream biota could be used in predictive landscape models to support adaptive water supply planning intended to meet societal needs while conserving biological resources.

Animals↗

The study of lifetime of polymer and composite bone joint screws under cyclical loads and in vitro conditions.

The "strain-life time" method has been adapted for life-time prediction of polymer and composite bone joint screws. Mechanical and fatigue properties of screws made of biostable (polysulfone), biosorbable (poly(lactide-co-glycolide) and short carbon fibre reinforced polymer composite materials have been examined in this study. The lifetime predictions under in vitro conditions were calculated for polymer and composite implants. The forecasting of joint screws stability under conditions close to natural body environment is shown to be feasible based on equations describing lifetime of the examined joint screws.

Analysis of Variance↗