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PubMed2006

Formation of methane hydrate from polydisperse ice powders.

Neutron diffraction runs and gas-consumption experiments based on pressure-volume-temperature measurements are conducted to study the kinetics of methane hydrate formation from hydrogenated and deuterated ice powder samples in the temperature range of 245-270 K up to high degrees of transformation. An improved theory of the hydrate growth in a polydisperse ensemble of randomly packed ice spheres is developed to provide a quantitative interpretation of the data in terms of kinetic model parameters. This paper continues the research line of our earlier study which was limited to the monodisperse case and shorter reaction times (Staykova et al., 2003). As before, we distinguish the process of initial hydrate film spreading over the ice particle surface (stage I) and the subsequent hydrate shell growth (stage II) which includes two steps, i.e., an interfacial clathration reaction and the gas and water transport (diffusion) through the hydrate layer surrounding the shrinking ice cores. Although kinetics of hydrate formation at stage II is clearly dominated by the diffusion mechanism which becomes the limiting step at temperatures above 263 K, both steps are shown to be essential at lower temperatures. The permeation coefficient D is estimated as (1.46 +/- 0.44) x 10(-12) m2/h at 263 K with an activation energy Q(D) approximately 52.1 kJ/mol. This value is close to the energy of breaking hydrogen bonds in ice Ih and suggests that this process is the rate-limiting step in hydrate formation from ice in the slower diffusion-controlled part of the reaction.

Journal Article↗
PubMed2006

Reassessment of large dipole moment enhancements in crystals: a detailed experimental and theoretical charge density analysis of 2-methyl-4-nitroaniline.

The molecular dipole moment of MNA in the crystal has been critically reexamined, to test the conclusion from an earlier experimental charge density analysis that it was substantially enhanced due to a combination of strong intermolecular interactions and crystal field effects. X-ray and neutron diffraction data have been carefully measured at 100 K and supplemented with ab initio crystal Hartree-Fock calculations. Considerable care taken in the measurement and reduction of the experimental data excluded most systematic errors, and sources of error and their effects on the experimental electron density have been carefully investigated. The electron density derived from a fit to theoretical structure factors assisted in the determination of the scale and thermal motion model. The dipole moment enhancement for MNA in the crystal is much less than that reported previously and only on the order of 30-40% (approximately 2.5 D). In addition to the dipole moment, experimental deformation electron density maps, bond critical point data, electric field gradients at hydrogen nuclei, and atomic and group charges all agree well with theoretical results and trends. Anisotropic modeling of the motion of hydrogen atoms, integral use of periodic ab initio calculations, and improved data quality are all aspects of this study that represent a considerable advance over previous work.

Journal Article↗
PubMed2006

A neutron scattering and nuclear magnetic resonance study of the structure of GeO2-P2O5 glasses.

Germanophosphate (GeO2-P2O5) glasses were studied with neutron diffraction, phosphorus, and oxygen nuclear magnetic resonance, calorimetry, viscosity measurements, and first-principles calculations. These data sets were combined to propose a structural model of GeO2-P2O5 glasses, which includes tetrahedrally coordinated phosphorus, formation of octahedrally coordinated germanium as P2O5 content increases, an absence of trigonally coordinated oxygen, and hence an absence of rutile-like GeO2 domains. The structural model was then used to propose explanations for both the observed composition dependence of the glass transition temperature and the fragility of the GeO2-P2O5 liquids.

Journal Article↗
PubMed2006

Absence of long-range magnetic order in the La1.4Sr0.8Ca0.8Mn2O7 bilayered manganite.

This paper presents the results of a high-resolution neutron diffraction and magnetometry investigation on the optimally doped (x = 0.3) La(1.4)Sr(0.8)Ca(0.8)Mn(2)O(7) bilayered manganite. In particular, two samples with different oxygen contents have been studied to put in prominence the role of the Mn average valence states at fixed cation concentration. The results show, for the first time, the absence of long-range magnetic order in this optimally doped manganite when the A-site of the structure is doped with equal proportions of isovalent Ca and Sr. This holds for both samples, which present different lattice effects with T, thus suggesting the primary role of cation disorder as the source of the lack of long-range order. The presence, for both samples, of defined insulating- to metallic-like transitions suggests that the transport properties are not linked to the evolution of long-range order and that two-dimensional spin ordering in the layers of the perovskite blocks may be sufficient to "assist" the hole hopping. A possible reason for the suppression of magnetic order induced by the Ca doping is a size effect coupled to the cation size mismatch between the Sr and Ca ions.

Journal Article↗
PubMed2006

Structure of an accurate ab initio model of the aqueous Cl- ion at high temperatures.

The structure of an accurate ab initio model of aqueous chloride ion was calculated at two high-temperature state points (573 K, 0.725 g/cm(3) and 723 K, 0.0098 g/cm(3)) by a two-step procedure. First, the structure of an approximate model was calculated from a molecular dynamics simulation of the model. Then the difference between the structure of the ab initio model and the approximate model was calculated by non-Boltzmann weighting of a sample of configurations taken from the approximate model simulation. Radial distribution functions, average coordination numbers, the distribution of coordination numbers, an analysis of orientations of water in the first coordination shell, and the free energy of hydration of the chloride ion are reported for both state points. The most common water structure has one hydrogen close to the chloride ion and one pointing away (46% at 573 K and 57% at 723 K). Waters in the first coordination shell that are not strongly bound to the chloride ions are common. Several variations of the method were tested. Models in which the water-water interaction is calculated with ab initio methods predict only a slightly different structure than models in which water-water interactions are determined from the approximate models. Similarly, using the approximate model for solute-water interactions when the water is far from the chloride ion did not affect the results. Uncertainties due to the limited sample of configurations are estimated and found to be small. The results are in qualitative agreement with X-ray and neutron diffraction experiments and with simulations of approximate models.

Journal Article↗
PubMed2006

Mechanochemical synthesis and crystal structure of alpha'-AlD3 and alpha-AlD3.

AlD3 AlD3 was synthesized by ball milling of 3LiAlD4 + AlCl3. Planetary ball milling at room temperature resulted in a mixture of AlD3 (alpha and alpha') and Al in addition to LiCl, whereas cryomilling at 77 K resulted in only AlD3 and LiCl. The AlD3 obtained was a mixture of about 2/3alpha and 1/3alpha'. Alpha' was determined by powder neutron diffraction to take the beta-AlF3 structure with space group Cmcm and a = 6.470(3), b = 11.117(5), and c = 6.562(2) A. It is built up of corner-sharing AlD6 octahedra in an open structure with hexagonal holes of radius 3.9 A. Alpha' slowly decomposes during storage at 40 degrees C. Alpha-AlD3 is also described by a corner-sharing AlD6 network but in a more dense ReO3-type arrangement. Both AlD3 modifications have slightly shorter Al-D distances compared to Na3AlD6, Na2LiAlD6, and K2NaAlH6.

Journal Article↗
PubMed2006

Phase diagram and high-pressure boundary of hydrate formation in the ethane-water system.

Dissociation temperatures of gas hydrate formed in the ethane-water system were studied at pressures up to 1500 MPa. In situ neutron diffraction analysis and X-ray diffraction analysis in a diamond anvil cell showed that the gas hydrate formed in the ethane-water system at 340, 700, and 1840 MPa and room temperature belongs to the cubic structure I (CS-I). Raman spectra of C-C vibrations of ethane molecules in the hydrate phase, as well as the spectra of solid and liquid ethane under high-pressure conditions were studied at pressures up to 6900 MPa. Within 170-3600 MPa Raman shift of the C-C vibration mode of ethane in the hydrate phase did not show any discontinuities, which could be evidence of possible phase transformations. The upper pressure boundary of high-pressure hydrate existence was discovered at the pressure of 3600 MPa. This boundary corresponds to decomposition of the hydrate to solid ethane and ice VII. The type of phase diagram of ethane-water system was proposed in the pressure range of hydrate formation (0-3600 MPa).

Journal Article↗
PubMed2006

A tight-binding method for predicting magnetic ordering in Gd-containing solids: Application to GdB2C2.

Herein we present a method to compute d-f mediated exchange coupling in Gd-containing systems with a spin-dependent extended Hückel-tight binding (EHTB) method. EHTB parameters were chosen to exactly reproduce the spin density functional calculation (SDFT) energy gap of the S = 45/2 and 39/2 spin patterns for a model compound, Gd6CoI12(OPH3)6. Comparison between SDFT and EHTB results shows a good match between the spin-pattern energy distribution for the two methods. We applied our EHTB method to the solid-state compound GdB2C2 by considering 6 different variations in the ordering of the 4f7 moments. Calculations indicate that this metallic system should exhibit antiferromagnetic ordering of the 4f7 moments with a magnetic structure consistent with published neutron diffraction results.

Journal Article↗
PubMed2006

Structural characteristics of a 0.23 mole fraction aqueous solution of tetrahydrofuran at 20 degrees C.

Hydrogen/deuterium isotopic substitution neutron diffraction techniques were used to measure the structural correlation functions in a 0.23 mole fraction solution of tetrahydrofuran in water at room temperature. Empirical potential structure refinement (EPSR) was used to build a three-dimensional model of the liquid structure that is consistent with the experimental data. Detailed analysis shows a preference for nonpolar interactions between the cyclic ether molecules plus polar interactions between the ether and solvent water and hydrophobic hydration of the nonpolar regions of the solute. The increase in the number of hydrogen-bond-acceptor sites relative to the number of hydrogen-bond-donor sites in this system, compared to the balanced situation that would be found in pure water, has a marked compressive effect on the structure of the solvent. Despite the small size of the solvent water molecules, the 0.23 mole fraction aqueous solution is still found to contain small voids akin to those in pure liquid tetrahydrofuran. In contrast to the positive surface charge of the voids in the pure system, the average void in this aqueous solution is found to have a net negative charge. This is due to contributions from the water oxygen atoms that are negatively polarized by their intramolecular bonding.

Journal Article↗
PubMed2006

Investigation of finite system-size effects in molecular dynamics simulations of lipid bilayers.

In the absence of external stress, the surface tension of a lipid membrane vanishes at equilibrium, and the membrane exhibits long wavelength undulations that can be described as elastic (as opposed to tension-dominated) deformations. These long wavelength fluctuations are generally suppressed in molecular dynamics simulations of membranes, which have typically been carried out on membrane patches with areas <100 nm2 that are replicated by periodic boundary conditions. As a result, finite system-size effects in molecular dynamics simulations of lipid bilayers have been subject to much discussion in the membrane simulation community for several years, and it has been argued that it is necessary to simulate small membrane patches under tension to properly model the tension-free state of macroscopic membranes. Recent hardware and software advances have made it possible to simulate larger, all-atom systems allowing us to directly address the question of whether the relatively small size of current membrane simulations affects their physical characteristics compared to real macroscopic bilayer systems. In this work, system-size effects on the structure of a DOPC bilayer at 5.4 H2O/lipid are investigated by performing molecular dynamics simulations at constant temperature and isotropic pressure (i.e., vanishing surface tension) of small and large single bilayer patches (72 and 288 lipids, respectively), as well as an explicitly multilamellar system consisting of a stack of five 72-lipid bilayers, all replicated in three dimensions by using periodic boundary conditions. The simulation results are compared to X-ray and neutron diffraction data by using a model-free, reciprocal space approach developed recently in our laboratories. Our analysis demonstrates that finite-size effects are negligible in simulations of DOPC bilayers at low hydration, and suggests that refinements are needed in the simulation force fields.

Computer Simulation↗
PubMed2006

Chlorine-35/37 NMR spectroscopy of solid amino acid hydrochlorides: refinement of hydrogen-bonded proton positions using experiment and theory.

Trends in the chlorine chemical shift (CS) tensors of amino acid hydrochlorides are investigated in the context of new data obtained at 21.1 T and extensive quantum chemical calculations. The analysis of chlorine-35/37 NMR spectra of solid L-tryptophan hydrochloride obtained at two magnetic field strengths yields the chlorine electric field gradient (EFG) and CS tensors, and their relative orientations. The chlorine CS tensor is also determined for the first time for DL-arginine hydrochloride monohydrate. The drastic influence of 1H decoupling at 21.1 T on the spectral features of salts with particularly small 35Cl quadrupolar coupling constants (CQ) is demonstrated. The chlorine CS tensor spans (Omega) of hydrochloride salts of hydrophobic amino acids are found to be larger than those for salts of hydrophilic amino acids. A new combined experimental-theoretical procedure is described in which quantum chemical geometry optimizations of hydrogen-bonded proton positions around the chloride ions in a series of amino acid hydrochlorides are cross-validated against the experimental chlorine EFG and CS tensor data. The conclusion is reached that the relatively computationally inexpensive B3LYP/3-21G* method provides proton positions which are suitable for subsequent higher-level calculations of the chlorine EFG tensors. The computed value of is less sensitive to the proton positions. Following this cross-validation procedure, /CQ(35Cl)/ is generally predicted within 15% of the experimental value for a range of HCl salts. The results suggest the applicability of chlorine NMR interaction tensors in the refinement of proton positions in structurally similar compounds, e.g., chloride ion channels, for which neutron diffraction data are unavailable.

Amino Acids↗
PubMed2006

Thermodynamic investigation of n-hexane thin films adsorbed on magnesium oxide.

The thermodynamic properties of n-hexane adsorption on MgO(100) were determined using high-resolution volumetric adsorption isotherms in the temperature range 195-255 K. Two distinct layering transitions are observed in the isotherms. The isotherms are used to calculate the two-dimensional compressibility, the differential enthalpy and entropy, the heat of adsorption, and the isosteric heat of adsorption. Neutron Diffraction is used to identify where melting of the n-hexane monolayer takes place.

Journal Article↗
PubMed2000

Quasicrystalline valence bands in decagonal AlNiCo

Quasicrystals are metallic alloys that possess perfect long-range structural order, in spite of the fact that their rotational symmetries are incompatible with long-range periodicity. The exotic structural properties of this class of materials are accompanied by physical properties that are unexpected for metallic alloys. Considerable progress in resolving the geometric structures of quasicrystals has been made using X-ray and neutron diffraction, and concepts such as the quasi-unit-cell model have provided theoretical insights. But the basic properties of the valence electronic states--whether they are extended as in periodic crystals or localized as in amorphous materials--are still largely unresolved. Here we investigate the electronic bandstructure of quasicrystals through angle-resolved photoemission experiments on decagonal Al71.8Ni14.8Co13.4. We find that the s-p and d states exhibit band-like behaviour with the symmetry of the quasiperiodic lattice, and that the Fermi level is crossed by dispersing d-bands. The observation of free-electron-like bands, distributed in momentum space according to the surface diffraction pattern, suggests that the electronic states are not dominated by localization.

Journal Article↗
PubMed2001

A Bragg glass phase in the vortex lattice of a type II superconductor.

Although crystals are usually quite stable, they are sensitive to a disordered environment: even an infinitesimal amount of impurities can lead to the destruction of crystalline order. The resulting state of matter has been a long-standing puzzle. Until recently it was believed to be an amorphous state in which the crystal would break into 'crystallites'. But a different theory predicts the existence of a novel phase of matter: the so-called Bragg glass, which is a glass and yet nearly as ordered as a perfect crystal. The 'lattice' of vortices that contain magnetic flux in type II superconductors provide a good system to investigate these ideas. Here we show that neutron-diffraction data of the vortex lattice provides unambiguous evidence for a weak, power-law decay of the crystalline order characteristic of a Bragg glass. The theory also predicts accurately the electrical transport properties of superconductors; it naturally explains the observed phase transitions and the dramatic jumps in the critical current associated with the melting of the Bragg glass. Moreover, the model explains experiments as diverse as X-ray scattering in disordered liquid crystals and the conductivity of electronic crystals.

Journal Article↗
PubMed2002

Molecular segregation observed in a concentrated alcohol-water solution.

When a simple alcohol such as methanol or ethanol is mixed with water, the entropy of the system increases far less than expected for an ideal solution of randomly mixed molecules. This well-known effect has been attributed to hydrophobic headgroups creating ice-like or clathrate-like structures in the surrounding water, although experimental support for this hypothesis is scarce. In fact, an increasing amount of experimental and theoretical work suggests that the hydrophobic headgroups of alcohol molecules in aqueous solution cluster together. However, a consistent description of the details of this self-association is lacking. Here we use neutron diffraction with isotope substitution to probe the molecular-scale structure of a concentrated alcohol water mixture (7:3 molar ratio). Our data indicate that most of the water molecules exist as small hydrogen-bonded strings and clusters in a 'fluid' of close-packed methyl groups, with water clusters bridging neighbouring methanol hydroxyl groups through hydrogen bonding. This behaviour suggests that the anomalous thermodynamics of water alcohol systems arises from incomplete mixing at the molecular level and from retention of remnants of the three-dimensional hydrogen-bonded network structure of bulk water.

Journal Article↗
PubMed2004

Partial order in the non-Fermi-liquid phase of MnSi.

Only a few metallic phases have been identified in pure crystalline materials. These include normal, ferromagnetic and antiferromagnetic metals, systems with spin and charge density wave order, and superconductors. Fermi-liquid theory provides a basis for the description of all of these phases. It has been suggested that non-Fermi-liquid phases of metals may exist in some heavy-fermion compounds and oxide materials, but the discovery of a characteristic microscopic signature of such phases presents a major challenge. The transition-metal compound MnSi above a certain pressure (p(c) = 14.6 kbar) provides what may be the cleanest example of an extended non-Fermi-liquid phase in a three-dimensional metal. The bulk properties of MnSi suggest that long-range magnetic order is suppressed at p(c) (refs 7-12). Here we report neutron diffraction measurements of MnSi, revealing that sizeable quasi-static magnetic moments survive far into the non-Fermi-liquid phase. These moments are organized in an unusual pattern with partial long-range order. Our observation supports the existence of novel metallic phases with partial ordering of the conduction electrons (reminiscent of liquid crystals), as proposed for the high-temperature superconductors and heavy-fermion compounds.

Journal Article↗
PubMed2005

Topological versus chemical ordering in network glasses at intermediate and extended length scales.

Atomic ordering in network glasses on length scales longer than nearest-neighbour length scales has long been a source of controversy. Detailed experimental information is therefore necessary to understand both the network properties and the fundamentals of glass formation. Here we address the problem by investigating topological and chemical ordering in structurally disordered AX2 systems by applying the method of isotopic substitution in neutron diffraction to glassy ZnCl2. This system may be regarded as a prototypical ionic network forming glass, provided that ion polarization effects are taken into account, and has thus been the focus of much attention. By experiment, we show that both the topological and chemical ordering are described by two length scales at distances greater than nearest-neighbour length scales. One of these is associated with the intermediate range, as manifested by the appearance in the measured diffraction patterns of a first sharp diffraction peak at 1.09(3) A(-1); the other is associated with an extended range, which shows ordering in the glass out to 62(4) A. We also find that these general features are characteristic of glassy GeSe2, a prototypical covalently bonded network material. The results therefore offer structural insight into those length scales that determine many important aspects of supercooled liquid and glass phenomenology.

Journal Article↗
PubMed2006

Room-temperature miscibility gap in LixFePO4.

The rechargeable lithium-ion cell is an advanced energy-storage system. However, high cost, safety hazards, and chemical instability prohibit its use in large-scale applications. An alternative cathode material, LiFePO(4), solves these problems, but has a kinetic problem involving strong electron/hole localization. One reason for this is believed to be the limited carrier density in the fixed monovalent Fe(3+)PO(4)/LiFe(2+)PO(4) two-phase electrode reaction in LixFePO4. Here, we provide experimental evidence that LixFePO4, at room temperature, can be described as a mixture of the Fe(3+)/Fe(2+) mixed-valent intermediate LialphaFePO4 and Li1-betaFePO4 phases. Using powder neutron diffraction, the site occupancy numbers for lithium in each phase were refined to be alpha=0.05 and 1-beta=0.89. The corresponding solid solution ranges outside the miscibility gap (0<x<alpha,1-beta<x<1) were detected by the anomaly in the configurational entropy, and also by the deviation of the open-circuit voltage from the constant equilibrium potential. These findings encourage further improvement of this important class of compounds at ambient temperatures.

Journal Article↗