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PubMed2026

Uncovering the early and conserved molecular mechanisms of root nitrogen foraging in model and crops.

BACKGROUND: Nitrogen (N) foraging, the ability of plants to promote preferential root growth in N-rich patches of soil, is fundamental to the competitiveness and wellbeing of plants. A unique “split-root” system, where a heterogenous N environment stimulates root foraging, provides a powerful experimental model to study the mechanisms underlying root foraging in model (Arabidopsis) and/or crop plants. RESULTS: We used the split-root set up to capture early molecular events involved in systemic N-signaling after exposure to a heterogeneous N signal, through time-course transcriptomic analysis across shoots and roots of Arabidopsis. We found that a histone methyltransferase, SET DOMAIN GROUP 8 (SDG8), is necessary for root N-foraging, suggesting a previously unknown role for chromatin regulation in mediating the preferential root growth response to colonize N-rich patches. To determine if the underlying molecular mechanism is conserved in evolution, we compared the root foraging behavior from model-to-crop (Arabidopsis, tomato and maize). Our analysis showed the model and crop species shared a root N-foraging growth response, with some variation among specific genotypes. Interestingly, we observed both shared and distinct transcriptional responses to heterogenous N environments among these three species. CONCLUSIONS: Our study has generated insights into the molecular basis of root N-foraging, with the potential to improve nutrient use efficiency in crop plants in a heterogeneous field environment.

Crops, Agricultural↗

PubMedDate not supplied

Diagnosis by polymerase chain reaction of Erysipelas septicemia in a flock of ring-necked pheasants.

A flock of 810 pheasants experienced 6.2% mortality over 6 days. Affected birds were weak and lethargic for up to 24 hr before death. Examined birds were thin, and gross lesions consisted of thick opaque crops and cecal cores. Histologically, there was capillariasis of the crop and multifocal ulcerative typhlitis with Heterakis spp. infection, and numerous systemic intravascular monocytes were filled with clusters of blue rod-shaped organisms. The organisms were gram-positive bacilli by Brown and Brenn staining and ultrastructural analysis. Liver bacterial cultures were negative for pathogenic bacteria. Erysipelas septicemia was diagnosed by an Erysipelothrix species-specific polymerase chain reaction method with the substrate DNA isolated from formalin-fixed, paraffin-embedded liver.

Animals↗

PubMed2006

Lettuce (Lactuca sativa L.).

Lettuce is a globally important leafy vegetable with the United States being the largest world producers. The crop is susceptible to a number of viruses that are aphid transmitted and also highly vulnerable to post harvest diseases. Although wild species of lettuce are an important source of disease resistance genes, their introgression into commercial lettuce has been limited owing to sexual incompatibilities. Hence, the development of a gene transfer system for lettuce would be extremely valuable both in improving the genetic diversity of the crop and also for the transfer of useful agronomic traits. This chapter describes an Agrobacterium-mediated gene delivery system that is highly adaptable for the production of transgenic plants using a wide range of lettuce germplasms. The system described, commonly referred to as the genotype-independent transformation system, has been used for the transfer of several agriculturally useful traits into commercial varieties of lettuce. In this case, A. tumefaciens strain LBA4404 carrying a binary vector with supervirulent pToK47 was used for infecting excised cotyledonary explants. The plant selectable marker gene neomycin phosphotransferase II (nptII) was used, and transformed plants were selected using kanamycin in the culture medium. The beta-glucuronidase gene with intron (gus-intron) was also used in the gene transfer study to confirm the transgenicity of regenerated plants further.

Agrobacterium tumefaciens↗

PubMed2007

Functional biology of plant phosphate uptake at root and mycorrhiza interfaces.

Phosphorus (P) is an essential plant nutrient and one of the most limiting in natural habitats as well as in agricultural production world-wide. The control of P acquisition efficiency and its subsequent uptake and translocation in vascular plants is complex. The physiological role of key cellular structures in plant P uptake and underlying molecular mechanisms are discussed in this review, with emphasis on phosphate transport across the cellular membrane at the root and arbuscular-mycorrhizal (AM) interfaces. The tools of molecular genetics have facilitated novel approaches and provided one of the major driving forces in the investigation of the basic transport mechanisms underlying plant P nutrition. Genetic engineering holds the potential to modify the system in a targeted way at the root-soil or AM symbiotic interface. Such approaches should assist in the breeding of crop plants that exhibit improved P acquisition efficiency and thus require lower inputs of P fertilizer for optimal growth. Whether engineering of P transport systems can contribute to enhanced P uptake will be discussed.

Biological Transport↗

PubMed2006

Sampling plan for Diaphania spp. (Lepidoptera: Pyralidae) and for hymenopteran parasitoids on cucumber.

The objective of this work was to determine the best technique, sampling unit, and the number of samples to compose a conventional sampling plan for the cucurbit borers, Diaphania spp. (Lepidoptera: Pyralidae), and for hymenopteran parasitoids on cucumber. This research was carried out in 10 commercial cucumber crops fields from July to December 2000 in Tocantins, Minas Gerais State, Brazil (21 degrees 11' 15" S; 42 degrees 03' 45" W; altitude 363 m). The sampling methods studied were beating on a tray, direct counting of insects on the lower leaf surface, and whole leaf collection. Three sampling units also were studied: leaves from a branch located in the apical, median, or basal third of the canopy. The best sampling systems, which included the best technique and sampling unit, were determined based on the relative variance and the economic precision of the sampling. Once the best sampling systems were established, the numbers of samples to compose the conventional sampling plans were determined. The more suitable sampling system for the larvae of Diaphania spp. in cucumber plants was beating a leaf of the median third of the canopy on a plastic tray. One leaf must be sampled for every 50 plants in a crop. The more suitable sampling system for hymenopteran parasitoids in cucumber plants was to directly count the adults on one leaf of the median third of the canopy. One leaf must be sampled for every 74 plants in a crop.

Animals↗

PubMed1997

Integration of crop production with CELSS waste management.

Lettuce plants were grown utilizing water, inorganic elements, and CO2 inputs recovered from waste streams. The impact of these waste-derived inputs on the growth of lettuce was quantified and compared with results obtained when reagent grade inputs were used. Phytotoxicity was evident in both the untreated wastewater stream and the recovered CO2 stream. The toxicity of surfactants in wastewater was removed using several treatment systems. Harmful effects of gaseous products resulting from incineration of inedible biomass on crop growth were observed. No phytotoxicity was observed when inorganic elements recovered from incinerated biomass ash were used to prepare the hydroponic solution, but the balance of nutrients had to be modified to achieve near optimal growth. The results were used to evaluate closure potential of water and inorganic elemental loops for integrated plant growth and human requirements.

Biomass↗

PubMed2005

Crop biotechnology provides an opportunity to develop a sustainable future.

The current reliance on petro-based fuels and chemicals is not sustainable. New technologies typically take approximately 25 years to penetrate the market; consequently, the development of viable alternatives is required in the near future. Plant-based systems capture solar energy and can be produced in a renewable manner. However, the harvestable parts are not well optimized for energy transfer and this has been a significant limitation to the development of economically viable and sustainable biomass energy systems. Biotechnology has provided a new toolset that can be used to design and optimize the capture of solar energy through crops. Further development of biotechnology and genomics tools will enable the development of crops with specific traits that are optimized for biofuels and bioenergy. The implementation of such a system will enable a sustainable platform for centuries to come and should be given a high priority in society.

Agriculture↗

PubMed2006

Use of thermal and visible imagery for estimating crop water status of irrigated grapevine.

Achieving high quality wine grapes depends on the ability to maintain mild to moderate levels of water stress in the crop during the growing season. This study investigates the use of thermal imaging for monitoring water stress. Experiments were conducted on a wine-grape (Vitis vinifera cv. Merlot) vineyard in northern Israel. Irrigation treatments included mild, moderate, and severe stress. Thermal and visible (RGB) images of the crop were taken on four days at midday with a FLIR thermal imaging system and a digital camera, respectively, both mounted on a truck-crane 15 m above the canopy. Aluminium crosses were used to match visible and thermal images in post-processing and an artificial wet surface was used to estimate the reference wet temperature (T(wet)). Monitored crop parameters included stem water potential (Psi(stem)), leaf conductance (g(L)), and leaf area index (LAI). Meteorological parameters were measured at 2 m height. CWSI was highly correlated with g(L) and moderately correlated with Psi(stem). The CWSI-g(L) relationship was very stable throughout the season, but for that of CWSI-Psi(stem) both intercept and slope varied considerably. The latter presumably reflects the non-direct nature of the physiological relationship between CWSI and Psi(stem). The highest R(2) for the CWSI to g(L) relationship, 0.91 (n=12), was obtained when CWSI was computed using temperatures from the centre of the canopy, T(wet) from the artificial wet surface, and reference dry temperature from air temperature plus 5 degrees C. Using T(wet) calculated from the inverted Penman-Monteith equation and estimated from an artificially wetted part of the canopy also yielded crop water-stress estimates highly correlated with g(L) (R(2)=0.89 and 0.82, respectively), while a crop water-stress index using 'theoretical' reference temperatures computed from climate data showed significant deviations in the late season. Parameter variability and robustness of the different CWSI estimates are discussed. Future research should aim at developing thermal imaging into an irrigation scheduling tool applicable to different crops.

Air↗

PubMed2005

Cereal area and nitrogen use efficiency are drivers of future nitrogen fertilizer consumption.

At a global scale, cereal yields and fertilizer N consumption have increased in a near-linear fashion during the past 40 years and are highly correlated with one another. However, large differences exist in historical trends of N fertilizer usage and nitrogen use efficiency (NUE) among regions, countries, and crops. The reasons for these differences must be understood to estimate future N fertilizer requirements. Global nitrogen needs will depend on: (i) changes in cropped cereal area and the associated yield increases required to meet increasing cereal demand from population and income growth, and (ii) changes in NUE at the farm level. Our analysis indicates that the anticipated 38% increase in global cereal demand by 2025 can be met by a 30% increase in N use on cereals, provided that the steady decline in cereal harvest area is halted and the yield response to applied N can be increased by 20%. If losses of cereal cropping area continue at the rate of the past 20 years (-0.33% per year) and NUE cannot be increased substantially, a 60% increase in global N use on cereals would be required to meet cereal demand. Interventions to increase NUE and reduce N losses to the environment must be accomplished at the farm- or field-scale through a combination of improved technologies and carefully crafted local policies that contribute to the adoption of improved N management; uniform regional or national directives are unlikey to be effective at both sustaining yield increases and improving NUE. Examples from several countries show that increases in NUE at rates of 1% per year or more can be achieved if adequate investments are made in research and extension. Failure to arrest the decrease in cereal crop area and to improve NUE in the world's most important agricultural systems will likely cause severe damage to environmental services at local, regional, and global scales due to a large increase in reactive N load in the environment.

Crops, Agricultural↗

PubMed2004

Modeling the Qo site of crop pathogens in Saccharomyces cerevisiae cytochrome b.

Saccharomyces cerevisiae has been used as a model system to characterize the effect of cytochrome b mutations found in fungal and oomycete plant pathogens resistant to Q(o) inhibitors (QoIs), including the strobilurins, now widely employed in agriculture to control such diseases. Specific residues in the Q(o) site of yeast cytochrome b were modified to obtain four new forms mimicking the Q(o) binding site of Erysiphe graminis, Venturia inaequalis, Sphaerotheca fuliginea and Phytophthora megasperma. These modified versions of cytochrome b were then used to study the impact of the introduction of the G143A mutation on bc(1) complex activity. In addition, the effects of two other mutations F129L and L275F, which also confer levels of QoI insensitivity, were also studied. The G143A mutation caused a high level of resistance to QoI compounds such as myxothiazol, axoxystrobin and pyraclostrobin, but not to stigmatellin. The pattern of resistance conferred by F129L and L275F was different. Interestingly G143A had a slightly deleterious effect on the bc(1) function in V. inaequalis, S. fuliginea and P. megasperma Q(o) site mimics but not in that for E. graminis. Thus small variations in the Q(o) site seem to affect the impact of the G143A mutation on bc(1) activity. Based on this observation in the yeast model, it might be anticipated that the G143A mutation might affect the fitness of pathogens differentially. If so, this could contribute to observed differences in the rates of evolution of QoI resistance in fungal and oomycete pathogens.

Amino Acid Sequence↗

PubMed1998

Potential of stockpiled perennial forages in winter grazing systems for pregnant beef cows.

We conducted a 3-yr study to measure herbage masses and chemical compositions of stockpiled perennial forages and corn crop residues and compare performance of cows grazing these forages or maintained in a drylot during winter. Midgestation, mature, medium-framed crossbred beef cows (mean BW, 506 kg; mean condition score, 5.3) 1) strip-grazed replicated fields containing stockpiled tall fescue-alfalfa, 2) strip-grazed stockpiled smooth bromegrass without (yr 1) and with (yr 2 and 3) red clover, 3) strip-grazed corn crop residues at 1.2 cows/ha, or 4) they were confined in a drylot for 129 to 141 d. All cows were offered grass-legume hay as large round bales to maintain a condition score of 5 on a 9-point scale. Mean initial amounts (P < .05) and daily changes (P < .01) of OM mass were greater in corn crop residues than in stockpiled perennial forages during the winter grazing seasons. Initial in vitro organic matter disappearance (IVOMD) and CP concentrations were greater (P < .05) and initial NDF, ADF, and ADIN concentrations in stockpiled forages were lower (P < .01) than those in corn crop residues. Mean changes in IVOMD, CP, NDF, and ADF concentrations during the grazing season were -.09, -.004, .10, and .11 percentage units OM/d, and they did not differ (P > .05) among forage species or grazed and nongrazed areas. Cows grazing stockpiled tall fescue-alfalfa had greater (P < .05) BW gains than those in other systems and greater (P < .05) body condition score increases than cows grazing corn crop residues. Because cows grazed stockpiled tall fescue-alfalfa, smooth bromegrass-red clover, and corn crop residues for 85, 83, and 57 d before beginning hay supplementation, cows grazing these forages required 1,069, 1,031, and 627 kg/cow less hay DM to maintain body condition than cows confined in a drylot.

Animal Feed↗

PubMed1993

Agriculture in Gloria Land.

A farming system has been developed on the Gloria Land farm at the Sri Aurobindo Ashram that uses purely organic materials and achieves yields comparable with or better than those on conventional farms under similar agroclimatic conditions. The stimulus for the conversion to organic farming came from observations of the toxicity of chemical pesticides and their apparent ineffectiveness in reducing the impact of pests and diseases. On the Gloria Land farm, a carefully integrated mixture of activities includes crop growing, animal husbandry, fish rearing and sericulture. Sufficient organic waste is produced to fulfill at the needs of the farm's crops. Energy is partially supplied by biogas produced on the farm. This system is economically viable and ecologically sustainable.

Agriculture↗

PubMed2005

Integrating seasonal climate prediction and agricultural models for insights into agricultural practice.

Interest in integrating crop simulation models with dynamic seasonal climate forecast models is expanding in response to a perceived opportunity to add value to seasonal climate forecasts for agriculture. Integrated modelling may help to address some obstacles to effective agricultural use of climate information. First, modelling can address the mismatch between farmers' needs and available operational forecasts. Probabilistic crop yield forecasts are directly relevant to farmers' livelihood decisions and, at a different scale, to early warning and market applications. Second, credible ex ante evidence of livelihood benefits, using integrated climate-crop-economic modelling in a value-of-information framework, may assist in the challenge of obtaining institutional, financial and political support; and inform targeting for greatest benefit. Third, integrated modelling can reduce the risk and learning time associated with adaptation and adoption, and related uncertainty on the part of advisors and advocates. It can provide insights to advisors, and enhance site-specific interpretation of recommendations when driven by spatial data. Model-based 'discussion support systems' contribute to learning and farmer-researcher dialogue. Integrated climate-crop modelling may play a genuine, but limited role in efforts to support climate risk management in agriculture, but only if they are used appropriately, with understanding of their capabilities and limitations, and with cautious evaluation of model predictions and of the insights that arises from model-based decision analysis.

Climate↗

PubMed2003

Weeds in fields with contrasting conventional and genetically modified herbicide-tolerant crops. I. Effects on abundance and diversity.

We compared the seedbanks, seed rains, plant densities and biomasses of weeds under two contrasting systems of management in beet, maize and spring oilseed rape. Weed seedbank and plant density were measured at the same locations in two subsequent seasons. About 60 fields were sown with each crop. Each field was split, one half being sown with a conventional variety managed according to the farmer's normal practice, the other half being sown with a genetically modified herbicide-tolerant (GMHT) variety, with weeds controlled by a broad-spectrum herbicide. In beet and rape, plant densities shortly after sowing were higher in the GMHT treatment. Following weed control in conventional beet, plant densities were approximately one-fifth of those in GMHT beet. In both beet and rape, this effect was reversed after the first application of broad-spectrum herbicide, so that late-season plant densities were lower in the GMHT treatments. Biomass and seed rain in GMHT crops were between one-third and one-sixth of those in conventional treatments. The effects of differing weed-seed returns in these two crops persisted in the seedbank: densities following the GMHT treatment were about 20% lower than those following the conventional treatment. The effect of growing maize was quite different. Weed density was higher throughout the season in the GMHT treatment. Late-season biomass was 82% higher and seed rain was 87% higher than in the conventional treatment. The difference was not subsequently detectable in the seedbank because the total seed return was low after both treatments. In all three crops, weed diversity was little affected by the treatment, except for transient effects immediately following herbicide application.

Agriculture↗

PubMed2002

Managing selenium-contaminated agricultural drainage water by the integrated on-farm drainage management system: role of selenium volatilization.

The Integrated on-Farm Drainage Management (IFDM) system was designed to dispose of selenium (Se)-contaminated agricultural irrigation drainage water through the sequential reuse of saline drainage water to grow crops having different salt tolerance. This study quantified the extent of biological volatilization in Se removal from the IFDM system located in the western San Joaquin Valley, California. Selenium volatilization from selected treatment areas, including pickleweed (Salicornia bigelovii Torr.), saltgrass (Distichlis spicata L.), bare soil, and the solar evaporator, was monitored biweekly using an open-flow sampling chamber system during the pickleweed growing season from February to September 1997, and monthly from September 1997 to January 1998. Biological volatilization from the pickleweed section removed 62.0 +/- 3.6 mg Se m(-2) y(-1) to the atmosphere, which was 5.5-fold greater than the Se accumulated in pickleweed tissues (i.e., phytoextraction). The total Se removed by volatilization from the bare soil, saltgrass, and the solar evaporator was 16.7 +/- 1.1, 4.8 +/- 0.3, and 4.3 +/- 0.9mg Se m(-2) y(-1), respectively. Selenium removal by volatilization accounted for 6.5% of the annual total Se input (957.7mg Sem(-2) y(-1)) in the pickleweed field, and about 1% of the total Se input (432.7 mg Se m(-2) y(-1)) in the solar evaporator. We concluded that Se volatilization under naturally occurring field conditions represented a relatively minor, but environmentally important pathway of Se removal from the IFDM system.

Agriculture↗

PubMed1996

Food production and nutrition in Biosphere 2: results from the first mission September 1991 to September 1993.

The initial test of the Biosphere 2 agricultural system was to provide a nutritionally adequate diet for eight crew members during a two year closure experiment, 1991-1993. The overall results of that trial are presented in this paper. The 2000 m2 cropping area provided about 80 percent of overall nutritional needs during the two years. Adaptation of the crew to the diet which averaged 2200 calories, 73 g. of protein and 32 g. of fat per person over the course of the two years. The diet was primarily vegetarian, with only small amounts of milk, meat and eggs from the system's domestic animals. The crew experienced 10-20 percent weight loss, most of which occurred in the first six months of the closure reflecting adaptation to the diet and lower caloric intake during that period. Since Biosphere 2 is a tightly sealed system, non-toxic methods of pest and disease control were employed and inedible plant material, domestic animal wastes and human waste-water were processed and nutrients returned to the soil. Crop pests and diseases, especially broad mites and rootknot nematode, reduced yields, and forced the use of alternative crops. Outstanding crops included rice, sweet potato, beets, banana, and papaya. The African pygmy goats were the most productive of the domestic animals. Overall, the agriculture and food processing required some 45% of the crew time.

Adaptation, Physiological↗

PubMed2026

Genetic transformation of forage crops: comparative barriers, evidence, and emerging strategies.

Forage crops include phylogenetically and biologically distinct legumes and grasses, and their genetic transformation is constrained by different combinations of host response, DNA-delivery efficiency, regeneration competence, genotype dependence, and genome stability. This review critically compares evidence from forage legumes and forage grasses rather than treating these groups as a single transformation category. We evaluate Agrobacterium-mediated transformation, protoplast-based delivery, particle bombardment, CRISPR/Cas-enabled applications, developmental regulators (DRs), viral vectors, and nanomaterial-mediated delivery according to four practical outcomes: reproducibility across genotypes, recovery of regenerated plants, heritable transmission, and genetic stability. Direct evidence in forage crops shows that protocol performance is strongly species-, genotype-, explant-, and endpoint-dependent; efficiencies based on transient reporters or resistant callus therefore cannot be directly equated with stable, fertile events. DR-assisted regeneration has direct proof of concept in recalcitrant forage grasses, whereas stable nanomaterial-mediated transformation and virus-induced heritable editing remain unvalidated in forage crops. We conclude that current progress is best interpreted as the engineering of interacting delivery and regeneration constraints, not as a universal transition to genotype-independent transformation. Priority should be given to standardized outcome reporting, multi-genotype and inter-laboratory validation, controlled DR expression, and rigorous molecular and phenotypic assessment of regenerated plants.

Crops, Agricultural↗

PubMed2003

[Effects of free air CO2 enrichment on rice canopy energy balance].

The change of crop canopy energy balance will affect crop growth and development and its water use efficiency. In this study, the FACE system (setup at at Anzhen, Wuxi, Jiangsu Province in 2001) was used to investigate the effects of FACE on rice canopy energy balance. The rice canopy microclimate observations were carried out from August 26 to October 13, 2001 when the rice crops were at the heading to maturing stage. The results showed that the maximum difference of rice canopy sensible and latent heat fluxes between ambient and FACE occurred at the same time of minimum air humidity, i.e., at about 14:00. From flowering to maturing stage, the maximum difference of rice canopy sensible and latent heat flux between FACE and ambient varied between 12-55 J.m-2.s-1 and -15(-)-65 J.m-2.s-1, respectively. The daytime total canopy sensible and latent heat fluxes of FACE were higher and lower than those of ambient, respectively, throughout flowering to maturing stage. The differences of daytime total canopy sensible and latent heat fluxes between ambient and FACE increased with the increase of net radiation above canopy during the same development stage, but decreased with the progress of the development stage. From flowering to maturing stage, the average difference of daytime total canopy latent heat flux between ambient and FACE was about 6.7%. FACE increased and decreased the ratio of daytime total canopy sensible and latent heat flux to daytime total net radiation above canopy, respectively, the ratio differences between FACE and ambient were 5.5%.

Air↗