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At least 829 records · Page 46Linked to original sources
PubMed1979

Genetic structure of the Queckchi Indians. Dental microdifferentiation.

Nine oral morphologic characters were investigated. Their frequencies are compared with those published for other populations. The possibility of using such characters to estimate genetic distance between populations is discussed and the conclusion is reached that, although previous studies have suggested this to be a valid approach, further studies testing this subject are needed.

Adolescent↗
PubMed2002

Genetic structure of natural populations of the grass endophyte Epichloë festucae in semiarid grasslands.

Plants of red fescue (Festuca rubra), a commercially important turf grass, are infected by the fungal endophyte Epichloë festucae in semiarid natural grasslands, known as dehesas, in western Spain. We used amplified fragment length polymorphism (AFLP) markers to analyse the genetic polymorphism existing in two natural populations of Epichloë festucae. Linkage disequilibrium and the presence of clonal lineages indicated that nonrecombinant asexual reproduction predominates in both populations. However, most genetic variation detected was found to occur within populations, with only a moderate amount of genetic differentiation between populations (F(ST): 0.197). Overall, the study suggests that dehesa grasslands are useful reservoirs of Epichloë festucae endophytes, and provides information on population structure which is relevant to design sampling strategies.

Genetic Variation↗
PubMed2000

Matrilineal genetic structure and female-mediated gene flow in red grouse (Lagopus lagopus scoticus): an analysis using mitochondrial DNA.

DNA sequence variation at the hypervariable 5' end of the mitochondrial control region was examined in 247 individuals to detect genetic divergence among 14 populations of red grouse (Lagopus lagopus scoticus) in northeastern Scotland. Ten haplotypes were resolved, several of which were shared among populations. Analysis of molecular variance, Nei's gamma ST, and a cladistic estimate of the amount of gene flow indicated a lack of overall population differentiation. Patterns of overall panmixia are in stark contrast to previous reports of localized subdivision among the same set of populations detected using hypervariable microsatellite markers. Because grouse cocks are territorial and show extreme natal philopatry and females are the dispersing sex, such discordance could be explained by sex-biased dispersal, with extensive female-mediated gene flow preventing mitochondrial DNA divergence. However, it is difficult to reconcile how effective dispersal of females would not homogenize both mitochondrial and nuclear structure simultaneously. We use a model that examines the spatial and temporal dynamics of diparentally and uniparentally inherited genes to show that, under realistic ecological scenarios and with specific differences in the dispersal of males and females, the local effective size of the nuclear genome can be less than that of the mitochondrial and the patterns of structuring we observe are meaningful.

Animals↗
PubMed2005

Population genetic structure and tolerance to dioxin-like compounds of a migratory marine fish (Menidia menidia) at polychlorinated biphenyl-contaminated and reference sites.

The present study was conducted to evaluate evidence of genetic adaptation to local contaminants in populations of the migratory marine fish Menidia menidia residing seasonally in reference sites or an industrial harbor contaminated with dioxin-like compounds (DLCs). For this purpose, we compared DLC sensitivity and genetic patterns of populations sampled from sites both inside and outside New Bedford Harbor (NBH; MA, USA), a U.S. Environmental Protection Agency Superfund site with extreme polychlorinated biphenyl (PCB) contamination. Offspring of M. menidia collected from NBH were significantly less sensitive regarding embryonic exposure to the dioxin-like PCB congener 3,3',4,4',5-pentachlorobiphenyl (PCB 126) than offspring of M. menidia from a reference site. Analysis of 10 polymorphic enzymatic loci indicated little genetic differentiation among populations in the study area. However, genotype frequencies of juveniles from both NBH and an adjacent site in Massachusetts exhibited significant deviations from Hardy-Weinberg equilibrium expectations at one locus, phosphoglucomutase (PGM*). Genetic analysis of survivors of embryonic laboratory exposure to PCB 126 indicated that genotypes at PGM* were related to survivorship. Although a relationship was identified between DLC tolerance and PGM* genotype, regional mixing of M. menidia populations during migration and absence of multigeneration exposure at contaminated sites may limit localized adaptation.

Adaptation, Physiological↗
PubMed1996

Genetic structure of the Manne Dora, a tribal population of Andhra Pradesh.

The Manne Dora, a small tribe inhabiting the north coastal districts of Andhra Pradesh, South India, have been studied for 24 genetic markers, including blood groups, plasma proteins, and red cell enzymes. A genetic distance analysis was used to test whether this tribe was part of another tribe, the Konda Dora, and to clarify its divergence from other tribal populations of Andhra Pradesh. The dendrogram and principal components analysis reveal clustering of the tribal populations in close agreement with geographic distance. The study indicates that the Manne Dora may have been genetically part of the Konda Dora and separated only recently.

Adult↗
PubMedDate not supplied

[The genetic structure of the European goldfish Carassius auratus s. lato (Cyprinidae) in Ukrainian water bodies: an analysis of bisexual samples].

Biochemical gene mapping of goldfish populations in the middle Dnieper basin demonstrated that 8 out of 17 studied enzyme and protein systems are uncoded by duplicated loci and two of them represent isoloci. Noteworthily, the heterozygosity in the studied goldfish samples was significantly higher than the average for bony fish (Hexp = 0.128, 0.135). Cytometric analysis of the samples demonstrated that one of them includes about 20% of presumably triploid females that, nevertheless, did not demonstrate a common electrophoretic pattern of the polymorphic loci, which is typical for unisexual parthenogenetic forms. Moreover, no additional gene applications (constant heterozygotes), unique alleles (diagnostic patterns), or stable manifestation of a gene dose effect were revealed in the polyploid females. Several hypotheses were proposed to explain such unusual structure of triploid parthenogenetic individuals.

Animals↗
PubMed2006

Human population genetic structure and diversity inferred from polymorphic L1(LINE-1) and Alu insertions.

BACKGROUND/AIMS: The L1 retrotransposable element family is the most successful self-replicating genomic parasite of the human genome. L1 elements drive replication of Alu elements, and both have had far-reaching impacts on the human genome. We use L1 and Alu insertion polymorphisms to analyze human population structure. METHODS: We genotyped 75 recent, polymorphic L1 insertions in 317 individuals from 21 populations in sub-Saharan Africa, East Asia, Europe and the Indian subcontinent. This is the first sample of L1 loci large enough to support detailed population genetic inference. We analyzed these data in parallel with a set of 100 polymorphic Alu insertion loci previously genotyped in the same individuals. RESULTS AND CONCLUSION: The data sets yield congruent results that support the recent African origin model of human ancestry. A genetic clustering algorithm detects clusters of individuals corresponding to continental regions. The number of loci sampled is critical: with fewer than 50 typical loci, structure cannot be reliably discerned in these populations. The inclusion of geographically intermediate populations (from India) reduces the distinctness of clustering. Our results indicate that human genetic variation is neither perfectly correlated with geographic distance (purely clinal) nor independent of distance (purely clustered), but a combination of both: stepped clinal.

Alu Elements↗
PubMed1997

Mutation and haplotype analyses of the Werner's syndrome gene based on its genomic structure: genetic epidemiology in the Japanese population.

The correlation between mutations in the Werner's syndrome (WRN) gene and the haplotypes of surrounding markers was studied in Japanese patients. We have elucidated the genomic structure of WRN helicase, and found five additional mutations, designated mutations 6-10. Mutations 4 and 6 were found to be the two major mutations in this population; these mutations comprised 50.8% and 17.5%, respectively, of the total in a sample of 126 apparently unrelated chromosomes. Almost all the patients homozygous for mutation 4 shared a haplotype around the WRN gene, consistent with the view that they are derived from a single ancestor. This important advantage demonstrated in the identification of the WRN gene suggests that the Japanese present a unique population for the cloning of other disease genes. The conserved haplotype was observed across 19 loci, extending a distance estimated to be more than 1.4 Mbp around the WRN gene. This haplotype is rare among random Japanese individuals. Unexpectedly, all the nine patients homozygous for mutation 6 shared a haplotype that was identical to this haplotype at 18 of these 19 markers. These results suggest that mutations 4 and 6 arose independently in almost identical rare haplotypes. The remaining mutations (1, 5, 7, 8, 9, and 10) occurred rarely, and were each associated with different haplotypes.

DNA Helicases↗
PubMed1980

Simulation of the effects of changing population size on the genetic structure of Western Ireland.

During the 1800's, the population of Ireland underwent a rapid increase and subsequent decrease in population size. The effects of this change upon population structure were assessed using a simulation of the isolation by distance model and comparing the results to those obtained assuming constant population size. These results indicate that changes in within-group genetic similarity (kinship) brought about by a rapid increase in population size are cancelled by the effects of a rapid decrease in population size. Parameters of the isolation by distance model are hardly affected by population size changes. These results suggest that violation of the assumption of constant population size for population structure models may not be that serious when population size changes rapidly and in both directions.

Gene Pool↗
PubMed1991

Testing life-cycle theory by computer simulation--I. Introduction of genetical structure.

Computer simulation was used to relax assumptions of analytical life-cycle theory about the eventual outcome of evolution in a constant environment. The computer simulation models, of diploid one-locus genetic systems, are described in detail. Good agreement was obtained between the analytical and simulation outcomes, except in some cases of discrepancy between the male and female life cycles.

Animals↗
PubMed2000

Genetic structure and colonizing success of a clonal, weedy species, Pilosella officinarum (Asteraceae).

Introduced populations of weeds which are polyploid and reproduce primarily by apomixis are generally considered as having low levels of population genetic variation, highly differentiated populations and short evolutionary lifespans. Although polyploidy allows for habitat differentiation and colonization, lack of recombination because of apomixis means that long-term persistence is unlikely. However, variation can be introduced to a colonizing population by evolutionary changes in the mating system, or by somatic mutation and recombination. In this study hypersensitive genetic markers, inter-simple sequence repeats (ISSRs), were used to quantify genetic variation within Pilosella officinarum, a major weed of the New Zealand high country. Pilosella officinarum was introduced from Europe to New Zealand late in the 19th century and only polyploid, apomictic populations are thought to have survived. The combination of introduction history and breeding system has led to the assumption that New Zealand populations are necessarily genetically depauperate. However, our studies reveal variable levels of genetic variation and patterns of clonal distribution which indicate varying levels of sexual reproduction within New Zealand populations.

Asteraceae↗
PubMedDate not supplied

Genetic structure and microdifferentiation among four endogamous groups of Maharashtra, western India.

Phenotype and gene frequencies of 24 blood group, serum protein and red cell enzyme loci are examined in four endogamous groups (Brahmin, Maratha, Gujarati Hindu Patel and Parsee) of Maharashtra, Western India. Several genetic systems are investigated for the first time in this region. Genetic heterogeneity is suggested, although the overall variation shows general agreement with the populations already studied from Western India. In addition to the historical migration and possible selective effects, the present-day gene pool of Maharashtra is greatly influenced by sociocultural adaptation and breeding structure. The presence of rare alleles ESD*5, and BF*S1 suggests a Caucasoid affiliation of populations of this region.

Blood Group Antigens↗