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At least 811 records · Page 45Linked to original sources
PubMed1999

Do the structures of big ET-1 and big ET-3 adopt a similar overall fold? Consequences for endothelin converting enzyme specificity.

Big ET-1 and big ET-3 are precursor peptides which render endothelin-1 (ET-1) and endothelin-3 (ET-3) relatively unreactive and resistant to proteolytic cleavage. Big ET-1 is cleaved in vivo by ECE-1 (endothelin-converting enzyme), and big ET-3 is also cleaved but apparently to a significantly lesser extent by this enzyme. To shed light on the relation between structure and function, circular dichroism (CD) spectroscopy and homology modeling were used to determine whether big ET-1 and big ET-3 adopt similar secondary and tertiary structures. Analyses of the CD spectra and thermal denaturation indicate they have similar secondary structures and thermal stabilities. Superposition of the modeled coordinates of both peptides indicates that they can adopt the same overall fold except in the C-terminal residues, 34-38 in big ET-1 and 34-41 in big ET-3. This region corresponds to an area of complete sequence heterogeneity between the two peptides. A model has been developed which has a loop for residues 27-30 (HVVP in big ET-1), which have previously been demonstrated to be essential for eliciting efficient hydrolysis of the W21-V22 bond in big ET-1 and which have the sequence QTVP in big ET-3. Differences in affinity between big ET-1 and big ET-3 for ECE-1 thus appear to be due solely to sequence variations in the local region of the cleavage site.

Amino Acid Sequence↗
PubMed2001

Estimating the influence of forests on the overall fate of semivolatile organic compounds using a multimedia fate model.

On the basis of recently reported measurements of semivolatile organic compound (SOC) uptake in forest canopies, simple expressions are derived that allow the inclusion of a canopy compartment into existing non-steady-state multimedia fate models based on the fugacity approach. One such model is used to assess how the inclusion of the canopy compartment in the model affects the calculated overall behavior of SOCs with specific physical--chemical properties. The primary effect of the forest is an increase in the net atmospheric deposition to the terrestrial environment, reducing atmospheric concentrations and accordingly the extent of deposition to the agricultural and aquatic environments. This effect was most pronounced for chemicals with log KOA around 9-10 and log KAW -2 to -3; their average air concentrations during the growing season decreased by a factor of 5 when the canopy compartment was included. Concentration levels in virtually all compartments are decreased at the expense of increased concentrations in the forest soil. The effect of the forest lies not in a large capacity for these chemicals but in the efficiency of pumping the chemicals from the atmosphere to the forest soil, a storage reservoir with high capacity from which the chemicals can return to the atmosphere only with difficulty. Because of seasonal variability of canopy size and atmospheric stability, uptake into forests is higher during spring and summer than in winter. The model suggests that this may dampen temperature-driven seasonal fluctuations of air concentrations and in regions with large deciduous forests may lead to a temporary, yet notable dip in air concentrations during leaf development in spring. A sensitivity analysis revealed a strong effect of forest cover, forest composition, and degradation half-lives. A high degradation loss on the plant surface has the effect of preventing the saturation of the small plant reservoir and can cause very significant reductions in atmospheric concentrations of those SOCs for which uptake in the canopy is limited by the size of the reservoir.

Air Movements↗
PubMed2004

Measures of overall persistence and the temporal remote state.

The overall persistence, Pov, has been suggested as an indicator that integrates single media half-lives and phase partitioning. However, the application of this indicator is hindered by the fact that there are different definitions of Pov and that the most common measure of Pov, the residence time at steady state, depends heavily on the release pattern. Here, different measures are compared that can be used to compute Pov from the mass of a chemical in the environment as a function of time in a dynamic multimedia model. These measures include the equivalence width, which corresponds to the residence time at steady state, the mean value of the function of mass vs time ("mean time"), and the clearance time. The temporal remote state is defined as the state of the model system long after the stop of emissions; it is independent of the release pattern of a chemical. The mean time in the temporal remote state reflects the long-term removal rate of a chemical and is used as a persistence benchmark. Correlations of the three measures of Pov to the persistence benchmark are analyzed. The maximum equivalence width, which is obtained with release to one of the media air, water, or soil, is a good approximation of the mean time in the temporal remote state. Because the maximum equivalence width is identical to the maximum residence time at steady state, the mean time in the temporal remote state can be estimated with existing steady-state models.

Environmental Monitoring↗
PubMed2006

Application of multimedia models for screening assessment of long-range transport potential and overall persistence.

We propose a multimedia model-based methodology to evaluate whether a chemical substance qualifies as POP-like based on overall persistence (Pov) and potential for long-range transport (LRTP). It relies upon screening chemicals against the Pov and LRTP characteristics of selected reference chemicals with well-established environmental fates. Results indicate that chemicals of high and low concern in terms of persistence and long-range transport can be consistently identified by eight contemporary multimedia models using the proposed methodology. Model results for three hypothetical chemicals illustrate that the model-based classification of chemicals according to Pov and LRTP is not always consistent with the single-media half-life approach proposed by the UNEP Stockholm Convention and thatthe models provide additional insight into the likely long-term hazards associated with chemicals in the environment. We suggest this model-based classification method be adopted as a complement to screening against defined half-life criteria at the initial stages of tiered assessments designed to identify POP-like chemicals and to prioritize further environmental fate studies for new and existing chemicals.

Air Movements↗
PubMedDate not supplied

Surface-enhanced Raman scattering and surface-enhanced resonance Raman scattering excitation profiles of Ag-2,2'-bipyridine surface complexes and of [Ru(bpy)3]2+ on Ag colloidal surfaces: manifestations of the charge-transfer resonance contributions to the overall surface enhancement of Raman scattering.

Excitation profiles of SERS (surface-enhanced Raman scattering) and/or SERRS (surface-enhanced resonance Raman scattering) spectral bands of two forms of a Ag-bpy (bpy = 2,2'-bipyridine) surface complex and of [Ru(bpy)3]2+ on Ag nanoparticle (hydrosol) surfaces were determined from the spectra excited in the 458-600 nm region and are reported together with the FT-SERS spectra of the Ag-bpy surface complex and FT Raman spectra of [Ru(bpy)3] Cl2. Seven of the observed 11 fundamentals as well as their first overtones and combination bands are selectively enhanced in SERS of the Ag-bpy surface complex formed in the Ag colloid/HCl/bpy system. The profiles of these bands show a common maximum at approximately 540 nm. The selectively enhanced bands of the Ag-bpy surface complex have nearly the same wavenumbers as those enhanced in the SERRS and resonance Raman spectra of [Ru(bpy)3]2+ upon excitation close to the 453 nm maximum of its MLCT absorption band. Moreover, the intensity patterns of the bpy vibrations of the two species match both in resonance (541 nm excitation for Ag-bpy, 458 nm for [Ru(bpy)3]2+) and in off-resonance (458 and 1064 nm for Ag-bpy, 1064 nm for [Ru(bpy)3]2+). The distinct band shapes of the excitation profiles of the selectively enhanced vibrational modes of the Ag-bpy surface complex, as well as the observation of overtones and combination bands in the SERS spectra upon excitation into this "band", are interpreted in terms of a charge-transfer resonance contribution to the overall SERS enhancement. In view of the near-coincidence of the vibrational modes coupled to the resonant electronic transition of Ag-bpy with those coupled to the MLCT transition of [Ru(bpy)3]2+, the resonant electronic transition is tentatively assigned to a Ag metal to bpy (pi*) CT transition.

Journal Article↗
PubMed2005

RuO2-loaded beta-Ge3N4 as a non-oxide photocatalyst for overall water splitting.

Germanium nitride beta-Ge3N4 dispersed with RuO2 nanoparticles is presented as the first example of a non-oxide photocatalyst for the stoichiometric decomposition of H2O into H2 and O2. All of the successful photocatalysts developed for overall water splitting over the past 30 years have been based on oxides of metals. The discovery of a non-oxide photocatalyst, such as nitrides and oxynitrides, achieving the same function is therefore expected to stimulate research on non-oxide photocatalysts. New opportunities for progress in the development of visible light-driven photocatalysis can thus be expected, as the higher valence band positions of metal nitrides compared to the corresponding metal oxides provide narrower band gaps, which are suitable for visible light activity.

Journal Article↗
PubMed2005

Electrochemical behavior of the tris(pyridine)-Cu funnel complexes: an overall induced-fit process involving an entatic state through a supramolecular stress.

The electrochemical behavior of the tris(pyridine) calix[6]arene Cu adducts is unique as compared to that of most classical Cu complexes in a strain-free environment. The presence of MeCN buried inside the cavity is a prerequisite for a quasi-reversible behavior in a dynamic mode. The CV behavior assisted by simulation outlines that the coordination adaptability of the Cu(II)/Cu(I) redox states is completely reversed, with a Td geometry enforced at either redox states. Hence, the supramolecular control of the Cu coordination by a protein-like pocket determines the dynamics of the electron transfer process, its thermodynamics, and the kinetics of the reorganizational barrier and generates a preorganized state for oxidation. This redox behavior corresponds to an overall induced-fit process generating a truly entatic highly oxidizing Cu(II) state through a protein-like strain by involvement of the secondary coordination sphere.

Biomimetic Materials↗
PubMed2006

High-performance liquid chromatography with photodiode array detection (HPLC-DAD)/HPLC-mass spectrometry (MS) profiling of anthocyanins from Andean Mashua Tubers (Tropaeolum tuberosum Ruíz and Pavón) and their contribution to the overall antioxidant activity.

Mashua (Tropaeolum tuberosum Ruíz and Pavón), an Andean tuber with high antioxidant activity, has sparked interest because of its traditional medicinal use. In this study, we evaluated the anthocyanin composition for three purple mashua genotypes and their contribution to the overall antioxidant activity of the tuber. Mashua anthocyanins, total phenolics, and 2,2'-azinobis(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) antioxidant activity ranged from 45.5 to 131.9 mg of cyanidin 3-glucoside equivalents/100 g fresh weight (FW), 174.9 to 275.5 mg of gallic acid equivalents/100 g of FW, and 16.2 to 45.7 micromol of Trolox equivalents/g of FW, respectively. The high-performance liquid chromatography with photodiode array detection (HPLC-DAD) and HPLC-electrospray ionization tandem mass spectrometry (ESI/MS-MS) profiles revealed the presence of 11 different anthocyanins. The two major pigments (56.4-73.0% total area range at 520 nm) were identified as delphinidin 3-glucoside-5-acetylrhamnoside and delphinidin 3-sophoroside-5-acetylrhamnoside. Other pigments were delphinidin 3-glucoside-5-rhamnoside, delphinidin 3-sophoroside-5-rhamnoside, delphinidin 3-glucoside, cyanidin 3-sophoroside, and cyanidin 3-sophoroside-5-rhamnoside. Cyanidin 3-glucoside and cyanidin 3-rutinoside were only found in two genotypes, while pelargonidin 3-sophoroside and pelargonidin 3-sophoroside-5-rhamnoside were only found in the third one. Anthocyanins from mashua were the major contributors to the total ABTS values for only one of the three genotypes, suggesting that other phenolics present are playing a major role in the antioxidant power of mashua tubers. Results from this study provide important information for the Nutraceutical and Functional Food Market for the use of mashua anthocyanins not only as a source of natural colorants but also as a source of phytonutrients.

Anthocyanins↗
PubMed1975

New aromatic diamidines with central alpha-oxyalkane or alpha, omega-dioxyalkane chains. Structure-activity relationships for the inhibition of trypsin, pancreatic kallikrein, and thrombin and for the inhibition of the overall coagulation process.

A series of omega-amidinophenylalkyl amidinophenyl ethers was synthesized and examined for inhibitory activity against trypsin, pancreatic kallikrein, and thrombin. Modifications of the compounds included lengthening of the alkane chain, variation in the position of the amidino groups, and substitution of halogen on the benzene rings. The compounds act as competitive reversible inhibitors, and many of them possess considerable potency. An outstanding trypsin inhibitor was found in 4-amidinophenylethyl 4 amidino-2-bromophenyl ether (compound 7) with a Ki value of 7.3 x 10(-8) M (pH 8.1, 37 degrees). A number of aromatic diamidines with a central dioxyalkane chain were similarly studied. Here, 1-(4-amidino-2-iodophenoxy)-5-(3-amidinophenoxy)pentane (compound 32) was a highly effective inhibitor of bovine thrombin (Ki = 1.1 x 10(-6) M), of human thrombin, and of the overall clotting process of human plasma.

Amidines↗
PubMed2005

From beta-nitrothiophenes to ring-fused nitrobenzenes: an overall ring-enlargement process via a facile, aromatization-driven, thermal 6pi electrocyclization.

[reaction: see text] In prosecution of previous work on the thermal cyclization of 1-aryl-4-methanesulfonyl-2-nitro-3-phenylsulfonyl-1,3-butadienes (7), the 3-unsubstituted derivatives 8, deriving from the initial ring opening of 3-nitrothiophene (2), have been likewise found herein to undergo cyclization, followed by aromatization, in analogous mild experimental conditions, leading to the ring-fused homo- or heteroaromatic nitro derivatives 10. The concerted electrocyclic nature of the process is strongly supported by the outcome of tests based on the variation of the polarity of the solvent or of the electron density on the aryl of 8. Thus, the successful application of the process to the non-phenylsulfonyl-activated 8 significantly widens the scope of a synthetically valuable overall ring-opening/ring-closing procedure from nitrothiophenes. Support to the recently renewed interest in thermal 6pi electrocyclizations as a tool for the construction of the benzene ring is furthermore provided.

Journal Article↗
PubMed2005

Overall rate constant measurements of the reaction of chloroalkylperoxy radicals with nitric oxide.

The overall rate constants of the NO reaction with chloroalkylperoxy radicals derived from the Cl-initiated oxidation of several atmospherically abundant alkenes-ethene, propene, 1-butene, 2-butene, 2-methylpropene, 1,3-butadiene, and isoprene (2-methyl-1,3-butadiene)-were determined for the first time via the turbulent flow technique and pseudo-first-order kinetics conditions with high-pressure chemical ionization mass spectrometry for the direct detection of chloroalkylperoxy radical reactants. The individual 100 Torr, 298 K rate constants for each monoalkene system were found to be identical within the 95% confidence interval associated with each separate measurement, whereas the corresponding rate constants for 1,3-butadiene and isoprene were both approximately 20% higher than the monoalkene mean value. Our previous study of the reaction of hydroxylalkylperoxy radicals (derived from the OH-initiated oxidation of alkenes) with NO yielded identical rate constants for all of the alkenes under study, with a rate constant value within the statistical uncertainty of the value determined here for the NO reaction of chloroalkylperoxy radicals derived from monoalkenes. Thus, the reaction of NO with chloroalkylperoxy radicals derived from dialkenes is found to be significantly faster than the NO reaction with either chloroalkylperoxy radicals derived from monoalkenes or hydroxyalkylperoxy radicals derived from either mono- or dialkenes.

Journal Article↗
PubMed2005

Photocatalyst of lamellar aggregates of RuOx-loaded perovskite nanosheets for overall water splitting.

Overall photocatalytic splitting of water was achieved using a restacked aggregate of exfoliated nanosheets of Ca(2)Nb(3)O(10), which was synthesized by flocculating a colloidal suspension of the nanosheets with alkali-metal ions and a trace amount of ruthenium red, a trinuclear complex of ([(NH(3))(5)Ru-O-Ru(NH(3))(4)-O-Ru(NH(3))(5)]Cl(6). The as-restacked material showed the evolution of H(2) gas from water immediately after UV irradiation, while O(2) evolution was observed only after some induction time, which may be understood by the possible oxidation of ruthenium red to RuO(x) in the initial stage. The restacked aggregate, which was heated at 773 K to convert the ruthenium complex to the oxide, underwent the stoichiometric splitting of water upon initiation of UV illumination, verifying the hypothesis. Total decomposition of water could not be attained with the bulk layered host of KCa(2)Nb(3)O(10) as well as its RuO(x)-loaded forms obtained via a conventional impregnation procedure. This clearly demonstrates the effectiveness of the present exfoliation-restacking route for loading RuO(x) to improve and enhance the photocatalytic activities of layered semiconducting materials. A homogeneous distribution of RuO(x)was suggested by XPS depth-profile analysis on the materials obtained through the exfoliation-restacking process.

Journal Article↗
PubMed2005

Overall water splitting on (Ga(1-x)Zn(x))(N(1-x)O(x)) solid solution photocatalyst: relationship between physical properties and photocatalytic activity.

The physical and photocatalytic properties of a novel solid solution between GaN and ZnO, (Ga(1-x)Zn(x))(N(1-x)O(x)), are investigated. Nitridation of a mixture of Ga(2)O(3) and ZnO at 1123 K for 5-30 h under NH(3) flow results in the formation of a (Ga(1-x)Zn(x))(N(1-x)O(x)) solid solution with x = 0.05-0.22. With increasing nitridation time, the zinc and oxygen concentrations decrease due to reduction of ZnO and volatilization of zinc, and the crystallinity and band gap energy of the product increase. The highest activity for overall water splitting is obtained for (Ga(1-x)Zn(x))(N(1-x)O(x)) with x = 0.12 after nitridation for 15 h. The crystallinity of the catalyst is also found to increase with increasing the ratio of ZnO to Ga(2)O(3) in the starting material, resulting in an increase in activity.

Journal Article↗
PubMed2005

Characterization of ruthenium oxide nanocluster as a cocatalyst with (Ga(1-x)Zn(x))(N(1-x)Ox) for photocatalytic overall water splitting.

The formation and structural characteristics of Ru species applied as a cocatalyst on (Ga(1)(-)(x)()Zn(x)())(N(1)(-)(x)()O(x)()) are examined by scanning electron microscopy, X-ray photoelectron spectroscopy, and X-ray absorption spectroscopy. RuO(2) is an effective cocatalyst that enhances the activity of (Ga(1)(-)(x)()Zn(x)())(N(1)(-)(x)()O(x)()) for overall water splitting under visible-light irradiation. The highest photocatalytic activity is obtained for a sample loaded with 5.0 wt % RuO(2) from an Ru(3)(CO)(12) precursor followed by calcination at 623 K. Calcination is shown to cause the decomposition of initial Ru(3)(CO)(12) on the (Ga(1)(-)(x)()Zn(x)())(N(1)(-)(x)()O(x)()) surface (373 K) to form Ru(IV) species (423 K). Amorphous RuO(2) nanoclusters are then formed by an agglomeration of finer particles (523 K), and the nanoclusters finally crystallize (623 K) to provide the highest catalytic activity. The enhancement of catalytic activity by Ru loading from Ru(3)(CO)(12) is thus shown to be dependent on the formation of crystalline RuO(2) nanoparticles with optimal size and coverage.

Journal Article↗
PubMed2006

Characterization of Rh-Cr mixed-oxide nanoparticles dispersed on (Ga(1-x)Zn(x))(N(1-x)Ox) as a cocatalyst for visible-light-driven overall water splitting.

The structure of Rh-Cr mixed-oxide (Rh(2)(-)(y)Cr(y)O(3)) nanoparticles dispersed on (Ga(1)(-)(x)Zn(x))(N(1)(-)(x)O(x)) is characterized by electron microscopy and X-ray spectroscopy. The Rh(2)(-)(y)Cr(y)O(3) nanoparticle is an efficient cocatalyst for photocatalytic overall water splitting on the (Ga(1)(-)(x)Zn(x))(N(1)(-)(x)O(x)) solid solution and is loaded onto the catalyst by impregnation from an aqueous solution containing Na(3)RhCl(6).2H(2)O and Cr(NO(3))(3).9H(2)O followed by calcination in air. Impregnation of the (Ga(1)(-)(x)Zn(x))(N(1)(-)(x)O(x)) with 1 wt % Rh and 1.5 wt % Cr followed by calcination at 623 K for 1 h provides the highest photocatalytic activity. Structural analyses reveal that the activity of this photocatalyst is strongly dependent on the generation of trivalent Rh-Cr mixed-oxide nanoparticles with optimal composition and distribution.

Journal Article↗
PubMed1998

A simplified method of calculating an overall goodness-of-fit test for the Cox proportional hazards model.

Grønnesby and Borgan (1996) propose an overall goodness-of-fit test for the Cox proportional hazards model. The basis of their test is a grouping of subjects by their estimated risk score. We show that the Grønnesby and Borgan test is algebraically identical to one obtained from adding group indicator variables to the model and testing the hypothesis the coefficients of the group indicator variables are zero via the score test. Thus showing that the test can be calculated using existing software. We demonstrate that the table of observed and estimated expected number of events within each group of the risk score is a useful adjunct to the test to help identify potential problems in fit.

Clinical Trials as Topic↗
PubMed1989

Receptor-mediated transport of peptide hormones and its importance in the overall hormone disposition in the body.

A remarkable feature of the pharmacokinetics of polypeptide hormones is the contribution of specific binding sites (receptors) to the polypeptide hormone distribution and clearance in the body. The concept of "transport receptor" is now well established, and receptor-mediated endocytosis (RME) is recognized as a general mechanism in the uptake of biologically important peptide hormones. This article focuses on the kinetic analysis of the RME of polypeptides, based mainly upon the observations of the kinetics of epidermal growth factor in the liver. The following points are emphasized: (1) How can we determine the existence and the kinetic constants of polypeptide RME in vivo and in the perfused liver system? A liver perfusion method, the single-pass multiple-indicator dilution technique, has been shown to be suitable for analyzing the dynamics of interaction of peptide hormones with their cell surface receptors. (2) What is the importance of down-regulation of transport receptors to the overall kinetics of polypeptides in vivo? Time profiles of polypeptide plasma concentrations and their surface receptors in the liver after iv administration of epidermal growth factor were simulated with a physiologic pharmacokinetic model that includes kinetic constants representing the interaction of polypeptides and their receptors.

Animals↗
PubMed1996

Uptake is the rate-limiting step in the overall hepatic elimination of pravastatin at steady-state in rats.

PURPOSE: Of the HMG-CoA reductase inhibitors, the hydrophilic pravastatin has been shown to exhibit relatively specific inhibition of cholesterol synthesis in the liver. As one of the reasons for this relatively specific pharmacological activity, we demonstrated that the tissue distribution of pravastatin is limited because of its high hydrophilicity, while hepatic uptake by active transport takes place at the liver surface via a multispecific anion transporter (M. Yamazaki et al., Am. J. Physiol., 264, G36-44, 1993). In this study, we examined the hepatic elimination of pravastatin at steady-state. METHODS: After i.v. infusion, the plasma concentrations of pravastatin in both arterial and hepatic venous blood were measured. RESULTS: The hepatic availability at steady-state exhibited a clear increase on increasing the infusion rate of pravastatin. The total hepatic elimination rate at steady-state exhibited Michaelis-Menten type saturation with the drug concentration in the capillary defined by typical mathematical models (i.e., well-stirred, parallel-tube and dispersion models), K(m) and Vmax values being comparable with those obtained from analysis of the initial uptake velocity using in vitro isolated hepatocytes. CONCLUSIONS: These results indicate that overall hepatic intrinsic clearance of pravastatin at steady-state is regulated by the uptake process, followed by rapid metabolism and/or biliary excretion with minimal efflux to the circulating blood.

Animals↗