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Effect of polymer ionization on the interaction with DNA in nonviral gene delivery systems.

The optimization of DNA-cationic polymer complexation is crucial for nonviral gene delivery. Although physicochemical characterization of the interaction between DNA and cationic polymers has recently attracted more attention in the nonviral DNA delivery field, the literature on the effect of varying polycation charge density on DNA-cationic polymer complexation is still scarce. Thus, the aim of this study was to systematically assess the influence of the degree of ionization of a weak cationic polyelectrolyte (poly[2-(dimethylamino)ethyl methacrylate] or DMAEMA homopolymer) on its ability to form complexes with DNA. This was achieved by varying the solution pH from 4.0 to 8.0 and analyzing the resulting effects on the binding affinity, thermodynamic properties, complex size, and morphology. Lowering the solution pH led to higher degrees of ionization for the cationic polymer and hence greater binding affinities with DNA, as judged by the increased propensity of the former to displace ethidium bromide from DNA and also by relatively low monomer:nucleotide molar ratio (0.8:1) required to retard the migration of free DNA. Isothermal titration microcalorimetry studies further confirmed that a stronger interaction occurred at low pH than at high pH. By decreasing the pH from 8.0 to 6.6, K(obs) increased from 7.8 x 10(5) to 20.4 x 10(5) M(-1). More efficient condensation at low pH was demonstrated by the reduction of ethidium bromide fluorescence in the loading wells from gel electrophoresis, decreased complex sizes without agglomeration occurring at high polymer/DNA ratios, together with discrete and dense spherical complexes observed in TEM studies. This may be attributed to the presence of electrostatic stabilization from excess cationic polymer chains, which provide a repulsive shell around the polymer/DNA complex. The physicochemical data indicate that the increased degree of ionization for the DMAEMA homopolymer at lower pH results in higher binding affinity, smaller and more compact complexes, and more efficient condensation. These findings therefore highlight the importance of the degree of ionization on DNA complex formation for weak cationic polyelectrolytes.

Animals↗

Electronegativities from core-ionization energies: electronegativities of SF5 and CF3.

Core-ionization energies have been measured for SF(6) (S 2p), SF(5)SF(5) (S 2p), SF(5)Br (S 2p and Br 3d), and SF(5)CF(3) (S 2p and C 1s). These results, together with others that establish correlations between core-ionization energies and Pauling electronegativities, make it possible to assign group electronegativities to SF(5) and CF(3). This method gives electronegativities for these groups comparable to that of bromine, whereas analysis of the effect of these groups on acidity indicates electronegativities comparable to that of fluorine. Other methods of estimating electronegativity fall between these extremes. These disparities can be understood in part as reflecting the effects of polarizibility of the substituent, which tends to lower both the core-ionization energy and the deprotonation energy, making the electronegativity appear to be less in one case and more in the other. In addition, and possibly more important, the core-ionization energies presented here reflect the effect of the group on an adjacent atom, whereas the acidity reflects the effect on a remote atom. It appears that fluorine has a large effect on an adjacent atom but a relatively small effect on a remote atom. By contrast SF(5) and CF(3) have a relatively small effect on an adjacent atom, but this effect falls off only slowly with distance from the substituent. Thus, the effective electronegativities of CF(3) and SF(5) relative to those of the halogens depend on the site at which the molecule is probed as well as on the process that is under consideration.

Journal Article↗

Photoelectron Spectra of Trimethylphosphine-Substituted Tungsten Carbonyls: Ligand Field Effects, Ligand Additivity Effects, and Core-Valence Ionization Correlations.

High-resolution broad-scan gas-phase photoelectron spectra using synchrotron radiation (including valence, inner valence, and core levels) are reported for a series of trimethylphosphine-substituted tungsten carbonyls: W(CO)(6), W(CO)(5)PMe(3), cis-W(CO)(4)(PMe(3))(2), trans-W(CO)(4)(PMe(3))(2), and fac-W(CO)(3)(PMe(3))(3). The inner valence and core level spectra are interpreted by comparison with the published spectra of W(CO)(6) and other metal carbonyls. High-resolution valence level spectra of these complexes are also obtained by He I radiation. Fine structure, resulting from spin-orbit splitting, ligand field splittings, and vibrational coupling is resolved in the spectra of both W 5d and W 4f regions. Ligand field splittings on both the W 5d and W 4f levels increase in the order W(CO)(6) approximately fac-W(CO)(3)(PMe(3))(3) < W(CO)(5)PMe(3) </= cis-W(CO)(4)(PMe(3))(2) < trans-W(CO)(4)(PMe(3))(2). For the first time, the phosphorus 2p spin-orbit components of the phosphine complexes have been resolved. The binding energies (or ionization potentials) in the spectra of both W 5d valence level and W 4f core level regions are shifted almost linearly to lower energy with each successive step of ligand substitution. The shift per phosphine substitution is 0.66 +/- 0.03 eV for the W 5d ionizations and 0.76 +/- 0.03 eV for the W 4f ionizations (DeltaE(valence)/DeltaE(core) = 0.86 +/- 0.03). Similar linear shift trends are also found in the phosphorus 2p core level and phosphorus valence "lone-pair" ionizations. These data confirm the ligand additivity model predictions for these complexes.

Journal Article↗

Ice-catalyzed ionization of hydrochloric acid.

Ionization of hydrochloric acid (HCl) on stratospheric ice particles is believed to be a key step in the depletion of stratospheric ozone. Ab initio calculations based on a model HCl-water cluster show that HCl ionization on ice surfaces is a barrierless process. Since this mechanism is rapid and produces chloride anions that are exposed to ambient stratospheric chlorine reservoir molecules, it is likely to be important for stratospheric chemistry. It complements a previously suggested mechanism where HCl forms part of the ice lattice before ionizing. The mechanism proposed here is also consistent with experimentally observed ionization of HCl on ice at low temperatures and under vacuum, where the HCl is not expected to be encapsulated in the ice lattice.

Journal Article↗

Vibrational progressions in the valence ionizations of transition metal hydrides: evaluation of metal-hydride bonding and vibrations in (eta(5)-C(5)R(5))Re(NO)(CO)H [R = H, CH(3)].

The first examples of vibrational structure in metal-ligand sigma-bond ionizations are observed in the gas-phase photoelectron spectra of CpRe(NO)(CO)H and CpRe(NO)(CO)H [Cp = eta(5)-C(5)H(5), Cp = eta(5)-C(5)(CH(3))(5)]. The vibrational progressions are due to the Re-H stretch in the ion states formed by removal of an electron from the predominantly Re-H sigma-bonding orbitals. A vibrational progression is also observed in the corresponding ionization of the deuterium analogue, CpRe(NO)(CO)D, but with lower vibrational energy spacing as expected from the reduced mass effect. The vibrational progressions in these valence ionizations are directly informative about the nature of the metal-hydride bonding and electronic structure in these molecules. Franck-Condon analysis shows that for these molecules the Re-H or Re-D bond lengthens by 0.25(1) A when an electron is removed from the Re-H or Re-D sigma-bond orbital. This bond lengthening is comparable to that of H(2) upon ionization. Removal of an electron from the Re-H or Re-D bonds leads to a quantum-mechanical inner sphere reorganization energy (lambda(QM)) of 0.34(1) eV. These observations suggest that even in these low symmetry molecules the orbital corresponding to the Re-H sigma bond and the Re-H vibrational mode is very localized. Theoretical calculations of the electronic structure and normal vibrational modes of CpRe(NO)(CO)H support a localized two-electron valence bond description of the Re-H interaction.

Journal Article↗

New Proton-Ionizable Lariat Ethers with Picrylamino-Type Side Arms and Their Alkali Metal Salts. Synthesis and Structural Studies(1).

Twelve novel proton-ionizable dibenzo lariat ethers with picrylamino-type sidearms attached to the central carbon of a three-carbon bridge have been prepared in high yields by a three-step synthesis from the lariat ether alcohols via the corresponding lariat ether mesylates and amines. Structural studies conducted in solution by (1)H NMR spectroscopy and in the solid state by X-ray diffraction show that the picrylamino-type lariat ethers are preorganized for metal ion complexation with the sidearms oriented toward the macrocyclic polyether cavities due to intramolecular NH.O bonding. Structural investigations of the alkali metal salts of representative ionized picrylamino-lariat ethers in solution demonstrate cooperative coordination of the metal cation by the macrocyclic polyether unit and the ionized sidearm that serves as the counterion with the negative charge localized on the one of o-nitro groups. In the Li(+) salt of ionized sym-(picrylamino)dibenzo-14-crown-4, this places the aromatic ring of the sidearm perpendicular to the plane of the four ring oxygens.

Journal Article↗

Reactivity and core-ionization energies in conjugated dienes. Carbon 1s photoelectron spectroscopy of 1,3-pentadiene.

The high-resolution carbon 1s photoelectron spectrum of trans-1,3-pentadiene has been resolved into contributions from the five inequivalent carbon atoms, and carbon 1s ionization energies have been assigned to each of these atoms. Spectra have also been measured for propene and 1,3-butadiene at better resolution than has previously been available. The ionization energies for the sp2 carbons are found to correlate well with activation energies for electrophilic addition and with proton affinities. Comparing the results for 1,3-pentadiene with those for ethene, propene, and 1,3-butadiene as well as with results of theoretical calculations makes it is possible to assess the effect of the terminal methyl group in 1,3-pentadiene. As in propene, the methyl group contributes electrons to the beta carbon through the pi system. In addition, there is a significant (though smaller) contribution from the methyl group to the terminal (delta) CH2 carbon, also through the pi system. Most of the effect of the methyl group is present in the ground-state molecule. There are only relatively small contributions from the methyl group to the ionization energies from redistribution of charge in the pi system in response to the removal of a core electron. In addition to these specific effects, there is an overall decrease in average ionization energy as the size of the molecule increases as well as effects that are specific to the conjugated systems in 1,3-butadiene and 1,3-pentadiene. The results provide insight into the reactivity and regioselectivity of conjugated dienes.

Journal Article↗

What ion is generated when ionizing acetonitrile?

It has long been assumed that ionizing neutral acetonitrile produces ions with the same atomic connectivity, CH(3)CN(+*). Recent calculations on the C(2)H(3)N(+*) potential energy surface have suggested that it may be difficult to generate pure CH(3)CN(+*) when ionizing acetonitrile. We have probed the interconversion of CH(3)CN(+*) and its lower energy isomer CH(2)CNH(+*) by calculation, collision-induced dissociation mass spectrometry and ion-molecule reaction. The latter ion, ionized ketenimine, is co-generated upon electron or chemical ionization of neutral acetonitrile in the ion source of a mass spectrometer. An estimate of the ratio of the two isomers can be obtained from their respective ion-molecule reactions with CO(2) or COS. CH(3)CN(+*) reacts by proton-transfer with CO(2) and charge transfer with COS, whereas CH(2)CNH(+*) is unreactive.

Acetonitriles↗

Effects of polarization of 1.4 microm femtosecond laser pulses on the formation and fragmentation of naphthalene molecular ions compared at the same effective ionization intensity.

Naphthalene was ionized with 130 fs pulses of different polarizations at 1.4 microm. In contrast to the results of ionization by 0.8 microm pulses, fragmentation was dramatically suppressed and naphthalene molecular ions of up to 3+ were produced. The use of this simple model of ionization and large electron kinetic energy enabled us to study the electron-recollision-induced fragmentation and/or double ionization more precisely. The failure of the theoretical prediction of ion yield for the case of naphthalene prevented us from judging the electron recollision solely by a comparison with theoretical curves. Therefore, the effects of laser polarization on the ratios between differently charged states and between molecular and total ions were compared at the same effective (peak) intensity instead of average intensity. Comparison under the same effective intensity enabled us to identify the effects of ellipticity clearly. Evidence of the electron recollision was found in the doubly charged molecular ion formation but not in the fragmentation. The single-electron recollision event was not sufficient to induce fragmentation because of its low energy transfer efficiency. We concluded that the fragmentation originated in the unstable nature of the highly charged molecular ion itself and in the Coulomb explosion in the case of naphthalene.

Journal Article↗

Controversy on the first ionization potential of PuO2 (nearly) settled by new experimental evidence.

The first ionization potential of the PuO2 molecule was for a long time considered to be 4-5 eV higher than that of UO2. This feature could hardly be explained by the most advanced "ab initio" calculations, which, on the other hand, provide satisfactory results for other actinide oxides. From recent experiments, performed with different techniques, a lower ionization potential of approximately 7 eV was measured, in better agreement with the theoretical predictions. Our recent experiments, where thermally produced ions were measured, make it possible to formulate an accurate relation between the ionization potential of PuO2 and that of PuO: I0(PuO2) = I0(PuO) + 0.42 +/- 0.005 eV. The present uncertainty of I0(PuO) leads to the final assessment, 6.2 < or = I0(PuO2) < or = 6.6 eV, whereby the upper limit is more in line with the aforementioned recent measurements. Considering the still existing uncertainties, one can conclude that these results remove major doubts on the validity of the current theoretical predictions. However, the very small ionization cross section of PuO2 by low-energy electron collisions, which led to the previous spurious assessment of the ion appearance potential, has still an unexplained cause.

Journal Article↗

High-LET radiolysis of liquid water with 1H+, 4He2+, 12C6+, and 20Ne9+ ions: effects of multiple ionization.

Monte Carlo simulations are used to investigate the effects of multiple ionization of water molecules on the yields of formation of free radical and molecular species, including molecular oxygen, in the radiolysis of pure, deaerated liquid water by using different types of radiation (1H+, 4He2+, 12C6+, and 20Ne9+ ions) up to approximately 900 keV/microm, at neutral pH and 25 degrees C. Taking into account the double, triple, and quadruple ionizations of water, the primary (or "escape") yields (at 10(-6) s) of the various radiolytic species (G(e(aq)-), G(H*), G(H2), G(*OH), G(HO2*/O2*-), and G(H2O2) are calculated as a function of the linear energy transfer (LET) of the radiation. Our results quantitatively reproduce the large increase observed in G(HO2*/O2*-) at high LET. Under the conditions of this study, the mechanisms of triple and quadruple ionizations contribute only weakly to the production of HO2*/O2*-. With the exception of protons, our calculations also simultaneously predict a maximum in G(H2O2) corresponding to the LET of approximately 4.5-MeV helium ions (approximately 100 keV/microm) and approximately 110-MeV carbon ions (approximately 180 keV/microm). This maximum occurs where G(HO2*/O2*-) begins to rise sharply, suggesting, in agreement with previous experimental data, that the yields of HO2*/O2*- and H2O2 are closely linked. Moreover, our results show a steep increase in the initial and primary yields of molecular oxygen with increasing LET, giving support to the "oxygen in heavy-ion tracks" hypothesis. By contrast, it is found that, in the whole LET range considered, the incorporation of multiple ionization in the simulations has only little effect on the variation of our computed G(e(aq)-), G(H*), G(H2), and G(*OH) values as a function of LET. As expected, G(e(aq)-) and G(*OH) decrease continuously with increasing LET. G(H*) at first increases and then decreases at high LET. Finally, G(H2) monotonically rises with increasing LET. Our calculated yield values compare generally very well with experiment.

Carbon↗

Using a charging coordinate in studies of ionization induced partial unfolding.

The ionization of groups in proteins may sometimes involve a partial unfolding and/or water penetration. Unfortunately the corresponding structural changes might not be captured by microscopic free energy perturbation (FEP) approaches due to activation barriers that are not surmounted in nanosecond FEP simulations. This problem is apparent, for example, from mutation experiments that introduced ionizable groups in protein interiors and from the difficulties to reproduce the corresponding pKa changes by microscopic approaches. Here we develop a new general approach for treating such challenging cases. Our approach drives the protein structural change by increasing the charge of the ionized group beyond its physical value and thus overcoming the barriers for the partial unfolding by a physically consistent process. The potential of our approach is illustrated by the evaluation of the pKa of the Val66Glu mutant of staphylococcal nuclease. In this case it is first demonstrated that standard FEP approaches give extremely disappointing results for this pKa. On the other hand, our "overcharging" approach gives a much more realistic result. We believe that the present approach represents a breakthrough in FEP studies of ionizable residues in proteins, and expect this strategy to be useful in studies of a wide range of challenging problems including simulations of hydrogen exchange processes.

Hydrogen↗

Degree of micelle ionization and micellar growth for gemini surfactants detected by 6-methoxy-N-(3-sulfopropyl)quinolinium fluorescence quenching.

The degree of micelle ionization of gemini surfactants has been investigated by using halide-sensitive fluorescence probes (e.g., 6-methoxy-N-(3-sulfopropyl)quinolinium (SPQ)). The fluorescence is quenched by the free bromide ions dissociated from surfactants. The degree of micelle ionization increased with increasing spacer chain length, but it decreased with increasing surfactant concentration. The Stern-Volmer plot gave two inflection points (i.e., not only at the cmc but also far above the cmc). The second inflection point suggested spherocylindrical micellar growth with decreases in the degree of micelle ionization. The spherocylindrical micellar growth was depressed with increasing spacer chain length, whereas it was enhanced with increasing tail chain length. The degree of micelle ionization of spherocylindrical micelles depended on the concentration and chain length of gemini surfactants. The change in SPQ fluorescence spectra upon hydrogenation was utilized to evaluate the solubilization site in micelle solutions. The dissolved SPQ in water was instantly reduced by the addition of NaBH4, resulting in abrupt changes in fluorescence intensity and spectral shift. All of the SPQ in micelle solution was also instantly reduced by NaBH4, indicating the existence of SPQ in the water bulk phase, but its fluorescence intensity increased upon the solubilization of hydrogenated SPQ into micelles.

Borohydrides↗

Protective effects of melatonin against oxidation of guanine bases in DNA and decreased microsomal membrane fluidity in rat liver induced by whole body ionizing radiation.

The aim of the study was to examine the potential protective effect of melatonin against whole body ionizing radiation (800 cGy). Changes in 8-hydroxy-2'-deoxyguanosine (8-OH-dG) levels, an index of DNA damage, and alterations in membrane fluidity (the inverse of membrane rigidity) and lipid peroxidation in microsomal membranes, as indices of damage to lipid and protein molecules in membranes, were estimated. Measurements were made in rat liver, 12 h after their exposure to radiation. To test the potential protective effects of melatonin, the indole was injected (i.p. 50 mg/kg b.w.) at 120, 90, 60 and 30 min prior to radiation exposure. Both 8-OH-dG levels and microsomal membrane rigidity increased significantly 12 h after radiation exposure. Melatonin completely counteracted the effects of ionizing radiation. Changes in 8-OH-dG levels and membrane fluidity are early sensitive parameters of DNA and microsomal membrane damage, respectively, induced by ionizing radiation and our findings document the protective effects of melatonin against ionizing radiation.

8-Hydroxy-2'-Deoxyguanosine↗

Ionization and solubilization of 4 alkyl benzoic acids and 4 alkyl anilines in sodium taurodeoxycholate solutions.

PURPOSE: The aqueous solubility and the extent of solubilization and ionization constant in sodium taurodeoxycholate (NaTDC) solutions of a series of benzoic acid and aniline derivatives were measured as a basis to characterize and thereby help predict the nature of the interaction of drugs with bile aggregates. METHODS: The aqueous solubility and the solubilization of two series of compounds, 4-alkyl benzoic acids and 4-alkyl anilines, was measured as a function of NaTDC in 0 and 150 mM NaCl. The ionization constants were determined in water and in 50 mM NaTDC at sodium chloride concentration of 0, 75 and 150 mM by spectrophotometric titration. The diffusion coefficients of NaTDC and the solutes were measured by pulsed-field gradient spin echo NMR spectroscopy. RESULTS: The aqueous solubilities decreased with increasing alkyl chain length in both series, and the aniline derivatives had larger solubilities than the benzoic acid derivatives. The number of moles of solute solubilized per mole of bile salt ranged from 0.17 to 0.31 for the benzoic acid derivatives and from 1.3 to 3.0 for the aniline derivatives. The pKa values of the benzoic acid derivatives in the presence of NaTDC were higher relative to the controls, and the difference in the pKa (delta pKa,obs) increased with increasing chain length. With the aniline derivatives, the pKa values were also shifted to higher values in NaTDC relative to the control but only in the absence of salt. The presence of the solute caused a decrease in the diffusion coefficient of NaTDC, and the diffusion coefficients of the solutes decreased with increasing alkyl chain length. With the hexyl derivative, the diffusion coefficient of the solute was smaller than the diffusion coefficient of the bile salt. The chemical shift of the protons attached to carbon 18 and 19 of the salt were decreased to a greater extent in the presence of the solutes than the protons attached to carbon 26. CONCLUSION: Both the solubilization and ionization behavior of solutes were affected by the presence of bile salt aggregates. The surface potential and effective polarity of NaTDC aggregates were found to be dependent on the alkyl chain length for these two homologous series of solutes. The solubilization ratio was largely independent of alkyl chain length, but the unitary partition coefficient was dependent on both alkyl chain length as well as ionization state. The derivatives reduced the diffusivity of the micelles suggesting the formation of larger size aggregates and the solutes (hexyl derivatives) appear to favor association with the larger sized aggregates. The phenyl ring of the solutes appears to be oriented parallel to the plane of the steroid frame with preferential positioning near the hydrophobic rings.

Aniline Compounds↗

Discrete stages in the solvation and ionization of hydrogen chloride adsorbed on ice particles.

Ionization and dissociation reactions play a fundamental role in aqueous chemistry. A basic and well-understood example is the reaction between hydrogen chloride (HCl) and water to form chloride ions (Cl(-)) and hydrated protons (H(3)O(+) or H(5)O(2)(+)). This acid ionization process also occurs in small water clusters and on ice surfaces, and recent attention has focused on the mechanism of this reaction in confined-water media and the extent of solvation needed for it to proceed. In fact, the transformation of HCl adsorbed on ice surfaces from a predominantly molecular form to ionic species during heating from 50 to 140 K has been observed. But the molecular details of this process remain poorly understood. Here we report infrared transmission spectroscopic signatures of distinct stages in the solvation and ionization of HCl adsorbed on ice nanoparticles kept at progressively higher temperatures. By using Monte Carlo and ab initio simulations to interpret the spectra, we are able to identify slightly stretched HCl molecules, strongly stretched molecules on the verge of ionization, contact ion pairs comprising H(3)O(+) and Cl(-), and an ionic surface phase rich in Zundel ions, H(5)O(2)(+).

Journal Article↗

Enforced CDK4 expression in a hematopoietic cell line confers resistance to the G1 arrest induced by ionizing radiation.

In hematopoietic cells, gamma-irradiation causes a p53-dependent transient G1 phase cell cycle arrest. Various extracellular growth inhibitory signals elicit G1 arrest by targeting CDK4. Here we show that in a myeloid cell line, 32D cl 3, enforced expression of CDK4, but not cyclins D2 nor D3, overrides the gamma-irradiation-induced G1 arrest. CDK4 does not confer resistance to the radiation-induced G2 block observed in parental cells. Ectopic expression of CDK4 overcomes the ionizing radiation-induced inhibition of CDK4 and CDK2 kinase activity. The levels of CDK4 protein do not change after exposure to ionizing radiation in either parental cells or those overexpressing CDK4. Ionizing radiation induces the expression of both p53 and p21, and in cells constitutively synthesizing exogenous CDK4, the return of p53 protein levels to baseline is prolonged. Increased levels of p21 are found associated with CDK4, and not CDK2, in the lines overexpressing CDK4, compared to the parental line, after exposure to ionizing radiation. Enforced expression of CDK4 may therefore overcome a gamma-irradiation-induced G1 arrest through the titration of the CDK inhibitor p21 allowing both CDK4 and CDK2 to remain active.

Animals↗

Determination of pentachlorophenol by negative ion chemical ionization with membrane introduction mass spectrometry.

Pentachlorophenol (PCP) was used as a model compound to explore the potential of desorption chemical ionization (DCI) in the determination of polychlorinated pesticides using membrane introduction mass spectrometry (MIMS). A direct insertion membrane probe was modified so that a chemical ionization plasma could be established at the membrane surface. Using selected ion monitoring (SIM) in a tandem triple quadrupole mass spectrometer with isobutane chemical ionization (CI), the PCP detection limit under positive chemical ionization is 20 ppb whereas negative CI gives detection limits in the low ppb range. This performance is achieved without any pre-treatment or derivatization of the sample. Negative ion CI gives a signal that is linear over a concentration range of 2-1000 ppb. Comparison of data obtained with low ppb samples of 2,4,6-trichlorophenol, 2,3,4,6-tetrachlorophenol and pentachlorophenol suggests that the sensitivity of this analytical procedure increases with increase in the number of electronegative substituents in the molecule.

Food Contamination↗