Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “FIRS”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 811 records · Page 45Linked to original sources
PubMed1998

Adaptive stimulus artifact reduction in noncortical somatosensory evoked potential studies.

Somatosensory evoked potentials (SEP's) are an important class of bioelectric signals which contain clinically valuable information. The surface measurements of these potentials are often contaminated by a stimulus evoked artifact. The stimulus artifact (SA), depending upon the stimulator and measurement system characteristics, may obscure some of the information carried by the SEP's. Conventional methods for SA reduction employ hardware-based circuits which attempt to eliminate the SA by blanking the input during SA period. However, there is a danger of losing some of the important SEP information, especially if the stimulating and recording electrodes are close together. In this paper, we apply both linear and nonlinear adaptive filtering techniques to the problem of SA reduction. Nonlinear adaptive filters (NAF's) based on truncated second-order Volterra series expansion are discussed and their applicability to SA cancellation is explored through processing both simulated and in vivo SEP data. The performances of the NAF and the finite impulse response (FIR) linear adaptive filter (LAF) are compared by processing experimental SEP data collected from different recording sites. Due to the inherent nonlinearities in the generation of the SA, the NAF is shown to achieve significantly better SA cancellation compared to the LAF.

Algorithms↗
PubMed1999

A pacemaker working status telemonitoring algorithm.

To extend the application of a previously developed home ECG and blood pressure telemonitoring system for pacemaker users, a specially designed pacemaker working status analysis algorithm is developed in this paper. This paper includes four sections. First, a pacing beat and spontaneous beat recognition algorithm are established in which a FIR filter and three threshold methods are used to pick up the pacing spikes and a dynamic threshold modification method is proposed for error elimination. Second, a beat classification algorithm is developed based on decision rules for six commonly used pacemaker types. Third, a pacemaker malfunction recognition algorithm is established to evaluate the pacemaker working status. Fourth, the statistics of the analysis and the report are also provided. To validate the algorithm, clinical data were collected and manually classified by specialists. Then, the classification and recognition results were obtained with the clinical data. Results show that the algorithm can achieve a recognition rate of 98.4%. Results also indicate that the algorithm is capable of working in real-time speed. The algorithm has been incorporated into the telemonitoring system, and trial application cases are also reported.

Algorithms↗
PubMed2006

Prediction of intrauterine pressure from electrohysterography using optimal linear filtering.

We propose a method of predicting intrauterine pressure (IUP) from external electrohysterograms (EHG) using a causal FIR Wiener filter. IUP and 8-channel EHG data were collected simultaneously from 14 laboring patients at term, and prediction models were trained and tested using 10-min windows for each patient and channel. RMS prediction error varied between 5-14 mmHg across all patients. We performed a 4-way analysis of variance on the RMS error, which varied across patients, channels, time (test window) and model (train window). The patient-channel interaction was the most significant factor while channel alone was not significant, indicating that different channels produced significantly different RMS errors depending on the patient. The channel-time factor was significant due to single-channel bursty noise, while time was a significant factor due to multichannel bursty noise. The time-model interaction was not significant, supporting the assumption that the random process generating the IUP and EHG signals was stationary. The results demonstrate the capabilities of optimal linear filter in predicting IUP from external EHG and offer insight into the factors that affect prediction error of IUP from multichannel EHG recordings.

Algorithms↗
PubMed2006

A new way for multidimensional medical data management: volume of interest (VOI)-based retrieval of medical images with visual and functional features.

The advances in digital medical imaging and storage in integrated databases are resulting in growing demands for efficient image retrieval and management. Content-based image retrieval (CBIR) refers to the retrieval of images from a database, using the visual features derived from the information in the image, and has become an attractive approach to managing large medical image archives. In conventional CBIR systems for medical images, images are often segmented into regions which are used to derive two-dimensional visual features for region-based queries. Although such approach has the advantage of including only relevant regions in the formulation of a query, medical images that are inherently multidimensional can potentially benefit from the multidimensional feature extraction which could open up new opportunities in visual feature extraction and retrieval. In this study, we present a volume of interest (VOI) based content-based retrieval of four-dimensional (three spatial and one temporal) dynamic PET images. By segmenting the images into VOIs consisting of functionally similar voxels (e.g., a tumor structure), multidimensional visual and functional features were extracted and used as region-based query features. A prototype VOI-based functional image retrieval system (VOI-FIRS) has been designed to demonstrate the proposed multidimensional feature extraction and retrieval. Experimental results show that the proposed system allows for the retrieval of related images that constitute similar visual and functional VOI features, and can find potential applications in medical data management, such as to aid in education, diagnosis, and statistical analysis.

Algorithms↗
PubMed2003

Detection of spectral signatures in multispectral MR images for classification.

This paper presents a new spectral signature detection approach to magnetic resonance (MR) image classification. It is called constrained energy minimization (CEM) method, which is derived from the minimum variance distortionless response in passive sensor array processing. It considers a bank of spectral channels as an array of sensors where each spectral channel represents a sensor and object spectral signature in multispectral MR images are viewed as signals impinging upon the array. The strength of the CEM lies on its ability in detection of spectral signatures of interest without knowing image background. The detected spectral signatures are then used for classification. The CEM makes use of a finite impulse response (FIR) filter to linearly constrain a desired object while minimizing interfering effects caused by other unknown signal sources. Unlike most spatial-based classification techniques, the proposed CEM takes advantage of spectral characteristics to achieve object detection and classification. A series of experiments is conducted and compared with the commonly used c-means method for performance evaluation. The results show that the CEM method is a promising and effective spectral technique for MR image classification.

Algorithms↗
PubMed2003

Evaluation of adaptive/nonadaptive filtering and wavelet transform techniques for noise reduction in EMG mobile acquisition equipment.

The myoelectric signal can be used to control many rehabilitation systems, for instance, prostheses and artificial neuromuscular electrical stimulation toward restoring movement to spinal cord injured subjects. These mobile systems are usually used in different environments and thus are being exposed to different noise levels with characteristics not completely known. In this article, three main techniques for noise reduction were evaluated: wavelet transform (WT), adaptive digital filters, and nonadaptive digital filters. The WT was used to reconstruct the signal with the components without noise information. Adaptive filters were designed using least mean square (LMS) and recursive least square (RLS) algorithms. Finite-impulse response (FIR) and infinite-impulse response (IIR) nonadaptive filters were used for comparison to both the adaptive filters and the signal reconstruction through the WT.

Algorithms↗
PubMed2006

A luminance- and contrast-invariant edge-similarity measure.

A novel similarity measure for edge-detection that is robust to varying luminance and contrast is presented. It incorporates a regularization term and employs directional FIR edge filters with hyperbolic tangent profiles to ensure improved noise performance and edge localization compared to classical methods.

Algorithms↗
PubMed2005

Compact FPGA-based beamformer using oversampled 1-bit A/D converters.

A compact medical ultrasound beamformer architecture that uses oversampled 1-bit analog-to-digital (A/D) converters is presented. Sparse sample processing is used, as the echo signal for the image lines is reconstructed in 512 equidistant focal points along the line through its in-phase and quadrature components. That information is sufficient for presenting a B-mode image and creating a color flow map. The high sampling rate provides the necessary delay resolution for the focusing. The low channel data width (1-bit) makes it possible to construct a compact beamformer logic. The signal reconstruction is done using finite impulse reponse (FIR) filters, applied on selected bit sequences of the delta-sigma modulator output stream. The approach allows for a multichannel beamformer to fit in a single field programmable gate array (FPGA) device. A 32-channel beamformer is estimated to occupy 50% of the available logic resources in a commercially available mid-range FPGA, and to be able to operate at 129 MHz. Simulation of the architecture at 140 MHz provides images with a dynamic range approaching 60 dB for an excitation frequency of 3 MHz.

Analog-Digital Conversion↗
PubMed2005

Quantitative real-time blood flow estimation with intravascular ultrasound in the presence of in-plane flow.

Previously, we showed a source of error in blood flow estimation introduced by in-plane flow using a slow-time finite-impulse response (FIR) filter-bank method measuring blood flow through the image plane of an intravascular ultrasound (IVUS) catheter array. There is a monotonic relationship between flow velocity and the normalized second moment of the slow-time spectrum when flow is orthogonal to the image plane of a side-looking catheter array. However, this relationship changes in the presence of in-plane flow, as slow-time spectra shift and spread with varying in-plane and out-of-plane components. These two effects increase the normalized spectral second moment, resulting in flow overestimates. However, by resampling the received signal with variable time delay from pulse to pulse (i.e., tilting the slow-time signals), the slow-time spectrum shifts back to direct current (DC), and the orthogonal estimation method can be used. We present a method to correct this overestimation and accurately estimate blood flow through the image plane in real time. Initially, the tilt delay needed to shift the slow-time spectrum back to DC at each point within the flow field is calculated. Knowing this tilt delay, a tilted slow-time signal is obtained for the velocity component normal to the image plane, and its spectrum is estimated using a filter-bank. That spectrum then is used to estimate the flow speed using a mapping function closely related to the monotonic relationship between the slow-time spectrum and flow speed observed for orthogonal flow. To accurately estimate flow angles, we modified the filter-bank algorithm, applying slow-time filter coefficients in a tilted arrangement and studying the slow-time spectral energy as a function of tilt. The slow-time spectral estimate is constructed with the tilted output of eight narrow, band-pass filters from a filter-bank. Independent simulations show that, for blood slowing at angles between +/-6 degrees and +/-15 degrees at a speed of 300 mm/s, flow velocity would be overestimated by as much as 38.79% and 249%, respectively, using the direct filter-bank approach. However, this error can be corrected using the modified method presented here, reducing the maximum overestimation error by a factor of 2.69 and 10.88 for those angles, respectively. Although the remaining error is not negligible, the volume flow rate, calculated by integrating the flow velocity over the entire vessel lumen, differs by only 3% or less from the true value over the angular range considered here. This represents an improvement of a factor of 40 over uncompensated estimates at maximum flow angles. Consequently, the modified real-time method can quantitatively measure flow in most IVUS applications in which the catheter's image plane is not precisely orthogonal to the flow direction.

Algorithms↗
PubMed1991

Decreased biocide susceptibility of adherent Legionella pneumophila.

In a study of the in vitro effectiveness of biocides against Legionella pneumophila, some aspects of the cooling tower environment were replicated in the laboratory, paying particular attention to water hardness and pH. Pieces of Douglas fir and polyvinyl chloride were colonized in a recirculating system and the comparative efficacy of two biocides (Bronopol and Kathon) against the sessile and planktonic populations was examined. While the biocides were relatively effective against the planktonic L. pneumophila population over a short period of time (minimum 9-12 h), substantially longer periods of time (maximum greater than 48 h) were required to reduce the number of cultivable bacteria to below detectable levels in the adherent population. The results indicate that failure to monitor the sessile population of L. pneumophila in laboratory studies of biocides may result in the use of incorrect dosages and/or contact times in field trials with apparently reduced in situ efficacy.

Anti-Bacterial Agents↗
PubMed1992

What is known about the structure and function of the Escherichia coli protein FirA?

The firA gene is essential for growth of Escherichia coli growth and lies in the 4-minute region of the genome. firA encodes the FirA protein which contains 341 amino acids and has an apparent molecular mass of 36 kDa. Genetic evidence suggests that FirA plays a role in transcription since certain firA alleles confer temperature sensitivity for growth and RNA synthesis as well as reversing the rifampin resistance of rifampin-resistant rpoB mutants ('fir' effect). FirA co-immunoprecipitates with RNA polymerase holoenzyme, implying a physical association with the transcriptional machinery, possibly with the beta subunit of RNA polymerase. FirA contains a previously undescribed isoleucine/valine-rich six-amino-acid repeat occurring 14 times within the N-terminal and 12 more times within the C-terminal half of the protein. This repeat can be formulated as [HXXXhZ]n with 'H' representing a large non-polar residue (usually isoleucine), 'h' representing a smaller non-polar residue, 'Z' representing either charged/polar or aromatic residues, XXX representing residues typical of beta turns, and 'n' being equal to the repeat number. We refer to this repeat as an isoleucine patch. Proteins encoded by three E. coli acyltransferases also contain this motif which is roughly positioned in each case, within the amino- and carboxyl termini, as in FirA. When the sequences of these proteins are aligned, a region of poor similarity separates the isoleucine patches. The significance of these repeats remains unknown although we speculate that they play an important structural role in the organization and function of FirA (and other proteins containing isoleucine patches), possibly by acting as homo- or hetero-dimerization interfaces.(ABSTRACT TRUNCATED AT 250 WORDS)

Amino Acid Sequence↗
PubMed2006

Contributions of evaporation, isotopic non-steady state transpiration and atmospheric mixing on the delta18O of water vapour in Pacific Northwest coniferous forests.

Changes in the 2H and 18O of atmospheric water vapour provide information for integrating aspects of gas exchange within forest canopies. In this study, we show that diurnal fluctuations in the oxygen isotope ratio (delta 18O) as high as 4% per hundred were observed for water vapour (delta (18)Ovp) above and within an old-growth coniferous forest in the Pacific Northwest region of the United States. Values of delta 18Ovp decreased in the morning, reached a minimum at midday, and recovered to early-morning values in the late afternoon, creating a nearly symmetrical diurnal pattern for two consecutive summer days. A mass balance budget was derived and assessed for the 18O of canopy water vapour over a 2-d period by considering the 18O-isoflux of canopy transpiration, soil evaporation and the air entering the canopy column. The budget was used to address two questions: (1) do delta 18O values of canopy water vapour reflect the biospheric influence, or are such signals swamped by atmospheric mixing? and (2) what mechanisms drive temporal variations of delta 18Ovp? Model calculations show that the entry of air into the canopy column resulted in an isotopically depleted 18O-isoflux in the morning of day 1, causing values of delta 18Ovp, to decrease. An isotopically enriched 18O-isoflux resulting from transpiration then offset this decreased delta 18Ovp later during the day. Contributions of 18O-isoflux from soil evaporation were relatively small on day 1 but were more significant on day 2, despite the small H2(16)O fluxes. From measurements of leaf water volume and sapflux, we determined the turnover time of leaf water in the needles of Douglas-fir trees as approximately 11 h at midday. Such an extended turnover time suggests that transpiration may not have occurred at the commonly assumed isotopic steady state. We tested a non-steady state model for predicting delta 18O of leaf water. Our model calculations show that assuming isotopic steady state increased isoflux of transpiration. The impact of this increase on the modelled delta 18Ovp was clearly detectable, suggesting the importance of considering isotopic non-steady state of transpiration in studies of forest 18O water balance.

Atmosphere↗
PubMed1986

Thigmomorphogenesis: field and laboratory studies of Abies fraseri in response to wind or mechanical perturbation.

Field- and greenhouse-grown Abies fraseri (Pursh) Poir. (Fraser fir) were analyzed for wind- or mechanically-induced flexure changes. These changes included inhibition of stem and needle elongation, reinforcement of branch bases around the stem, and increased radial growth in the direction of the mechanical perturbation (MP). Mature trees exposed to high wind conditions were severely flag-formed. These modified tree crowns had a lower drag than crowns of non-flag formed trees in wind-tunnel tests. In both field-grown and greenhouse-grown A. fraseri, MP induced a decrease in flexibility and increased elasticity of the stems. The increased radial growth of the stems overrode the increase in elasticity, resulting in the overall decrease in flexibility. The increase in radial growth caused by wind or mechanical flexure was due to greater cell divisions of the vascular cambium, resulting in increased numbers of tracheids. The decrease in stem elongation in these trees was due, at least in part, to a decrease in tracheid length. The potential biological and mechanical significance of these induced growth changes in trees are addressed. The data support the thigmomorphogenetic theory, which states that plants respond to wind and other mechanical perturbations in a way that is favorable to the plant for continued survival in windy environments.

Biomechanical Phenomena↗
PubMed1997

Role of zatebradine and propranolol in attenuation of tachycardia produced by dobutamine in pigs.

BACKGROUND: Zatebradine is a new specific bradycardiac agent that selectively slows the depolarization in the pacemaker cells of the sinoatrial node. The purpose of our investigation was to determine whether the tachycardia induced by dobutamine can be attenuated by the administration of zatebradine. The results were compared with those produced by propranolol, which is used in the treatment of sinus tachycardia. METHODS: Twelve pigs were anesthetized with sodium pentobarbital, intubated, and ventilated. After baseline hemodynamic measurements were obtained, dobutamine was administered until the heart rate reached 25% above baseline. Animals were randomized to one of two groups. Group I received zatebradine, 0.5 mg/kg i.v., and Group II received propranolol, 0.5 mg/kg i.v. RESULTS: Dobutamine 10 micrograms.kg-1.min-1 increased the heart rate (FIR) by 25%, and increased mean arterial blood pressure (MAP) left ventricular (LV) dp/dt, and cardiac output (CO) (P < 0.05). Zatebradine decreased the HR to baseline (P < 0.05) without affecting left ventricular systolic pressure (LVSP), left ventricular end diastolic pressure (LVEDP), LV dP/dt, or CO. Stroke volume (SV) increased significantly (P < 0.05). Propranolol also reduced HR to baseline, but decreased LV dP/dt, LVSP, CO, and SV (P < 0.05). CONCLUSION: Zatebradine effectively attenuates the tachycardia caused by dobutamine in anesthetized pigs, without reducing cardiac performance.

Animals↗
PubMed1994

Developing of EEG print and its preliminary technical application.

In this report, we discuss a method called "EEG print" to represent EEG contrast mapping in time and frequency domains simultaneously. A bank of bandpass FIR (Finite Impulse Response) digital filters is used to obtain EEG prints. EEG prints were taken from four areas (F3, F4, O1 and O2) of EEG when healthy subjects were at rest with their eyes closed. The pattern of the prints was classified into four types: alpha type, beta type, alpha + beta type and complex type. It was found that EEG prints may vary from person-to-person but they usually do not vary much between the four areas for a given person. The method is further modified to obtain "differential EEG prints" to investigate whether meaningful higher frequency EEG components exist. Differentiation of EEG resulted in marked intensification of the fast waves, using 0.14 Hz as the critical point. In differential EEG print with higher order differentiation, amplification in the high frequency components increase their frequency. As a result, it is possible to observe variations in the high frequency components, which are otherwise not detectable in the usual EEG print. EEG print can be used for representing the function of the brain. Using the method for classification of EEG print patterns, described in this paper, we can clarify not only the characteristics of the normal brain but also the pathophysiology of mentally-ill patients.

Alpha Rhythm↗
PubMed2000

Changes in the distribution of synaptic potentials from bulbospinal neurones following axotomy in cat thoracic spinal cord.

1. Plasticity in functional connections of expiratory bulbospinal neurones was investigated by measurement of terminal potentials (TPs) and focal synaptic potentials (FSPs), recorded with spike-triggered averaging in the thoracic spinal cord of anaesthetized, paralysed cats. These measurements were made in normal cats and in those which had previously been subjected to spinal cord lesions that transected the axons of the bulbospinal neurones in the segment below that under investigation, either about 2 weeks or about 16 weeks previously. 2. In both groups of operated animals bulbospinal neurones with firing properties and conduction velocities similar to normal were present. The extracellular recordings that were averaged to reveal TPs and FSPs were made on two standard grids, each consisting of eight sites spaced 0.25 mm apart on two electrode tracks. One grid was positioned at a rostral and one at a caudal location within one segment (T7-T9). 3. Tn the normal animals TPs and FSPs were larger and/or more common at rostral sites than at caudal sites, by a factor of about 1.7. In both 2 week and 16 week animals, TPs and FSPs were observed, both showing normal tine courses and latencies. At rostral sites in 2 week and 16 week animals the amplitudes and/or the frequency of occurrence of TPs and FSPs were similar to normal, as was the case fir caudal sites in the 2 week animals. However, at caudal sites in the 16 week animals the FSPs were mole common and/or significantly larger than normal, with the increase particularly marked on the lateral track, being equivalent to a factor of about 2. A corresponding increase in the amplitude and/or frequency of occurrence of TPs at caudal lateral sites was also seen, but was not significant. 4. The results are interpreted as evidence for short-range sprouting of the bulbospinal axons and the formation by them of new connections in the caudal parts of the segments concerned.

Animals↗
PubMed2006

Conserving old-growth forest diversity in disturbance-prone landscapes.

A decade after its creation, the Northwest Forest Plan is contributing to the conservation of old-growth forests on federal land. However the success and outlook for the plan are questionable in the dry provinces, where losses of old growth to wildfire have been relatively high and risks of further loss remain. We summarize the state of knowledge of old-growth forests in the plan area, identify challenges to conserve them, and suggest some conservation approaches that might better meet the goals of the plan. Historically, old-growth forests in these provinces ranged from open, patchy stands, maintained by frequent low-severity fire, to a mosaic of dense and open stands maintained by mixed-severity fires. Old-growth structure and composition were spatially heterogeneous, varied strongly with topography and elevation, and were shaped by a complex disturbance regime of fire, insects, and disease. With fire suppression and cutting of large pines (Pinus spp.) and Douglas-firs (Pseudotsuga menziesii [Mirbel] Franco), old-growth diversity has declined and dense understories have developed across large areas. Challenges to conserving these forests include a lack of definitions needed for planning of fire-dependent old-growth stands and landscapes, and conflicts in conservation goals that can be resolved only at the landscape level. Fire suppression has increased the area of the dense, older forest favored by Northern Spotted Owls (Strix occidentalis caurina) but increased the probability of high-severity fire. The plan allows for fuel reduction in late-successional reserves; fuel treatments, however apparently have not happened at a high enough rate or been applied in a landscape-level approach. Landscape-level strategies are needed that prioritize fuel treatments by vegetation zones, develop shaded fuel breaks in strategic positions, and thin and apply prescribed fire to reduce ladder fuels around remaining old trees. Evaluations of the current and alternative strategies are needed to determine whether the current reserve-matrix approach is the best strategy to meet plan goals in these dynamic landscapes.

Biodiversity↗
PubMed2006

Diversity of the small subunit ribosomal RNA gene of the arbuscular mycorrhizal fungi colonizing Clintonia borealis from a mixed-wood boreal forest.

Arbuscular mycorrhizal fungi (AMF) communities in Clintonia borealis roots from a boreal mixed forests in northwestern Québec were investigated. Roots were sampled from 100 m2 plots whose overstory was dominated by either trembling aspen (Populus tremuloides Michx.), white birch (Betula papyrifera Marsh.), or mixed white spruce (Picea glauca (Moench) Voss) and balsam fir (Abies balsamea (L.) Mill.). Part of the 18S ribosomal gene of the AMF was amplified and the resulting PCR products were cloned. Restriction analysis of the 576 resulting clones yielded 92 different restriction patterns which were then sequenced. Fifty-two sequences closely matched other Glomus sequences from Genbank. Phylogenetic analysis revealed 10 different AMF sequence types, most of which clustered with other uncultured AM sequences from plant roots from various field sites. Compared with other AMF communities from comparable studies, richness and diversity were higher than observed in an arable field, but lower than seen in a tropical forest and a temperate wetland. The AMF communities from Clintonia roots under the different canopy types did not differ significantly and the dominant sequence type, which clustered with AM sequences from a variety of environments and hosts at distant geographical locations, represented 66.9% of all the clones analyzed.

Biodiversity↗