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PubMed1998

Motion detection and directional tuning.

A random dot pattern was presented which made two jumps in various directions with a variable delay between them. The jumps occurred at the frame transitions of a 3-frame apparent motion sequence. The variation in detectability with the directional difference and the temporal separation of the jumps allows us to make inferences about directional tuning and the temporal response of the motion detection mechanism. The detectability of a pair of jumps was highest when the delay between the jumps was short and the difference in the jump directions was small. In all cases the data were well fitted with a vector version of the speed energy model earlier proposed by Simpson. The model supposes that the two input vectors are temporally filtered, squared and integrated. Using the model, the autocorrelation function of the motion system's temporal impulse response can be found. This function shows the filter to be lowpass. According to the model, the shape of the threshold or d' locus as a function of the difference in the directions of the two jumps does not show the tuning of a motion mechanism. A tuned mechanism will respond well to a jump in its preferred direction, but less well to any other jump. Instead we show that the apparent tuning evident in the threshold and d' loci is due to the way in which the two jump vectors, each fully recovered, are combined in a vector sum.

Humans↗

PubMed1992

Continuous dermoepidermal junction IgM detected by direct immunofluorescence: a report of nine cases.

BACKGROUND: Although a linear IgM dermatosis of pregnancy has been reported, other authors have not found evidence for a distinct linear IgM dermatosis. OBJECTIVE: We set out to determine whether or not continuous dermoepidermal junction IgM deposition detected by direct immunofluorescence was indicative of a specific disease. METHODS: We collected nine cases during a 9-year period in which biopsy specimens for direct immunofluorescence revealed continuous linear IgM at the dermoepidermal junction in the absence of other immunoglobulins. In all of these cases the medical record was available for review. RESULTS: Clinical correlation revealed that these patients had a heterogeneous group of diseases with urticaria and leukocytoclastic vasculitis being most common. No diagnostic specificity could be ascribed to the linear IgM pattern, although six of our nine cases could be considered manifestations of a hypersensitivity response (e.g., urticaria, leukocytoclastic vasculitis, pigmented purpuric dermatosis, or hypersensitivity dermatitis). CONCLUSION: Pathologists and dermatologists should be aware that linear IgM can be seen in a variety of clinical settings. The etiopathogenic significance of this finding, if any, remains to be determined. At present, the finding must be viewed as nonspecific.

Adult↗

PubMed2003

Separation of haloacetic acids in water by capillary zone electrophoresis with direct UV detection and contactless conductivity detection.

The separation of haloacetic acids (HAAs) in water by capillary zone electrophoresis with direct UV and contactless conductivity detection was investigated using phosphate, citrate, and borate buffers, and the experimental data were compared to simulation data predicted by a computational program known as PeakMaster. Good agreement between the experimental data and simulation data predicted by PeakMaster was found. Using the phosphate buffer or the citrate buffer and electrokinetic injection it was possible to quantitate HAAs at 0.1 ppm levels in water.

Acetates↗

PubMed2002

Enhanced selectivity and sensitivity for inorganic anions using an ion-pairing reagent and sample stacking in capillary zone electrophoresis with direct UV detection.

In this paper, the use of an ion-pairing reagent to improve the separation selectivity of inorganic anions in CZE was demonstrated by the addition of tetramethylammonium hydroxide (TMAOH) to the electrolyte. The separation of inorganic anions (Cl(-), I(-), Br(-), NO(2)(-), NO(3)(-) and SCN(-)) was performed using co-electroosmotic flow (EOF) with direct UV detection at 185 nm. The parameters affecting the mobility of the tested anions and the EOF such as the electrolyte pH and concentration of TMAOH in the electrolyte were examined to optimise the separation conditions. In addition, sample-stacking techniques were investigated to improve detection sensitivity. Detection sensitivities were improved 5-13-fold using electrokinetic sample stacking. The detection limits ranged from 1-3 micro mol L(-1). Finally, the proposed method was used for the separation of anions in groundwaters.

Journal Article↗

PubMed1986

A single-step silver enhancement method permitting rapid diagnosis of cytomegalovirus infection in formalin-fixed, paraffin-embedded tissue sections by in situ hybridization and immunoperoxidase detection.

A single-step silver enhancement method was developed which intensifies the polymerized nickel-complexed diaminobenzidine (Ni-DAB) reaction product of peroxidase. With such enhancement, an in situ hybridization procedure can be performed in less than 8 hr by using a 2-hr hybridization incubation and direct detection. Cytomegalovirus (CMV)-infected lung sections were hybridized in situ for 2 hr with a biotinylated CMV genomic-length probe. The probe was detected directly with avidin-biotinylated peroxidase using Ni-DAB as the substrate, and the reaction product was enhanced with silver. Silver was deposited only on the Ni-DAB and not on normally argyrophilic substances. Indirect detection of the probe using a sandwich technique before silver enhancement proved more sensitive, but the length of the procedure was increased without substantially changing the result (infection vs. no infection). Sensitivity was also improved by omitting the dehydration step before applying the probe, and by increasing the temperature and duration of denaturation. In a blinded study of 21 open-lung biopsies, 13 of 13 culture-negative specimens were negative by hybridization, and 7 of 8 culture-positive specimens were positive by hybridization. Modified short hybridization with a biotinylated probe and silver-enhanced direct detection therefore provides a rapid but sensitive method for diagnosis of viral infection.

3,3'-Diaminobenzidine↗

PubMed2000

Analysis of highly saline samples by capillary zone electrophoresis: enhanced direct UV detection of inorganic anions using on-capillary preconcentration and clean-up techniques.

The ability to analyze samples with disparate levels of analyte and matrix ions is among the important benefits defining the practical utility of modern capillary electrophoresis. To compensate for the sensitivity limitations regarding trace-level inorganic anions, a number of on-line approaches that should offer an improved S/N ratio in direct UV detection were examined. The novel use of reversed pre-electrophoresis (at the applied voltage opposite to the separation voltage) made it possible to efficiently remove the most part of high chloride levels from the sample and hence to lower the background signal and to inject increased quantities of fast analyte anions. Specifically, by taking these advantages the sensitivity response of iodide was improved by a factor of 5 over normal CE mode. Using isotachophoretic sample stacking, a two-fold increase in detectability was obtained for moderately mobile anions, nitrate and nitrite, that corresponds to the minimum detectable concentrations close to their natural occurrences in seawater. Furthermore, field-amplified sample injection at increased electrolyte-to-sample matrix concentration ratios enabled the maximum S/N enhancement, with detection limits at the level of 10(-6) M and lower in the presence of > or = 5 x 10(4)-fold molar excess of chloride.

Electrophoresis, Capillary↗

PubMed2001

Evaluation of phosphodiesterase I-based protocols for the detection of multiply damaged sites in DNA: the detection of abasic, oxidative and alkylative tandem damage in DNA oligonucleotides.

It has been proposed that DNA multiply damaged sites (MDS), where more than one moiety in a local region ( approximately 1 helical turn, 10 bp) of the DNA is damaged, are lesions of enhanced biological significance. However, other than indirect measures, there are few analytical techniques that allow direct detection of MDS in DNA. In the present study we demonstrate the potential of protocols incorporating an exonucleolytic snake venom phosphodiesterase (SVPD) digestion stage to permit the direct detection of certain tandem damage, in which two lesions are immediately adjacent to each other on the same DNA strand. A series of prepared oligonucleotides containing either single or pairs of tetrahydrofuran moieties (F), thymine glycol lesions (T(g)) or methylphosphotriester adducts (Me-PTE) were digested with SVPD and the digests examined by either (32)P-end-labelling or electrospray mass spectrometry. The unambiguous observation of SVPD-resistant 'trimer' species in the digests of oligonucleotides containing adjacent F, T(g) and Me-PTE demonstrates that the SVPD digestion strategy is capable of allowing direct detection of certain tandem damage. Furthermore, in studies to determine the specificity of SVPD in dealing with pairs of lesions on the same strand, it was found mandatory to have the two lesions immediately adjacent to each other in order to generate the trimer species; pairs of lesions separated by as few as one or two normal nucleotides behave principally as single lesions towards SVPD.

Alkylation↗

PubMed1998

Gaze discrimination is unimpaired in schizophrenia.

Interpersonal communication is largely dependent on interpretation of facial expression and emotion. Difficulties in face processing, and more specifically in gaze discrimination, have been described in schizophrenic patients. According to Baron-Cohen (Mindblindness. M.I.T. Press, Cambridge, MA, 1995), gaze discrimination relies on the functioning of a specific cognitive module, the Eye Direction Detector (EDD). It has been proposed [Rosse et al. (1994) Gaze discrimination in patients with schizophrenia: preliminary report. American Journal of Psychiatry 151, 919-921] that an impairment in gaze discrimination is present in schizophrenia, and plays a fundamental role in inducing the paranoid symptoms reported by many patients. However, in the previous studies, gaze direction detection and interpretation of gaze have never been completely dissociated. The present experiment attempts to test the schizophrenics' skill in a simple gaze direction detection task. A series of photographic portraits of models looking at different directions have been presented to 22 schizophrenic patients and 36 control subjects. For each portrait subjects were asked to determine whether gaze was directed to the right or to the left by pressing a keyboard key. A forced choice paradigm was used. No differences were reported between schizophrenic patients and control subjects. That is, in the present paradigm, schizophrenic patients did not show any specific impairment in detecting the direction of gaze of the portraits. The results are discussed according to the notion that a dissociation is present in schizophrenia between implicit and explicit processes. The present case illustrates how the more automatic elementary functions, such as the detection of gaze direction, may be spared in schizophrenic patients, whereas explicit cognitive functions are likely more affected.

Adult↗

PubMed2004

Prenatal diagnosis of autosomal dominant hereditary spastic paraplegia (SPG4) using direct mutation detection.

OBJECTIVE: To present a report on prenatal diagnosis using direct SPG4 gene analysis in a family with autosomal dominant hereditary spastic paraplegia (AD-HSP). METHODS: Genetic linkage and haplotype analysis were previously carried out with chromosome 2p markers. DNA was obtained from affected individuals, the affected father, the mother, and fetal DNA from an ongoing pregnancy by chorionic villus sampling (CVS) in the first trimester. The spastin gene (SPG4) was completely sequenced. RESULTS: A novel 832insGdelAA frameshift mutation, predicted to cause loss of functional protein, was identified in the affected father and in the fetal DNA. CONCLUSIONS: This is the first report on direct prenatal diagnosis of chromosome 2p-linked AD-HSP (SPG4). In addition, we report a novel SPG4-combined small insertion/deletion mutation in exon 5, which may be the first SPG4 mutational hot spot.

Adult↗

PubMed1993

[Genital chlamydia infection in andrologic patients. Direct antigen detection and serologic screening].

Authors investigated the frequency of genital chlamydial infection. 83 couples--complaining with infertility--were examined. Twenty patients were chlamydia positive by direct IF antigen detection. All chlamydia positive patients have elevated IgG antibody levels in sera. In 33 cases (18.1%) the antibody titers were significantly high above 1:128, in 58 cases (34.9%) antibody levels were slightly elevated between 1:16-1:64. Authors are analysing the questions of the humoral immune reactions and the results of the medical treatment.

Adult↗

PubMed1992

Evaluation of a new monoclonal antibody combination reagent for direct fluorescence detection of Giardia cysts and Cryptosporidium oocysts in human fecal specimens.

Giardia lamblia and Cryptosporidium parvum can cause severe symptoms in humans, particularly in the immunologically compromised. Monoclonal antibody reagents offer increased sensitivity and an excellent alternative to conventional staining methods. These reagents are helpful when screening large numbers of patients or those with minimal symptoms. Problems of false-positive and false-negative results with routine staining methods for stool parasites can be eliminated with monoclonal antibody reagents. Known positive formalinized specimens [Giardia sp. (n = 60), Cryptosporidium sp. (n = 55), and mixed Giardia-Cryptosporidium spp. (n = 10)] and negative formalinized specimens (n = 105), of which 46 contained other yeast or human cells or protozoa), were tested by the MERIFLUOR Cryptosporidium-Giardia direct immunofluorescence detection procedure. The MERIFLUOR reagent exhibited +/- to 4+ (majority, 2+ to 3+) on all Giardia cysts and 2+ to 4+ (majority, 3+ to 4+) on all Cryptosporidium oocysts. The cysts were generally oval (11 to 15 microns), while the oocysts were round (4 to 6 microns); both showed apple-green fluorescence against a background free of nonspecific fluorescence. All specimens positive for Giardia sp. and/or Cryptosporidium sp. showed fluorescence, and all specimens negative for the two organisms showed no fluorescence. There were eight specimens previously negative by the ova and parasite examination which were positive by the direct fluorescence method; four contained Giardia sp., and four contained Cryptosporidium sp. These positive results were confirmed after the examination of additional trichrome and modified acid-fast smears. The MERIFLUOR reagent was very easy to use, and even with a lower fluorescence intensity for Giardia sp. cysts, no false-negative or false-positive results among the specimens tested for either organism were found.

Animals↗

PubMed1998

A comparison of PCR with virus isolation and direct antigen detection for diagnosis and typing of genital herpes.

Patients attending the genitourinary medicine clinic at Watford General Hospital, UK, were examined for clinical signs of genital herpes infection. Genital swabs were taken from 194 patients (126 female, 68 male) who presented with genital ulceration or symptoms which were suggestive of genital herpes infection. Swabs from these patients were tested by three methods: (i) Detection of herpes simplex virus (HSV) antigen by direct HSV enzyme immunoassay (EIA), (ii) HSV isolation in Vero cell culture and (iii) HSV polymerase chain reaction (PCR). HSV was detected in 76 patients (39%) by EIA, in 93 (48%) by isolation in cell culture, and in 115 (59%) by PCR. Isolation by cell culture has been considered as the "gold standard" for the detection of HSV in genital lesions, but in this study HSV PCR was significantly more sensitive. Comparison of the three methods was as follows: Cell culture vs. PCR: Sensitivity 93/115 (80.9%), Specificity 79/79 (100%). HSV EIA vs. PCR: Sensitivity 75/115 (65.2%), Specificity 78/79 (98.7%). HSV EIA vs. Cell culture: Sensitivity 75/93 (80.7%), Specificity 100/101 (99%). EIA was less effective in detecting HSV among recurrent than among first episode infections, in comparison to culture or HSV PCR. This is the first comparison of HSV PCR with two other routine diagnostic methods for confirming genital herpes infection in a symptomatic population. The infecting HSV type was identified by restriction digestion of 108 HSV amplicons: HSV-1:37/108 (34%), HSV-2:71/108 (66%). In this population HSV-1 causes a significant proportion of genital herpes cases, and HSV-1 genital infection was detected in significantly more first episode infections (40.3%) than among recurrent infections (22.2%).

Animals↗

PubMed2002

Computer-aided detection in direct digital full-field mammography: initial results.

For the first time, full-field digital mammography (FFDM) allows computer-aided detection (CAD) analysis of directly acquired digital image data. The purpose of this study was to evaluate a CAD system in patients with histologically correlated breast cancer depicted with FFDM. Sixty-three cases of histologically proven breast cancer detected with FFDM (Senographe 2000D, GE Medical Systems, Buc, France) were analyzed using a CAD system (Image Checker V2.3, R2 Technology, Los Altos, Calif.). Fourteen of these malignancies were characterized as microcalcifications, 37 as masses, and 12 as both. The mammographic findings were categorized as BI-RADS 3 (n=5), BI-RADS 4 (n=17) and BI-RADS 5 (n=40). The sensitivity for malignant lesions and the rate of false-positive marks per image were calculated. The sensitivity and its 95% confidence interval (CI) were estimated. The sensitivity of the CAD R2 system in breast cancer seen on FFDM was 89% for microcalcifications [CI(95%)=(70%; 98%)] and 81% for masses [CI(95%)=(67%; 91%)]. As expected, the detection rate was higher in lesions categorized as BI-RADS 5 (37 of 40) compared with lesions categorized as BI-RADS 4 (11 of 17). In the group categorized as BI-RADS 3 the detection rate was 4 of 5 lesions; however, this group was very small. The rate of false-positive marks was 0.35 microcalcification marks/image and 0.26 mass marks/image. The overall rate of false-positive marks was 0.61 per image. CAD based on FFDM provides an optimized work flow. Results are equivalent to the results reported for CAD analysis of secondarily digitized image data. Sensitivity for microcalcifications is acceptable and for masses is low. The number of false-positive marks per image should be reduced.

Breast Neoplasms↗

PubMed2003

Possibilities for the detection of microbial life on extrasolar planets.

We consider possibilities for the remote detection of microbial life on extrasolar planets. The Darwin/Terrestrial Planet Finder (TPF) telescope concepts for observations of terrestrial planets focus on indirect searches for life through the detection of atmospheric gases related to life processes. Direct detection of extraterrestrial life may also be possible through well-designed searches for microbial life forms. Satellites in Earth orbit routinely monitor colonies of terrestrial algae in oceans and lakes by analysis of reflected ocean light in the visible region of the spectrum. These remote sensing techniques suggest strategies for extrasolar searches for signatures of chlorophylls and related photosynthetic compounds associated with life. However, identification of such life-related compounds on extrasolar planets would require observations through strong, interfering absorptions and scattering radiances from the remote atmospheres and landmasses. Techniques for removal of interfering radiances have been extensively developed for remote sensing from Earth orbit. Comparable techniques would have to be developed for extrasolar planet observations also, but doing so would be challenging for a remote planet. Darwin/TPF coronagraph concepts operating in the visible seem to be best suited for searches for extrasolar microbial life forms with instruments that can be projected for the 2010-2020 decades, although resolution and signal-to-noise ratio constraints severely limit detection possibilities on terrestrial-type planets. The generation of telescopes with large apertures and extremely high spatial resolutions that will follow Darwin/TPF could offer striking possibilities for the direct detection of extrasolar microbial life.

Biological Evolution↗

PubMed2000

Separation and direct UV detection of lanthanides complexed with cupferron by capillary electrophoresis.

Separation and detection of lanthanides by capillary zone electrophoresis in the presence of cupferron (N-nitroso-N-phenylhydroxylamine) as UV absorbing complexing agent were investigated. The resolution of partially complexed positively charged cupferron complexes is improved by using a buffer ligand competing with cupferron for metal ions. When hydroxyisobutyric acid (HIBA) is used as buffer and competing ligand, it provides complete separation of all 14 lanthanides with good peak shapes. An on-column separation of 14 lanthanides was achieved in only 7 min using 0.1 mmol/l cupferron, 15 mmol/1 HIBA at pH 4.9. The separation efficiencies for the optimum separation condition are between 77,000 and 208,000 theoretical plates. Determination of lanthanide complexes was performed by direct UV detection at 210 nm. Detection limits (signal-to-noise ratio=3) are ca. 0.24-0.47 microg/ml for lanthanides. Under optimum conditions, the complete separation of thorium and uranium from mixed lanthanides was achieved.

Metals, Rare Earth↗

PubMed1998

A comparison of strategies for the detection and recovery of Vibrio vulnificus from marine samples of the western Mediterranean coast.

We have compared the effectiveness of culture-based methods and a DNA-based method for the detection, of Vibrio vulnificus from a seawater and three types of shellfish collected from the costal waters of Valencia, Spain. For culture-based method, we used two selective media, thiosulphate-citrate-salts-sucrose (TCBS), and cellobiose-polymyxin B-colistin (CPC) agars with and without previous enrichment in alkaline-saline-peptone-water (APWS). Presumptive colonies were confirmed as V. vulnificus by the polymerase chain reaction (PCR) using previously described 23S rRNA V. vulficus-specific sequences as primers (Dvu 9V and Dvu 45R). Direct detection was accomplished by a nested-PCR procedure developed for environmental samples, with the above mentioned primers for the second amplification. Of 32 seawater samples, only one yielded positive results by direct detection by PCR, whereas five were positive by culture methods. Of the 32 bivalve samples, two were positive by PCR and five by culture methods. From a total of 675 presumptive colonies selected on the two media, only 48 (20 from seawater and 28 from bivalves) were confirmed as V. vulnificus by PCR. Forty-six V. vulnificus isolates were obtained after enrichment and only two after direct inoculation of CPC. Except for one sampling, positive results by direct detection did not correlate with confirmed strains obtained from culture media. API 20E profiles were recorded for all isolates previously identified as V. vulnificus, revealing that around 20% of the strains were sucrose-positive. For our samples, the best strategy consisted in the combination of culture based methods (3 h enrichment in APWs at 40 degrees C followed by CPC at the same temperature) and DNA-based procedures (specific PCR amplification of the presumptive colonies with primers Dvu 9V and Dvu 45 R), which allowed the detection and accurate identification of V. vulnificus in less than 48h. This is the first report on the detection of cells of V. vulnificus naturally present in seawater and edible shellfish in the Spanish Mediterranean coast.

Animals↗

PubMed2002

Anion-exchange chromatography of metal cyanide complexes with gradient separation and direct UV detection.

In the regulatory analysis of water samples, cyanide content is usually expressed in various forms as free cyanide, total cyanide, weak-acid dissociable cyanide, available cyanide, and cyanide amenable to chlorination. Concentration of individual metal cyanide complex, not furnished in any of these methods, is useful in meaningful assessment of toxicity due to cyanide. In the present work, two macroporous anion-exchange columns, having high and intermediate hydrophobicity, were evaluated to achieve separation of cyano complexes of silver, iron, gold, copper, nickel, and cobalt. On the QS-Al SC column, of high hydrophobicity, the monovalent cyano complexes of silver and gold eluted last while the multivalent cyano complexes, e.g. iron and copper, eluted early. It is suggested that the retention order on this column is due to relative hydrophobicity of the metal cyanide complex, and its affect on ion exchange. In contrast, on the QS-A2 SC column of intermediate hydrophobicity, with the exception of cyano complex with Fe, the separation of the cyano complexes of five other metals closely followed an anion-exchange mechanism. Under gradient conditions, the six metal cyanide complexes were well resolved on the QS-A2 SC column and the method with direct UV detection at 215 nm was accurate (spike recovery of 99.8-118.8%) and precise (RSD of 1.0-2.6%).

Anion Exchange Resins↗

PubMed1980

Direct spectrophotometric detection of ascorbate free radical formed by dopamine beta-monooxygenase and by ascorbate oxidase.

A direct spectrophotometric method was used for detection of the ascorbate free radical formed during enzyme catalysis with dopamine beta-monooxygenase and with ascorbate oxidase. The optical absorption spectra in the range of 330-390 nm for the free radical formed by either of these enzymes were quite similar to the previously reported spectrum from pulse radiolysis experiments. The second order rate constant for dismutation of the radical generated by dopamine beta-monooxygenase at 23 degrees C was estimated from the levels of radical in the steady state, and the values of 2.4 .10(-6) M-1 . s-1 at pH 7.0 and 9.7 . 10(-6) M-1 . s-1 at pH 6.0 were in close agreement with reported values from experiments in which the radical had been generated with ascorbate oxidase or with pulse radiolysis. Moreover, the steady state radical levels at different levels of dopamine beta-monooxygenase or its substrate tyramine were also those predicted by a mechanism of nonenzymic dismutation of the radical. We conclude, in agreement with our earlier report with the cytochrome c scavenger method, that the radical is not an enzyme-bound intermediate, but a product of dopamine beta-monooxygenase catalysis.

Adrenal Glands↗