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Some evidence of incipient speciation in Drosophila kikkawai.

Altogether 11 geographic populations of Drosophila kikkawai were analysed from the viewpoint of karyotypic variation, inversion polymorphism and sexual isolation. The results revealed that of all the populations, the New Guinea population was the most genetically diverged, characterized by its distinct karyotype, possession of a fixed inversion, and its females exhibiting sexual isolation at the level of preferential mating. Based on these findings it was inferred that incipient speciation has proceeded in D. kikkawai and its New Guinea population is on its way to speciation.

Animals↗

Arthropods on islands: colonization, speciation, and conservation.

Islands have traditionally been considered to be any relatively small body of land completely surrounded by water. However, their primary biological characteristic, an extended period of isolation from a source of colonists, is common also to many situations on continents. Accordingly, theories and predictions developed for true islands have been applied to a huge array of systems, from rock pools, to single tree species in forests, to oceanic islands. Here, we examine the literature on islands in the broadest sense (i.e., whether surrounded by water or any other uninhabitable matrix) as it pertains to terrestrial arthropods. We categorize islands according to the features they share. The primary distinction between different island systems is "darwinian" islands (formed de novo) and "fragment" islands. In the former, the islands have never been in contact with the source of colonists and have abundant "empty" ecological niche space. On these islands, species numbers will initially increase through immigration, the rate depending on the degree of isolation. If isolation persists, over time species formation will result in "neo-endemics." When isolation is extreme, the ecological space will gradually be filled through speciation (rather than immigration) and adaptive radiation of neo-endemics. Fragment islands are fundamentally different. In these islands, the ecological space will initially be filled as a consequence of connection to the source of colonists prior to insularization. Species numbers will decrease following fragmentation through the process of relaxation. If these islands become more isolated, species will eventually arise through relictualization with the formation of "paleo-endemics." Given sufficient time, this process can result in generic level endemism on ancient fragment islands, a phenomenon well illustrated in Madagascar and New Zealand. Recognizing the distinction between the different kinds of islands is fundamental for understanding emerging patterns on each, in particular speciation, biodiversity (e.g., neo-endemics versus paleo-endemics), and conservation (e.g., naiveté in interactions with alien species).

Animals↗

Explosive chromosome evolution and speciation in the gerbil genus Taterillus (Rodentia, Gerbillinae): a case of two new cryptic species.

The five morphologically sibling gerbil species of the genus Taterillus in West Africa were first identified from karyotypes. These species possess an XX/XY(1)Y(2) sex-chromosome system and are characterized by significant karyotypic reorganization, thus making them a suitable model for studying the role of chromosomal rearrangements in the speciation process. We present here a description of two new cytotypes, Taterillus sp. 1 and Taterillus sp. 2, from the Lake Chad area, the former having a 2n = 22/23, NFa = 40, and the latter 2n = 24/25, NFa = 44. Comparison of their G- and C- banding patterns with those of T. pygargus (2n = 22/23, NFa = 38/40), examined in an earlier paper, revealed that all three species differ from each other by 7 to 11 chromosomal rearrangements, comprising tandem translocations, pericentric inversions, and Robertsonian metacentrics displaying monobrachial homology. Meiotic configurations formed in potential hybrids among any of these three forms would consist of complex rings and chains, alone or in combination, resulting, as expected, in a significant disruption of gametogenesis. These results provide support for assigning Taterillus sp. 1 and Taterillus sp. 2 to two different biological species, which, as demonstrated by our preliminary molecular studies, would have emerged recently. Possible factors responsible for the rapid karyotypic evolution and speciation in this West African gerbil complex are discussed.

Animals↗

Automated immunofluorescent speciation of oral bacteria using flow cytometry.

Mixtures containing two bacterial species were analyzed using flow cytometric techniques. Light scattering characteristics of Streptococcus mutans and Actinomyces viscosus show unique profiles for pure cultures. However, the light scatter analysis of a mixture containing these two species demonstrates overlapping near the origin. Thus, light scatter analysis was not sufficient to speciate bacteria with different morphologies. Labeling of samples with species-specific immunofluorescent antibodies permitted speciation of mixtures. As the percentage of the bacterium to which the antibody is directed increased in a two-component mixture, fluorescent flow cytometric analysis showed a corresponding increase in the percentage of cells displaying fluorescent labeling. These methods could permit the rapid identification of bacteria from oral sites without culturing.

Actinomyces↗

Reticulate sympatric speciation in Cameroonian crater lake cichlids.

BACKGROUND: Traditionally the rapid origin of megadiverse species flocks of extremely closely related species is explained by the combinatory action of three factors: Disruptive natural selection, disruptive sexual selection and partial isolation by distance. However, recent empirical data and theoretical advances suggest that the diversity of complex species assemblages is based at least partially on the hybridization of numerous ancestral allopatric lineages that formed hybrids upon invasion of new environments. That reticulate speciation within species flocks may occur under sympatric conditions after the primary formation of species has been proposed but not been tested critically. RESULTS: We reconstructed the phylogeny of a complex cichlid species flock confined to the tiny Cameroonian crater lake Barombi Mbo using both mitochondrial and nuclear (AFLP) data. The nuclear phylogeny confirms previous findings which suggested the monophyly and sympatric origin of the flock. However, discordant intra-flock phylogenies reconstructed from mitochondrial and nuclear data suggest strongly that secondary hybridization among lineages that primarily diverged under sympatric conditions had occurred. Using canonical phylogenetic ordination and tree-based tests we infer that hybridization of two ancient lineages resulted in the formation of a new and ecologically highly distinct species, Pungu maclareni. CONCLUSIONS: Our findings show that sympatric hybrid speciation is able to contribute significantly to the evolution of complex species assemblages even without the prior formation of hybrids derived from allopatrically differentiated lineages.

Journal Article↗

Biogenesis and speciation of nascent apoA-I-containing particles in various cell lines.

It is generally thought that the large heterogeneity of human HDL confers antiatherogenic properties; however, the mechanisms governing HDL biogenesis and speciation are complex and poorly understood. Here, we show that incubation of exogenous apolipoprotein A-I (apoA-I) with fibroblasts, CaCo-2, or CHO-overexpressing ABCA1 cells generates only alpha-nascent apolipoprotein A-I-containing particles (alpha-LpA-I) with diameters of 8-20 nm, whereas human umbilical vein endothelial cells and ABCA1 mutant (Q597R) cells were unable to form such particles. Interestingly, incubation of exogenous apoA-I with either HepG2 or macrophages generates both alpha-LpA-I and prebeta1-LpA-I. Furthermore, glyburide inhibits almost completely the formation of alpha-LpA-I but not prebeta1-LpA-I. Similarly, endogenously secreted HepG2 apoA-I was found to be associated with both prebeta1-LpA-I and alpha-LpA-I; by contrast, CaCo-2 cells secreted only alpha-LpA-I. To determine whether alpha-LpA-I generated by fibroblasts is a good substrate for LCAT, isolated alpha-LpA-I as well as reconstituted HDL [r(HDL)] was reacted with LCAT. Although both particles had similar V(max) (8.4 vs. 8.2 nmol cholesteryl ester/h/microg LCAT, respectively), the K(m) value was increased 2-fold for alpha-LpA-I compared with r(HDL) (1.2 vs. 0.7 microM apoA-I). These results demonstrate that 1) ABCA1 is required for the formation of alpha-LpA-I but not prebeta1-LpA-I; and 2) alpha-LpA-I interacts efficiently with LCAT. Thus, our study provides direct evidence for a new link between specific cell lines and the speciation of nascent HDL that occurs by both ABCA1-dependent and -independent pathways.

ATP Binding Cassette Transporter 1↗

Sex gene pool evolution and speciation: a new paradigm.

In this paper, we review the literature on the growing body of data demonstrating the rapid evolution of sex and reproduction related (SRR) genes and show how a paradigm shift to the study of SRR genes can provide new approaches to solving some of the old problems in evolutionary biology. The argument is based on (1) the growing scope and importance of sexual selection in evolution, (2) the growing number of case studies showing rapid evolution of sexual traits in a wide variety of taxa, (3) the faster rate of DNA sequence divergence in genes affecting sexual function and fertility, (4) the evidence for the involvement of novel traits/genes in sexual functions, and (5) a proposed sex/non-sex dichotomy of the gene pool affecting viability versus fertility. It is argued that the adoption of the sex/non-sex dichotomy of genes/traits can provide new perspectives on such problems as species concepts, modes (allopatric/sympatric) of speciation, Haldane's rule, reinforcement, and the founder effect. It is proposed that the evolutionary study of genes affecting viability versus fertility is the key to understanding the genetic basis of speciation.

Animals↗

Quantification and speciation of mercury and selenium in fish samples of high consumption in Spain and Portugal.

Mercury (Hg) and selenium (Se) determinations were carried out to evaluate human exposure to those elements through fish consumption in Spain and Portugal. Atomic fluorescence spectroscopy (AFS) was applied in a cold vapor mode for total mercury quantification and was also hyphenated to gas chromatography (GC) to achieve the speciation of organomercurial species in fish samples. The results obtained show the highest concentration of Hg in swordfish and tuna (0.47+/-0.02 and 0.31+/-0.01 microg g-1, respectively), and a much lower concentration in sardine, mackerel shad, and octopus (0.048+/-0.002, 0.033+/-0.001, and 0.024+/-0.001 microg g-1, respectively). The determination of alkyl mercury compounds revealed that 93-98% of mercury in the fish samples was in the organic form. Methylmercury (MeHg) was the only species found in the three fish species with higher mercury content. Total selenium concentration was high in sardine, swordfish, and tuna (0.43+/-0.02, 0.47+/-0.02, and 0.92+/-0.01 microg g-1, respectively), but low in mackerel shad and octopus (0.26+/-0.01 and 0.13+/-0.01 microg g-1, respectively). Speciation of selenium compounds was done by high-performance liquid chromatography in conjunction with inductively coupled plasma mass spectrometry (LC-ICP-MS). Selenomethionine (SeMet) was the only selenium compound identified in the fish samples with higher selenium content. Among the fish species studied, sardine had the most favourable Se:Hg and SeMet:MeHg molar ratios; therefore, its consumption seems to be preferable.

Animals↗

Computer simulation for effect of Pr(III) on Ca(II) speciation in human interstitial fluid.

A mutiphase model of metal ion speciation in human interstitial fluid was constructed and the effect of Pr(III) on Ca(II) speciation was studied. Results show that Ca(II) mainly distributes in free Ca2+, [Ca(HCO3)], and [Ca(Lac)]. Because of the competition of Pr(III) for ligands with Ca(II), with the total concentration of Pr(III) rising, the percentages of free Ca2+, [Ca(Lac)] and [Ca(His)(Thr)H3], gradually increase and the percentages of CaHPO4(aq) and [Ca(Cit)(His)H2] gradually decrease. However, the percentages of [Ca(HCO3)] and CaCO3(aq) first increase, and then begin to decrease when the total concentration of Pr(III) exceeds 6.070x10(-4) M.

Calcium↗

Computer simulation for effect of Pr(III) on Ca(II) speciation in human interstitial fluid.

A multiphase model of metal ion speciation in human interstitial fluid was constructed and the effect of Pr(III) on Ca(II) speciation was studied. Results show that free Ca2+, [Ca(HCO3)], and [Ca(Lac)] are the main species of Ca(II). Because of the competition of Pr(III) for ligands with Ca(II), the percentages of free Ca2+, [Ca(Lac)], and [Ca(His)(Thr)H3] increase gradually and the percentages of CaHPO4(aq) and [Ca(Cit)(His)H2] decrease gradually with the increase in the total concentration of Pr(III). However, the percentages of [Ca(HCO3)] and CaCO3(aq) first increase and then begin to decrease when the total concentration of Pr(III) exceeds 6.070 x 10-4 M.

Calcium↗

Inferring the mode of speciation from genomic data: a study of the great apes.

The strictly allopatric model of speciation makes definable predictions on the pattern of divergence, one of which is the uniformity in the divergence time across genomic regions. Using 345 coding and 143 intergenic sequences from the African great apes, we were able to reject the null hypothesis that the divergence time in the coding sequences (CDSs) and intergenic sequences (IGSs) is the same between human and chimpanzee. The conclusion is further supported by the analysis of whole-genome sequences between these species. The difference suggests a prolonged period of genetic exchange during the formation of these two species. Because the analysis should be generally applicable, collecting DNA sequence data from many genomic regions between closely related species should help to settle the debate over the prevalence of the allopatric mode of speciation.

Animals↗

Multilocus analysis of variation and speciation in the closely related species Arabidopsis halleri and A. lyrata.

Nucleotide variation in eight effectively unlinked genes was surveyed in species-wide samples of the closely related outbreeding species Arabidopsis halleri and A. lyrata ssp. petraea and in three of these genes in A. lyrata ssp. lyrata and A. thaliana. Significant genetic differentiation was observed more frequently in A. l. petraea than in A. halleri. Average estimates of nucleotide variation were highest in A. l. petraea and lowest in A. l. lyrata, reflecting differences among species in effective population size. The low level of variation in A. l. lyrata is concordant with a bottleneck effect associated with its origin. The A. halleri/A. l. petraea speciation process was studied, considering the orthologous sequences of an outgroup species (A. thaliana). The high number of ancestral mutations relative to exclusive polymorphisms detected in A. halleri and A. l. petraea, the significant results of the multilocus Fay and Wu H tests, and haplotype sharing between the species indicate introgression subsequent to speciation. Average among-population variation in A. halleri and A. l. petraea was approximately 1.5- and 3-fold higher than that in the inbreeder A. thaliana. The detected reduction of variation in A. thaliana is less than that expected from differences in mating system alone, and therefore from selective processes related to differences in the effective recombination rate, but could be explained by differences in population structure.

Arabidopsis↗

Dynamic coupled metal transport-speciation model: application to assess a zinc-contaminated lake.

A coupled metal transport and speciation/complexation model (TRANSPEC) has been developed to estimate the speciation and fate of multiple interconverting species in surface aquatic systems. Dynamic-TRANSPEC loosely, sequentially couples the speciation/complexation and fate modules that, for the unsteady state formulation, run alternatively at every time step. The speciation module first estimates species abundance using, in this version, MINEQL+ considering time-dependent changes in water and pore-water chemistry. The fate module is based on the quantitative water air sediment interaction (QWASI) model and fugacity/aquivalence formulation, with the option of using a pseudo-steady state solution to account for past discharges. Similarly to the QWASI model for organic contaminants, TRANSPEC assumes the instantaneous equilibrium distribution of metal species among dissolved, colloidal, and particulate phases based on ambient chemistry parameters that can be collected through conventional field methods. The model is illustrated with its application to Ross Lake (Manitoba, Canada) that has elevated Zn concentrations due to discharges over 70 years from a mining operation. Using measurements from field studies, the model reproduces year-round variations in Zn water concentrations. A 10-year projection for current conditions suggests decreasing Zn remobilization and export from the lake. Decreasing Zn loadings increases sediment-to-water transport but decreases water concentrations, and vice versa. Species distribution is affected by pH such that a decrease in pH increases metal export from the lake and vice versa.

Geologic Sediments↗

An algal probe for copper speciation in marine waters: laboratory method development.

Laboratory-based algal assays were developed to explore the bioavailability of copper to the marine alga Thalassiosira weissflogii. A calibration strategy was developed that avoided use of the synthetic ligand ethylenediaminetetraacetic acid (EDTA) in the Aquil growth medium, thereby allowing ambient metal speciation. In a comparison of T. weissflogii cells grown in Aquil medium with EDTA to medium containing no added copper, zinc, and less than 0.003 nM of EDTA, no significant growth differences were observed after 8 d, indicating adequate stored nutrients. A 30-h assay was selected as the optimal time frame after examination of data from concentration-response experiments. Using 65Cu stable isotope additions, parameters examined included growth, chlorophyll a, copper uptake, phytochelatin production, and dissolved organic carbon excretion. The T. weissflogii specific growth rates decreased from 1.36 d(-1)( at pCu (i.e., the negative logarithmic concentration of free Cu) = 8.8 to 0.56 d(-1) at pCu = 7.8, whereas intercellular copper concentrations increased from 13.6 to 70.1 fg/cell, respectively. Calculated values of the copper concentration that caused a 50% reduction in algal growth of pCu = 7.7 and copper per algal mass of 625 microg/g were established. Using an algal assay based on EDTA-free culture medium, along with trace-metal clean techniques, the effect of copper on T. weissflogii and the speciation of copper in marine waters can be studied.

Copper↗

Selenium bioaccumulation in Chlamydomonas reinhardtii and subsequent transfer to Corbicula fluminea: role of selenium speciation and bivalve ventilation.

The uptake of Se by the freshwater alga Chlamydomonas reinhardtii and the subsequent transfer to the Asiatic clam Corbicula fluminea was investigated. The objective was to investigate the bioavailability of algal-bound Se for C. fluminea while taking into account Se speciation and bivalve ventilation. First, uptake rates of waterborne Se (selenite, selenate, and selenomethionine) in the algae during a 1-h exposure period were determined for a range of concentrations up to 2,000 microg/L. Fluxes for selenite uptake were constant in the range of concentrations tested, whereas fluxes for selenate and selenomethionine uptake decreased with increasing concentrations, suggesting a saturated transport system at high concentrations (approximately 1,000 microg/L for selenate and 100 microg/L for selenomethionine). These data were used to set the algal contamination for the study of trophic transfer to the clam. Three parameters were studied: The Se form, the algal density, and the Se burden in the algae. The results show that for a fixed algal density, an Se-contaminated algal diet does not modify ventilation. In this case, the driving factor for ventilation is the algal density, with ventilation being enhanced for low algal densities. On the basis of ventilatory flow rate measurements and Se burdens in algae, it was found that bioaccumulation of Se in C. fluminea was proportional to the total quantity of Se passing through the whole organism, but with a lesser extraction coefficient for selenomethionine than for the inorganic forms. These results underline the importance of both physiological factors and speciation in understanding the trophic transfer of Se.

Animals↗

Effects and risk assessment of linear alkylbenzene sulfonates in agricultural soil. 4. The influence of salt speciation, soil type, and sewage sludge on toxicity using the collembolan Folsomia fimetaria and the earthworm Aporrectodea caliginosa as test organisms.

Sewage sludge applied to agricultural soils often contains linear alkylbenzene sulfonates (LAS) in the range of 1 to 10 g/kg dry weight, and their toxicity to relevant soil organisms should, therefore, be assessed to ensure safe use of sewage sludge as a fertilizer. Studies of LAS toxicity to soil organisms are few, and to our knowledge, factors that may influence the toxicity in the field have not been studied in detail. In this paper, we report on the influence of speciation of LAS in the test solution added to soil (soluble Na-LAS vs poorly soluble Ca-LAS or Mg-LAS), the influence of soil type, and the modifying effects of sludge amendment on the toxicity of LAS. These issues were investigated using reproduction of Collembola and growth of juvenile earthworms as test parameters. Speciation of the LAS added to test soil did not have any influence on toxicity for any of the test species. Likewise, in three different agricultural soils (sand, loam, and clay), we found almost equal toxicities. The LAS added to test soil in a sludge-water suspension was equally toxic as when it was added in an aqueous solution. However, anaerobic incubation for 7 and 14 d of the LAS-sludge suspension (with no decay of LAS) caused the toxicity to increase almost threefold in both collembolan and earthworm. The relationships between soil constituents, bioavailability, and toxicity are also discussed.

Agriculture↗

Speciation of molybdenum in river water by size fractionation and catalytic determination.

A speciation scheme of trace molybdenum was proposed for river water based on size fractionation by filtration and ultrafiltration and the catalytic spectrophotometric determination of the reactive molybdenum concentration (CR). The total concentration (CT) of molybdenum was determined by the same method after acid decomposition to obtain the concentration (CT - CR) of unreactive molybdenum. Most molybdenum in natural river-water samples was found to be reactive species. A large part of the molybdenum was found in the fraction of molecular weight (MW) < 10(3), and was estimated to be MoO4(2-) from the chemical equilibria of molybdate ions. The residual part of molybdenum was found in the colloidal and particle fractions (MW > or = 10(4)), and was characterized as reactive molybdenum adsorbed or complexed on humic iron aggregates. The coexistence of silicate contributed to a decrease of the particle size of humic iron aggregates associated with molybdenum. The above-mentioned speciation results were confirmed by an analysis of artificial samples. The changes in the fractionation results by acidification (0.1 M HCl) were also used to characterize molybdenum in natural water.

Catalysis↗

Specific extraction of chromium as tetrabutylammonium-chromate and spectrophotometric determination by diphenylcarbazide: speciation of chromium in effluent streams.

A very specific, selective, simple, and inexpensive procedure was developed for the speciation of CrVI and CrIII. This method is based on the quantitative extraction of chromate and CrIII (previously oxidized to CrVI) as a tetrabutylammonium-chromate ion-pair in methyl isobutyl ketone (MIBK), and then back extraction and preconcentration with an acidic diphenylcarbazide (DPC) solution. Back extraction was applied to achieve further preconcentration by a final factor of 20. The CrVI-DPC complex was determined in back-extract by a spectrophotometer at 548 nm. Under these extraction conditions, most of the probable concomitant cations and anions remained in the first inorganic phase. The calibration curve was linear up to 0.14 microg L(-1) of CrVI with a detection limit of 2.22 ng L(-1). The developed procedure was found to be suitable for the determination of the CrVI and CrIII species in various natural water samples with a relative standard deviation of better than 1.6%. The method was successfully applied to the speciation of chromium in spiked natural water samples, and also samples of effluent from a leather treatment plant.

Journal Article↗