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PubMed2006

Geometries and electronic structures of metastable C2N4 and its ions.

We carried out the computational studies on the geometric and electronic properties of electronic states of metastable C(2)N(4) (m-C(2)N(4)) and corresponding ions using the CASSCF and DFT(B3LYP)/CCSD(T) techniques. The optimized geometries of electronic states, vibrational frequencies, Mulliken populations, bond orders, and average polarizabilities are computed at the DFT level while the relative energies of the electronic states, ionization energy, electron affinity, binding energy of m-C(2)N(4) are calculated at the CCSD(T) level. The anion photoelectron spectra of m-C(2)N(4)(-) are also predicted. It is interesting to find that the relative energies of the electronic states of m-C(2)N(4) cluster linearly correlate with the amount of charge transfer between N and C atoms and that, however, there is no charge transfer between C and N atoms upon electron ionization or electron attachment.

Carbon↗
PubMed2004

Electronic structure and solvation of copper and silver ions: a theoretical picture of a model aqueous redox reaction.

Electronic states and solvation of Cu and Ag aqua ions are investigated by comparing the Cu(2+) + e(-)--> Cu(+) and Ag(2+) + e(-)--> Ag(+) redox reactions using density functional-based computational methods. The coordination number of aqueous Cu(2+) is found to fluctuate between 5 and 6 and reduces to 2 for Cu(+), which forms a tightly bound linear dihydrate. Reduction of Ag(2+) changes the coordination number from 5 to 4. The energetics of the oxidation reactions is analyzed by comparing vertical ionization potentials, relaxation energies, and vertical electron affinities. The model is validated by a computation of the free energy of the full redox reaction Ag(2+) + Cu(+) --> Ag(+) + Cu(2+). Investigation of the one-electron states shows that the redox active frontier orbitals are confined to the energy gap between occupied and empty states of the pure solvent and localized on the metal ion hydration complex. The effect of solvent fluctuations on the electronic states is highlighted in a computation of the UV absorption spectrum of Cu(+) and Ag(+).

Journal Article↗
PubMed2006

Electronic structure and stability of semiconducting graphene nanoribbons.

We present a systematic density functional theory study of the electronic properties, optical spectra, and relative thermodynamic stability of semiconducting graphene nanoribbons. We consider ribbons with different edge nature including bare and hydrogen-terminated ribbons, several crystallographic orientations, and widths up to 3 nm. Our results can be extrapolated to wider ribbons providing a qualitative way of determining the electronic properties of ribbons with widths of practical significance. We predict that in order to produce materials with band gaps similar to Ge or InN, the width of the ribbons must be between 2 and 3 nm. If larger bang gap ribbons are needed (like Si, InP, or GaAs), their width must be reduced to 1-2 nm. According to the extrapolated inverse power law obtained in this work, armchair carbon nanoribbons of widths larger than 8 nm will present a maximum band gap of 0.3 eV, while for ribbons with a width of 80 nm the maximum possible band gap is 0.05 eV. For chiral nanoribbons the band gap oscillations rapidly vanish as a function of the chiral angle indicating that a careful design of their crystallographic nature is an essential ingredient for controlling their electronic properties. Optical excitations show important differences between ribbons with and without hydrogen termination and are found to be sensitive to the carbon nanoribbon width. This should provide a practical way of revealing information on their size and the nature of their edges.

Journal Article↗
PubMed2004

Electronic structure of tubular aromatic molecules derived from the metallic (5,5) armchair single wall carbon nanotube.

All-electron static and time-dependent DFT electronic calculations, with complete geometrical optimization, are performed on tubular molecules up to C(210)H(20) that are finite sections of the (5,5) metallic single wall carbon nanotube with hydrogen termination at the open ends. We find pronounced C-C bond reconstruction at the tube ends; this initiates bond alternation that propagates into the tube centers. For the especially low band gap molecules C(120)H(20), C(150)H(20), and C(180)H(20), alternation increases, and a second nearly isoenergic structural isomer of different alternation is found. A small residual C-C bond alternation and band gap may be present in the infinite tube. The van Hove band gap forms quickly with length, while the metallic Fermi point (at the crossing of linear bands) forms very slowly with length. There are no end-localized states at energies near the Fermi energy. The HOMO-LUMO gap and the lowest singlet excited state, whose energies show a periodicity with length as previously calculated, are optically forbidden. However, each molecule shows an intense visible "charge transfer" transition, not present in the infinite tube, whose energy varies smoothly with length; this transition should be an identifying signature for these molecules. The static axial polarizability per unit length increases rapidly with N as the "charge transfer" transition moves into the infrared; this indicates increasing metallic character. However, the ionization potential, electron affinity, chemical hardness, and relative energetic stability all show the length periodicity seen in the HOMO-LUMO gap, in contrast to the optical "charge transfer" transition and the static axial polarizability. These periodicities, due to a one-dimensional quantum size effect as originally modeled by Coulson in 1938, nevertheless cancel in the calculated Fermi energy, which varies smoothly toward a predicted bulk work function near 3.9 eV. A detailed study of C(190)H(20) with up to eight extra electrons or holes shows the total energy is closely fit by a simple classical charging model, as is commonly applied to metallic clusters.

Journal Article↗
PubMed2001

Axial ligand modulation of the electronic structures of binuclear copper sites: analysis of paramagnetic 1H NMR spectra of Met160Gln Cu(A).

Cu(A) is an electron-transfer copper center present in heme-copper oxidases and N2O reductases. The center is a binuclear unit, with two cysteine ligands bridging the metal ions and two terminal histidine residues. A Met residue and a peptide carbonyl group are located on opposite sides of the Cu2S2 plane; these weaker ligands are fully conserved in all known Cu(A) sites. The Met160Gln mutant of the soluble subunit II of Thermus thermophilus ba3 oxidase has been studied by NMR spectroscopy. In its oxidized form, the binuclear copper is a fully delocalized mixed-valence pair, as are all natural Cu(A) centers. The faster nuclear relaxation in this mutant suggests that a low-lying excited state has shifted to higher energies compared to that of the wild-type protein. The introduction of the Gln residue alters the coordination mode of His114 but does not affect His157, thereby confirming the proposal that the axial ligand-to-copper distances influence the copper-His interactions (Robinson, H.; Ang, M. C.; Gao, Y. G.; Hay, M. T.; Lu, Y.; Wang, A. H. Biochemistry 1999, 38, 5677). Changes in the hyperfine coupling constants of the Cys beta-CH2 groups are attributed to minor geometrical changes that affect the Cu-S-C(beta)-H(beta) dihedral angles. These changes, in addition, shift the thermally accessible excited states, thus influencing the spectral position of the Cys beta-CH2 resonances. The Cu-Cys bonds are not substantially altered by the Cu-Gln160 interaction, in contrast to the situation found in the evolutionarily related blue copper proteins. It is possible that regulatory subunits in the mitochondrial oxidases fix the relative positions of thermally accessible Cu(A) excited states by tuning axial ligand interactions.

Copper↗
PubMed2003

Electronic structures of mixed-sandwich complexes of cyclopentadienyl and Hydrotris(pyrazolyl)borate ligands with 3d transition metals.

The electronic and magnetic properties of a series of mixed-sandwich complexes MCp(R)Tp (Cp(R) = Cp or Cp; Tp = hydrotris(pyrazolyl)borate; M = V, Cr, Fe, Co or Ni) have been studied and compared to their homoleptic analogues, MCp(R)(2) and MTp(2). Solid-state magnetic susceptibility measurements and EPR spectroscopic data indicate that complexes with d(3), d(6), and d(8) configurations are similar electronically to their metallocene analogues, except for FeCpTp, which displays a spin equilibrium (S = 0 if S = 2) in solution which was investigated by variable- temperature NMR spectroscopy. The d(2) complex [VCpTp](+) displays magnetic behavior consistent with an orbitally nondegenerate ground state. The d(4) species CrCpTp has a high-spin (S = 2) ground state. The d(7) species CoCpTp is high spin (S = 3/2) whereas its Cp analogue and [NiCpTp](+) are both low-spin (S = 1/2) species. The optical spectra of the d(3), d(6), and d(8) complexes were assigned in a fashion similar to the analogous metallocenes and ligand-field parameters (delta(1) = delta-sigma gap, delta(2) = sigma-pi gap for d-orbitals in axial symmetry) calculated. The analysis shows that for 15-electron species the total ligand-field splitting, delta(TOT), is larger than for their metallocene analogues, whereas for the 18-electron case Delta(TOT) is smaller and for 20-electron systems delta(TOT) is approximately the same. In all cases delta(2) is substantially reduced compared to the metallocenes, and in the majority of cases delta(1) is markedly larger. DFT calculations were performed to investigate further the nature of the ligand environment on the frontier orbitals in these complexes. Orbital energies and compositions were calculated and compared for a series of homoleptic and mixed-sandwich complexes of Ni(II) and across the 1st transition series for MCp(R)Tp species. The ability of Tp (vs Cp) to act as a delta-donor (with respect to the principal molecular axis) imparts significant ligand antibonding character to the delta-orbitals and results in decreased epsilon(pi)-epsilon(delta) values compared to the metallocenes and an increased tendency toward high-spin complexes in the mixed-sandwich complexes. Structure calculations were performed for CrCpTp, [VCpTp](+), and CoCpTp which show substantial distortions from ideal axial symmetry in their crystal structures. The origins of these distortions were confirmed to arise from unequal occupancy of near-degenerate delta- and pi-levels.

Journal Article↗
PubMed2005

Structural, electronic, and vibrational characterization of Fe-HNO porphyrinates by density functional theory.

A recent report of the structural and vibrational properties of heme-bound HNO in myoglobin, MbHNO, revealed a long Fe-N(HNO) bond with the hydrogen atom bonded to the coordinated N atom. The Fe-N(H)-O moiety was reported to exhibit an unusually high Fe-N(HNO) stretching frequency relative to those of the corresponding [FeNO]6 and [FeNO]7 porphyrinates, despite the Fe-N(HNO) bond being longer than either of its Fe-N(NO) counterparts. Herein, we present results from density functional theory calculations of an active site model of MbHNO that support the previous assignment and clarify this seemingly contradictory result. The results are consistent with the experimental evidence for a ground-state Fe-N(H)-O structure having a long Fe-N(HNO) bond and a uniquely high nu(Fe)(-)(N(HNO)) frequency. This high frequency is the result of the correspondingly low reduced mass of the normal mode, which is largely attributable to significant motion of the N-bound hydrogen atom. Additionally, the calculations show the Fe-N(H)O bonding in this complex to be remarkably insensitive to whether the HNO and ImH ligand planes are parallel or perpendicular. This is attributed to insensitivities of the Fe-L(axial) characters of molecular orbitals to the relative HNO and ImH orientation in both the parallel and perpendicular conformers.

Hydrogen Bonding↗
PubMed2006

Electronic structures and chemical bonding in transition metal monosilicides MSi (M = 3d, 4d, 5d elements).

Bond distances, vibrational frequencies, electron affinities, ionization potentials, dissociation energies, and dipole moments of the title molecules in neutral, positively, and negatively charged ions were studied using the density functional method. Ground state was assigned for each species. The bonding patterns were analyzed and compared with both the available data and across the series. It was found that besides an ionic component, covalent bonds are formed between the metal s,d orbitals and the silicon 3p orbital. The covalent character increases from ScSi (YSi) to NiSi (PdSi) for 3d (4d) metal monosilicides, then decreases. For 5d metal monosilicides, the covalent character increases from LaSi to OsSi, then decreases. For the dissociation of cations, the dissociation channel depends on the magnitude of the ionization potential between metal and silicon. If the ionization potential of the metal is smaller than that of silicon, channel MSi+ --> M+ + Si is favored. Otherwise, MSi+ --> M + Si+ will be favored. A similar behavior was observed for anions, in which the dissociation channel depends on the magnitude of electron affinity.

Journal Article↗
PubMed2003

Strain and high temperature superconductivity: unexpected results from direct electronic structure measurements in thin films.

Angle-resolved photoemission spectroscopy reveals very surprising strain-induced effects on the electronic band dispersion of epitaxial La(2-x)Sr(x)CuO(4-delta) thin films. In strained films we measure a band that crosses the Fermi level (E(F)) well before the Brillouin zone boundary. This is in contrast to the flat band reported in unstrained single crystals and in our unstrained films, as well as in contrast to the band flattening predicted by band structure calculations for in-plane compressive strain. In spite of the density of states reduction near E(F), the critical temperature increases in strained films with respect to unstrained samples. These results require a radical departure from commonly accepted notions about strain effects on high temperature superconductors, with possible general repercussions on superconductivity theory.

Journal Article↗
PubMed2006

Bulk electronic structure of metals resolved with scanning tunneling microscopy.

We demonstrate that bulk band structure can have a strong influence in scanning tunneling microscopy measurements by resolving electronic interference patterns associated with scattering phenomena of bulk states at a metal surface and reconstructing the bulk band topology. Our data reveal that bulk information can be detected because states at the edge of the surface-projected bulk band have a predominant role on the scattering patterns. With the aid of density functional calculations, we associate this effect with an intrinsic increase in the projected density of states of edge states. This enhancement is characteristic of the three-dimensional bulk band curvature, a phenomenon analog to a van Hove singularity.

Journal Article↗