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Amide hydrogen exchange rates of peptides in H2O solution by 1H nuclear magnetic resonance transfer of solvent saturation method. Conformations of oxytocin and lysine vasopressin in aqueous solution.

The NH exchange rates in aqueous media of oxytocin and 8-lysine vasopressin (LVP) have been measured by using transfer of solvent saturation method. The data are consistent with a "highly motile" dynamic equilibrium between folded and highly solvated conformations. The highly-motility limit applies to the exchange of NH hydrogens of oxytocin and LVP. Folded structures are more prevalent in oxytocin than in LVP. Partial shielding is indicated for peptide hydrogens of Asn5 and perhaps also Cys6 of oxytocin and for Cys6 of LVP. It is tentatively proposed that the folded conformation of oxytocin in aqueous media may contain a parallel beta-structure in the tocinamide ring consisting of two hydrogen bonds: one between the Tyr2 C = O and Asn5 peptide NH as originally proposed for the preferred conformation of oxytocin in dimethyl sulfoxide (D. W. Urry and R. Walter), and the second between he Cys1 C = O and the Cys6 NH. In LVP the hydrogen bond between the Tyr2 C = O and Asn5 peptide NH appears to be absent. The acylic tripeptide sequences (-Pro-X-Gly-NH2) of both hormones appear to be predominantly solvated. The second-order rate constants for acid catalyzed exchange of the primary amide hydrogens of Gln4, Asn5, and Gly9 of oxytocin are consistently greater for the trans NH than for the corresponding cis NH. This observation can be rationalized in terms of mechanisms involving protonation of either the amide oxygen, or the amide nitrogen, but with limited rotation about the C - N bond.

Lypressin↗

Similarities between the thermal inactivation kinetics of Bacillus amyloliquefaciens alpha-amylase in an aqueous solution of sodium dodecyl sulphate and the kinetics in the solution of anionic-phospholipid vesicles.

An anionic surfactant, SDS, is commonly used to model compounds of negatively charged phospholipids. The effect of SDS on the thermal inactivation of BAA (alpha-amylase from Bacillus amyloliquefaciens ) was compared with the effect of negatively charged phospholipid vesicles of DOPA (dioleoylphosphatidic acid) at 40-55 degrees C. The inactivation kinetics revealed that both SDS below its c.m.c. (critical micellar concentration) and DOPA vesicles accelerated the inactivation and the unfolding of the enzyme structure. Both SDS and DOPA vesicles lowered the activation enthalpy and entropy for the inactivation. The lowered activation parameters might be due to the relatively small energy requirement needed to reach the transition state from the ground state of BAA in the presence of the negatively charged hydrophobic environments. This study suggests an accelerated unfolding of BAA in the presence of SDS to be energetically similar to the accelerated unfolding in the presence of DOPA vesicles that involve a molten-globule-like state.

Animals↗

A computational study of hydration, solution structure, and dynamics in dilute carbohydrate solutions.

We report results from a molecular simulation study of the structure and dynamics of water near single carbohydrate molecules (glucose, trehalose, and sucrose) at 0 and 30 degrees C. The presence of a carbohydrate molecule has a number of significant effects on the microscopic water structure and dynamics. All three carbohydrates disrupt the tetrahedral arrangement of proximal water molecules and restrict their translational and rotational mobility. These destructuring effects and slow dynamics are the result of steric constraints imposed by the carbohydrate molecule and of the ability of a carbohydrate to form stable H bonds with water, respectively. The carbohydrates induce a pronounced decoupling between translational and rotational motions of proximal water molecules.

Journal Article↗