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PubMed1981

Scanning calorimetric investigation of the polymerization of the coat protein of tobacco mosaic virus.

The endothermic polymerization of the coat protein of tobacco mosaic virus has been studied by high-sensitivity differential scanning calorimetry, with control experiments involving turbidimetry and sedimentation velocity measurements. The variation of the apparent extent of polymerization under conditions close to equilibrium as the temperature is raised follows a course which is difficult to duplicate on the basis of simple models for the process. The enthalpy of polymerization at low protein concentration varies from 12.5 kcal (mol of monomer)-1 (17500 daltons) under conditions where the product is largely a mixture of short helical rods to 6.0 kcal ol-1 for the formation of double disks containing 34 monomer units. In the former case, the polymerization is accompanied by a decrease in apparent heat capacity of 350 cal K-1 mol-1 while in the latter there is an increase of 150 cal K-1 mol-1. These results constitute evidence that these two types of polymerization involve intersubunit bonds of quite different chemical character.

Calorimetry, Differential Scanning↗
PubMed1981

Polymerization of clathrin protomers into basket structures.

The effects of pH, ionic strength, temperature, and protein concentration on the rate of clathrin (8 S) polymerization to form coat (or basket) structures (approximately 300 S) have been measured by turbidity. The extent of polymerization has also been evaluated under the same experimental conditions by analytical centrifugation. The characteristic polygonal structure of the re-formed coat was confirmed by electron microscopy. The rate of polymerization is sensitive to all the variables investigated. The reaction is very slow at pH approximately 7 and becomes very rapid by pH approximately 6. The polymerization is readily reversed by increasing the pH slightly. The time dependence of the polymerization does not conform to either a first- or a second-order reaction but to a higher order. Increasing temperature increases the rate but decreases the extent of reaction. Increasing the salt concentration decreases the rate. The effects of several salts on the rate follow the Hofmeister ranking, with the exception of sulfate.

Animals↗
PubMed1981

Effect of basic compounds on the polymerization of clathrin.

The effects of several divalent cations, various polybasic amines, and lysozyme on the rate of polymerization of 8S clathrin to the 300S coat structure have been evaluated by turbidimetric procedures. Ca2+ and Mn2+ strongly enhance the rate of polymerization. Only spermine among the naturally occurring polybasic amines had an important effect. Of the several basic proteins evaluated, only lysozyme stimulated the rate of polymerization. Some of these substances were able to increase the rate sufficiently so that polymerization occurred at physiological pH values. Without these compounds, clathrin will only polymerize at pH values of 6.8 or less.

Animals↗
PubMed2001

Fesselin, a synaptopodin-like protein, stimulates actin nucleation and polymerization.

Fesselin is a proline-rich actin binding protein that has recently been isolated from smooth muscle [Leinweber, B. D., Fredricksen, R. S., Hoffman, D. R., and Chalovich, J. M. (1999) J. Muscle Res. Cell Motil. 20, 539-545]. Fesselin is similar to synaptopodin [Mundel, P., Heid, H. W., Mundel, T. M., Krüger, M., Reiser, J., and Kriz, W. (1997) J. Cell Biol. 139, 193-204] in terms of its size, isoelectric point, and sequence although synaptopodin is not present in smooth muscle. The function of fesselin is unknown. Evidence is presented here that fesselin accelerates the polymerization of actin. Fesselin was effective on actin isolated from either smooth or skeletal muscle at low ionic strength and in the presence of 100 mM KCl. At low ionic strength, fesselin decreased the time for 50% polymerization to about 1% of that in the absence of fesselin. The lag phase characteristic of the slow nucleation process of polymerization was eliminated as the fesselin concentration was increased from very low levels. Fesselin did not alter the critical concentration for actin but did increase the rate of elongation by approximately 3-fold. The increase in elongation rate constant is insufficient to account for the total increase in polymerization rate. It is likely that fesselin stabilizes the formation of actin nuclei. Time courses of actin polymerization at varied fesselin concentrations and varied actin concentrations were simulated by increasing the rate of nucleation and both the forward and reverse rate constants for elongation.

Actins↗
PubMed2003

Inhibition of tau polymerization by its carboxy-terminal caspase cleavage fragment.

Abnormal aggregation of the microtubule-associated protein, tau, occurs in many neurodegenerative diseases, making it important to understand the mechanisms of tau polymerization. Previous work has indicated that the C-terminal region of tau inhibits polymerization in vitro, and a growing body of evidence implicates caspase cleavage of tau at Asp 421 in the C-terminus as an important inducer of tau polymerization in Alzheimer's disease. In the present study, we provide evidence that the C-terminal peptide fragment produced by caspase cleavage inhibits tau polymerization, suggesting that caspase cleavage of tau enhances its polymerization by removing the inhibitory control element. Moreover, we provide evidence that the peptide assumes an alpha-helical configuration and inhibits tau assembly by interacting with residues 321-375 in the microtubule binding repeat region. These findings indicate that formation of the fibrillar pathologies during the course of Alzheimer's disease may be driven or sustained by apoptotic events leading to caspase activation.

Amino Acid Sequence↗
PubMed2003

Modeling tau polymerization in vitro: a review and synthesis.

The major antigenic component of neurofibrillary pathology in a large number of neurodegenerative diseases consists of the microtubule-associated protein tau. It is currently unclear how tau protein makes the transition from an important component of the microtubule-based cytoskeleton to an insoluble polymerized state. In vitro techniques have been employed to study the polymerization of tau in an effort to understand the underlying molecular mechanisms responsible for this process. These efforts have resulted in the elucidation of roles played by the different parts of the molecule in the polymerization process. Here we discuss the advantages and disadvantages of the various techniques used to model tau polymerization and the discoveries arising from these techniques that have led to a better structural understanding of tau polymerization in relation to Alzheimer's disease and other tauopathies.

Alzheimer Disease↗
PubMed2004

Different conformational changes within the F-helix occur during serpin folding, polymerization, and proteinase inhibition.

The intrinsic metastability of the serpin native state is the thermodynamic driving force for both proteinase inhibition and the formation of inactive polymers. A number of mechanisms has been proposed to explain how both these conformational changes are achieved. However, one aspect that has received little attention is the movement of the F-helix, which physically impedes both these events. We have applied a protein engineering approach to investigate the conformational changes of this helix during proteinase inhibition, serpin folding, and polymerization. We systematically mutated two highly conserved hydrophobic residues on the F-helix, V161 and I157, and in addition, removed a hydrogen bond between D149 and the first turn of the helix. Our data demonstrate that while all three interactions are important for the stability and folding of the molecule, their contribution during inhibition and polymerization differ. The presence of I157 is crucial to all conformational changes as its loss results in inactivation of the serpin and rapid polymerization. The replacement of D149 does not affect activity but significantly increases the polymerization rate. The interactions formed by V161 play an important role only in maintaining the native conformation. Taken together, these data suggest that the F-helix undergoes a reversible conformational change in both its N- and C-termini during proteinase inhibition only the C-terminus undergoes changes during polymerization, but there is a global change required for folding.

Humans↗
PubMed1997

Role of beta87 Thr in the beta6 Val acceptor site during deoxy Hb S polymerization.

Three new Hb S variants containing beta87 Leu, Trp, or Asp instead of Thr were expressed in yeast in order to further define the role of the beta87 position in stability and polymerization of deoxy Hb S. Previous studies showed that hydrophobicity at beta85 Phe and beta88 Leu is critical for stabilization of hemoglobin. Results with the three Hb S beta87 variants, however, showed minimal differences in stability, suggesting that beta87 amino acid hydrophobicity is not critical for stabilization of hemoglobin. Polymerization properties of the variants in the deoxy form, however, were affected by the beta87 amino acid. Polymerization of Hb S beta87 Thr --> Leu and Hb S beta87 Thr --> Trp was preceded by a delay time like Hb S, while Hb S beta87 Thr --> Asp did not show a delay time. In addition, changes in time required for half polymer formation (T1/2) as a function of hemoglobin concentration for Hb S beta87 Thr --> Asp were similar to that for beta87 Thr --> Gln. Hb S beta87 Thr --> Leu polymerized at a lower hemoglobin concentration than Hb S while beta87 Thr --> Trp and Hb S beta87 Thr --> Asp required much higher hemoglobin concentrations for polymer formation. Critical concentration required for deoxy Hb S beta87 Thr --> Asp polymerization was 6- and 2.3-fold greater than that for Hb S beta85 Phe --> Glu and Hb S beta88 Leu --> Glu, respectively. These results suggest that even though beta87 Thr is not a direct interaction site for beta6 Val in deoxy Hb S polymers, it does play a critical role in formation of the hydrophobic acceptor pocket which then promotes protein-protein interactions facilitating formation of stable nuclei and polymers of deoxy Hb S.

Biopolymers↗
PubMed1999

Modified-peptide inhibitors of amyloid beta-peptide polymerization.

Cellular toxicity resulting from nucleation-dependent polymerization of amyloid beta-peptide (Abeta) is considered to be a major and possibly the primary component of Alzheimer's disease (AD). Inhibition of Abeta polymerization has thus been identified as a target for the development of therapeutic agents for the treatment of AD. The intrinsic affinity of Abeta for itself suggested that Abeta-specific interactions could be adapted to the development of compounds that would bind to Abeta and prevent it from polymerizing. Abeta-derived peptides of fifteen residues were found to be inhibitory of Abeta polymerization. The activity of these peptides was subsequently enhanced through modification of their amino termini with specific organic reagents. Additional series of compounds prepared to probe structural requirements for activity allowed reduction of the size of the inhibitors and optimization of the Abeta-derived peptide portion to afford a lead compound, cholyl-Leu-Val-Phe-Phe-Ala-OH (PPI-368), with potent polymerization inhibitory activity but limited biochemical stability. The corresponding all-D-amino acyl analogue peptide acid (PPI-433) and amide (PPI-457) retained inhibitory activity and were both stable in monkey cerebrospinal fluid for 24 h.

Amino Acid Sequence↗
PubMed2000

Well-defined oligosaccharide-terminated polymers from living radical polymerization.

beta-cyclodextrin has been transformed into an initiator for copper(I)-mediated living radical polymerization via successive acetylation, ring opening, and condensation reactions. This glycoinitiator has been successfully used to prepare a range of methacrylate polymers, which show all characteristics of living polymerization. Poly(methyl methacrylate) is prepared with an Mn of 10,100 g/mol (theoretical Mn = 10,900) and polydispersity of 1.09. Excellent first-order kinetics and an evolution of mass with time are presented. Hydrophilic polymers based on poly(ethylene glycol), glucose and tertiary amine monomers are successfully prepared with terminal maltoheptose units. Polymerization of styrene results in a broadening of the polydispersity to 1.48 while maintaining good control over the Mn. The acetyl protecting groups on the maltoheptose terminal unit are easily removed in all cases to give the hydroxylated sugar, as shown by NMR. These results demonstrate the applicability of utilizing glycoinitiators as a new, versatile route to a wide range of glycopolymers. The polymerization chemistry is inert to the sugar functionality allowing glyco units to be precisely placed within a synthetic macromolecule with all the associated advantages of living polymerization.

Carbohydrate Sequence↗
PubMed2001

Poly(oxazoline)s with tapered minidendritic side groups as models for the design of synthetic macromolecules with tertiary structure. A demonstration of the limitations of living polymerization in the design of 3-D structures based on single polymer chains.

The synthesis and living cationic ring-opening polymerization of 2-[3,4-bis(n-alkan-1-yloxy)phenyl]-2-oxazolines with alkan being tetradecan and pentadecan, i.e., (3,4)nG1-Oxz with n = 14 and 15, is described. The structural analysis of the resulting polymers with well-defined molecular weights and narrow molecular weight distribution was carried out by a combination of techniques, including differential scanning calorimetry (DSC), thermal optical polarized microscopy (TOPM), and X-ray diffraction (XRD). At low molecular weights both polymers self-assemble into spherical supramolecules that self-organize into a Pm3n 3-D lattice while at high molecular weights they form cylindrical macromolecules that self-organize into a p6mm 2-D hexagonal columnar lattice. Both polymers exhibit a 3-D shape change as a function of their degree of polymerization as was reported for the first time in a previous publication from our laboratory (Percec, V.; Ahn, C.-H; Ungar, G.; Yeardley, D. J. P.; Möller, M.; Sheiko, S. S. Nature (London) 1998, 391, 161). Since these polymers can be obtained via a living polymerization, a detailed mechanistic investigation of the influence of the degree of polymerization and molecular weight distribution on the formation of a 3-D spherical macromolecule from a single polymer chain, i.e., a tertiary structure, was possible. The experimental results have demonstrated that the synthesis of nonbiological macromolecules exhibiting tertiary structure is possible in at most a few percent of all macromolecules via living polymerization. This is the case even when macromolecules with very narrow molecular weight distributions and well-defined molecular weights are used. Therefore, the design of synthetic macromolecules with tertiary structure requires not only chains with well-defined molecular weight but also, in particular, macromolecules with no distribution of their chain length.

Calorimetry, Differential Scanning↗
PubMedDate not supplied

Enzymatic polymerization of tyrosine derivatives. Peroxidase- and protease-catalyzed synthesis of poly(tyrosine)s with different structures.

Polymerization of tyrosine derivatives has been carried out by using two enzymes, peroxidase and protease, as catalyst to give poly(tyrosine)s with different structures. Tyrosine ester hydrochlorides were oxidatively polymerized by a peroxidase in a buffer. Using a high buffer concentration produced the polymer in good yields. The resulting polymer was soluble in N,N-dimethylformamide, dimethyl sulfoxide, and methanol but was insoluble in acetone, tetrahydrofuran, and water. The ester moiety of the polymer was subjected to the alkaline hydrolysis, yielding a water-soluble polymer having the amino acid group in the side chain. The peroxidase also catalyzed the oxidative polymerization of N-acetyltyrosine to give the polymer soluble in water. The polymerization of tyrosine ester hydrochlorides proceeded in the presence of papain catalyst to give a polymer of alpha-peptide structure. The polymerization in the buffer of high phosphate concentration efficiently produced the polymer. On the other hand, the polymer formation was not observed in the low buffer concentration. The molecular weight was several thousands and almost constant during the reaction. The morphology of the precipitated polymer was examined. The product of the initial reaction stage was amorphous. After 24 h, the precipitates exhibiting clear birefringence were formed. Scanning electron microscopy observation of the polymer after 72 h showed the formation of a globular crystal in a diameter larger than 50 microm, which was not found by recrystallization of poly(tyrosine).

Biocompatible Materials↗
PubMedDate not supplied

Formation of polymerized mixed heparin/albumin surface layer and cellular adhesional responses.

The aim of this study was to create a dense albuminated layer, a heparinized layer, and a mixed layer on a poly(acrylic acid)-grafted surface via visible light induced photopolymerization. The procedure is comprised of four reaction steps: first, by visible light irradiation, acrylic acid (AA) was graft-polymerized on a segmented polyurethane (SPU) film that was preimpregnated with camphorquinone. The second step was adsorption of multiply styrenated albumin or styrenated heparin or their mixture, followed by visible light irradiation in the presence of carboxylated camphorquinone. The third step was covalent bonding between polyAA graft chain and polymerized biomacromolecule and between polymerized biomacromolecule to enforce the formation of a stable immobilized multilayer. X-ray photoelectron spectroscopic and Fourier transform-infrared spectroscopic measurements were conducted to analyze the surfaces formed at each step. Confocal laser scanning microscopy was utilized to determine the thickness of the biomacromolecule-immobilized layer with several tenths of a micrometer thickness. Platelet adhesion was markedly reduced on polymerized albuminated, polymerized heparinized, and copolymerized layers, whereas adhesive and proliferative potentials of endothelial cells, which were comparable to those of commercial tissue culture dishes, were observed on these surfaces. Co-immobilization of fibronectin and basic fibroblast growth factor enhanced these potentials. These densely multilayered surfaces may be suitable for artificial and tissue-engineered devices.

Cell Adhesion↗
PubMedDate not supplied

Kinetic chain lengths in highly cross-linked networks formed by the photoinitiated polymerization of divinyl monomers: a gel permeation chromatography investigation.

Highly cross-linked networks formed by the photoinitiated polymerization of multifunctional monomers are finding application in the field of biomaterials because of their chemical versatility, reaction control, and ability to polymerize under physiological conditions. Typically, degradation is introduced into these networks via the cross-links and leads to the release of nondegradable but water-soluble kinetic chains formed during the chain polymerization process. In this study, gel permeation chromatography (GPC) was used to characterize kinetic chain length distributions in highly cross-linked systems that are being developed for orthopedic applications. By polymerizing divinyl monomers to various conversions and subsequently degrading them, we investigated the aspects of network structural evolution related to kinetic chain formation. In general, the average kinetic chain length increased with conversion until the onset of autodeceleration, when the kinetic chains decreased in length as the propagation reaction became diffusion-controlled. The distribution of kinetic chains also changed when different initiation conditions (i.e., initiator concentration and incident light intensity) were used, and a decrease in the kinetic chain lengths was observed at higher initiation rates. Finally, kinetic chain lengths were examined as a function of depth in thick samples polymerized with different light intensities and with a photobleaching initiator. Light attenuation through the sample led to different initiation rates as a function of depth and, consequently, spatial heterogeneity in the network structure as measured by the distributions of kinetic chains.

Butadienes↗
PubMedDate not supplied

Stereoselective polymerization of rac-lactide using a monoethylaluminum Schiff base complex.

A monoethylaluminum Schiff base complex (2) with formula LAlEt (L = N,N'-(2,2-dimethylpropylene)bis(3,5-di-tert-butylsalicylideneimine) was synthesized and employed for the stereoselective ring-opening polymerization of rac-lactide (rac-LA). The complex 2 was characterized by nuclear magnetic resonance, crystal structure, and elemental analysis. It contains a five-coordinate aluminum atom with distorted trigonal bipyramidal geometry in the solid state. In the presence of 2-propanol, 2 showed high stereoselectivity for the polymerization of rac-LA. The polymerization yielded crystalline poly(rac-LA) with a high melting temperature (193-201 degrees C). NMR, differential scanning calorimetry, and wide-angle X-ray diffraction indicated that the poly(rac-LA) was highly isotactic, and a stereocomplex was formed between poly-l- and poly-d-lactide block sequences. By the analysis of electrospray-ionization mass spectrometry and (1)H NMR, the polymer was demonstrated to be endcapped in both terminals with an isopropyl ester and a hydroxy group, respectively. The polymerization was of first order in rac-LA concentration. The relationship between the rac-LA conversion and molecular weights of the polymer was linear so that the polymerization could be well controlled.

Aluminum Compounds↗
PubMedDate not supplied

Bottom-up synthesis of hyaluronan and its derivatives via enzymatic polymerization: direct incorporation of an amido functional group.

This paper reports the synthesis of hyaluronan (HA) and its derivatives via the hyaluronidase-catalyzed polymerization of 2-substituted oxazoline derivative monomers designed as "transition-state analogue substrates". Polymerization of 2-methyl oxazoline monomer from N-acetylhyalobiuronate (GlcAbeta(1-->3)GlcNAc) effectively proceeded at pH 7.5 and 30 degrees C, giving rise to synthetic HA (natural type) in an optimal yield of 78% via ring-opening polyaddition under total control of regioselectivity and stereochemistry. Hyaluronidase catalysis enabled the polymerization of 2-ethyl, 2-n-propyl, and 2-vinyl monomers, affording the corresponding HA derivatives (unnatural type) with N-propionyl, N-butyryl, and N-acryloyl functional groups, respectively, at the C2 position of all glucosamine units in good yields. The 2-isopropyl oxazoline derivative provided the N-isobutyryl derivative of HA in low yields. Monomers of 2-phenyl and 2-isopropenyl oxazoline derivatives were not polymerized. The mechanism of the polymerization is discussed.

Amides↗
PubMedDate not supplied

Formation of core-shell type biodegradable polymeric micelles from amphiphilic poly(aspartic acid)-block-polylactide diblock copolymer.

Poly(aspartic acid)-block-polylactide diblock copolymers (PAsp-b-PLAs) having both hydrophilic and hydrophobic segments of various lengths were synthesized. These PAsp-b-PLA diblock copolymers formed polymeric micelles consisting of a hydrophobic PLA core and a hydrophilic, pH-sensitive PAsp shell in aqueous solution. The effects of the segment length of both the PLA and the PAsp portions and the pH of the solution on the shapes and sizes of the PAsp-b-PLA polymeric micelles were investigated. The results indicated a balance between the effects of electrostatic repulsion, hydrogen bonding in the PAsp shell layer, and hydrophobic interactions in the PLA core determine the sizes of the PAsp-b-PLA polymeric micelles. Moreover, the PAsp-b-PLA polymeric micelles did not possess any cytotoxic activity against L929 fibroblast cells. The obtained polymeric micelle should be useful for biodegradable biomedical materials such as drug delivery vehicle.

Biocompatible Materials↗
PubMedDate not supplied

Functionalized micellar assemblies prepared via block copolymers synthesized by living free radical polymerization upon peptide-loaded resins.

Hybrid peptidic-synthetic amphiphilic block copolymers, synthesized by living free radical polymerization (LFRP) on solid support, have been utilized as precursors for nanoscale materials possessing bio-available peptides. LFRP initiators, coupled to the peptide terminus upon the resin, facilitated the growth of homo- and block copolymers via nitroxide mediated radical polymerization (NMRP) or atom transfer radical polymerization (ATRP). Herein, the versatile solid-support synthesis of the antimicrobial peptide tritrpticin, coupling of living free radical polymerization initiators to the peptide-loaded resin, and the controlled radical polymerization of various monomers to yield amphiphilic diblock copolymers are described. Assembly of the peptidic-synthetic block copolymers into micelles and a preliminary assessment of their in vitro biological properties are detailed.

Amino Acid Sequence↗